Wall clock time and date at job start Tue Mar 31 2020 03:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53006 * 109.46606 * 2 1 4 4 C 1.52996 * 109.47295 * 240.00394 * 2 1 3 5 5 N 1.46499 * 109.47173 * 119.99975 * 2 1 3 6 6 C 1.34582 * 125.74987 * 75.00445 * 5 2 1 7 7 N 1.30872 * 107.62602 * 180.02562 * 6 5 2 8 8 C 1.34544 * 107.26797 * 359.97438 * 7 6 5 9 9 C 1.47868 * 126.04720 * 180.02562 * 8 7 6 10 10 O 1.21554 * 120.00146 * 179.97438 * 9 8 7 11 11 N 1.34777 * 120.00091 * 359.95728 * 9 8 7 12 12 C 1.46496 * 120.00208 * 180.02562 * 11 9 8 13 13 C 1.53949 * 113.74148 * 253.73992 * 12 11 9 14 14 N 1.47814 * 86.03750 * 222.08203 * 13 12 11 15 15 C 1.36931 * 134.45858 * 204.64381 * 14 13 12 16 16 H 1.07995 * 120.00266 * 179.87207 * 15 14 13 17 17 C 1.38817 * 120.00016 * 359.86678 * 15 14 13 18 18 N 1.31616 * 119.99701 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00067 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46847 * 60.00152 * 19 17 15 21 21 H 1.48498 * 109.47016 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47184 * 300.00228 * 19 17 15 23 23 C 1.47583 * 91.05098 * 24.54903 * 14 13 12 24 24 N 1.28856 * 125.74587 * 255.03367 * 5 2 1 25 25 H 1.08995 * 109.47564 * 299.99411 * 1 2 3 26 26 H 1.08999 * 109.47182 * 60.00488 * 1 2 3 27 27 H 1.08997 * 109.46517 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47046 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47296 * 300.00333 * 3 2 1 30 30 H 1.09002 * 109.46974 * 60.00251 * 3 2 1 31 31 H 1.09000 * 109.46880 * 299.99782 * 4 2 1 32 32 H 1.08996 * 109.47366 * 59.99825 * 4 2 1 33 33 H 1.09004 * 109.46756 * 179.97438 * 4 2 1 34 34 H 1.07997 * 126.18604 * 0.03540 * 6 5 2 35 35 H 0.97002 * 119.99819 * 0.02562 * 11 9 8 36 36 H 1.09005 * 112.94620 * 25.32862 * 12 11 9 37 37 H 1.08996 * 113.77150 * 336.35072 * 13 12 11 38 38 H 1.09007 * 113.76588 * 107.74708 * 13 12 11 39 39 H 0.96998 * 120.00051 * 179.97438 * 18 17 15 40 40 H 1.09000 * 113.77058 * 221.15122 * 23 14 13 41 41 H 1.09001 * 113.77057 * 89.75143 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7211 -1.2492 5 7 2.0184 -0.6906 1.1962 6 6 2.0141 -2.0220 1.3922 7 7 2.5275 -2.2502 2.5742 8 6 2.8492 -1.0574 3.1070 9 6 3.4600 -0.8337 4.4349 10 8 3.7063 0.2966 4.8080 11 7 3.7434 -1.8831 5.2317 12 6 4.3480 -1.6616 6.5475 13 6 5.8378 -2.0433 6.6173 14 7 5.5188 -2.6360 7.9332 15 6 6.2430 -2.9101 9.0626 16 1 5.7600 -3.3580 9.9184 17 6 7.5981 -2.6123 9.1075 18 7 8.1866 -2.0660 8.0647 19 14 8.5859 -2.9855 10.6484 20 1 8.5291 -4.4421 10.9320 21 1 9.9982 -2.5755 10.4424 22 1 8.0154 -2.2352 11.7959 23 6 4.1065 -2.8115 7.5423 24 7 2.5240 -0.1255 2.2380 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 3.1299 1.4427 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9564 0.8900 31 1 1.6768 -1.7488 -1.2493 32 1 1.6768 -0.2073 -2.1392 33 1 3.1301 -0.7207 -1.2494 34 1 1.6525 -2.7674 0.6994 35 1 3.5469 -2.7852 4.9339 36 1 4.1282 -0.6749 6.9555 37 1 6.1395 -2.7746 5.8675 38 1 6.5089 -1.1859 6.6714 39 1 9.1334 -1.8575 8.0961 40 1 3.3979 -2.5665 8.3334 41 1 3.8986 -3.7690 7.0647 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030952531.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:28 Heat of formation + Delta-G solvation = 113.421375 kcal Electronic energy + Delta-G solvation = -23080.583805 eV Core-core repulsion = 19613.787094 eV Total energy + Delta-G solvation = -3466.796712 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.57130 -39.32405 -37.74672 -37.23478 -33.57956 -32.62932 -31.73570 -30.98816 -28.08816 -27.96287 -27.49405 -24.93379 -24.75025 -23.16028 -22.60539 -20.38632 -20.20489 -19.53596 -17.72361 -16.73661 -16.66413 -16.53638 -15.92112 -15.01484 -14.90031 -14.65955 -14.61194 -14.02579 -13.78093 -13.69701 -13.25029 -12.98672 -12.83603 -12.61594 -12.35371 -12.21560 -11.85709 -11.82866 -11.47630 -11.39022 -11.38191 -10.84300 -10.73355 -10.49437 -10.43755 -10.39875 -10.04657 -9.78005 -9.58037 -9.47824 -8.75471 -8.37240 -6.86626 -5.71868 -3.05806 1.44560 1.96409 2.11506 3.31485 3.44543 3.47912 3.49593 3.62891 3.86146 4.10042 4.12828 4.21984 4.49420 4.57488 4.82073 4.85591 4.99909 5.03643 5.11882 5.18494 5.23397 5.27595 5.38465 5.53542 5.56511 5.63843 5.78039 5.96615 6.08764 6.27132 6.28382 6.42780 6.48686 6.61952 6.80729 7.29643 7.41427 7.60726 7.81538 8.01441 8.10666 8.55648 9.07808 9.74190 10.61258 11.44846 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.043035 B = 0.002712 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.481775 B =10322.693294 C =10451.745616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.167 3.833 3 C -0.149 4.149 4 C -0.160 4.160 5 N -0.295 5.295 6 C 0.185 3.815 7 N -0.483 5.483 8 C 0.146 3.854 9 C 0.610 3.390 10 O -0.523 6.523 11 N -0.693 5.693 12 C 0.092 3.908 13 C 0.155 3.845 14 N -0.607 5.607 15 C -0.225 4.225 16 H 0.082 0.918 17 C -0.007 4.007 18 N -0.919 5.919 19 Si 0.915 3.085 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.284 1.284 23 C 0.114 3.886 24 N -0.249 5.249 25 H 0.069 0.931 26 H 0.085 0.915 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.220 0.780 35 H 0.406 0.594 36 H 0.113 0.887 37 H 0.031 0.969 38 H 0.078 0.922 39 H 0.255 0.745 40 H 0.051 0.949 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.256 1.846 -22.290 28.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.085 3.915 3 C -0.207 4.207 4 C -0.218 4.218 5 N -0.092 5.092 6 C -0.110 4.110 7 N -0.208 5.208 8 C -0.134 4.134 9 C 0.391 3.609 10 O -0.396 6.396 11 N -0.344 5.344 12 C -0.013 4.013 13 C 0.028 3.972 14 N -0.334 5.334 15 C -0.352 4.352 16 H 0.099 0.901 17 C -0.204 4.204 18 N -0.565 5.565 19 Si 0.745 3.255 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.210 1.210 23 C -0.013 4.013 24 N -0.088 5.088 25 H 0.088 0.912 26 H 0.103 0.897 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.236 0.764 35 H 0.241 0.759 36 H 0.131 0.869 37 H 0.048 0.952 38 H 0.096 0.904 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -16.600 3.043 -21.490 27.324 hybrid contribution 0.375 -1.017 0.190 1.100 sum -16.225 2.027 -21.300 26.852 Atomic orbital electron populations 1.22262 0.91813 1.03583 1.04100 1.21139 0.95239 0.94391 0.80734 1.22000 1.02727 0.92224 1.03735 1.22260 1.02814 1.01106 0.95646 1.47772 1.41743 1.06239 1.13478 1.26280 1.01949 0.86449 0.96331 1.71291 1.16379 1.26083 1.07062 1.23983 1.05782 0.85450 0.98230 1.16348 0.78183 0.85383 0.80952 1.90823 1.52962 1.22601 1.73181 1.45871 1.61752 1.08915 1.17865 1.24023 0.96402 1.00730 0.80101 1.22729 0.91382 0.96881 0.86191 1.45703 1.04001 1.72093 1.11575 1.18933 0.90627 1.35476 0.90206 0.90070 1.24825 0.96478 1.01228 0.97852 1.69822 1.10650 1.47141 1.28890 0.86164 0.79217 0.77930 0.82207 1.21166 1.21557 1.21005 1.22871 0.89239 0.94779 0.94390 1.74311 1.13545 1.25472 0.95424 0.91210 0.89654 0.91365 0.91167 0.90390 0.90467 0.91134 0.89385 0.91064 0.76394 0.75878 0.86919 0.95159 0.90382 0.93495 0.93091 0.94451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.72 8.72 37.16 0.32 -0.40 16 2 C 0.17 1.06 1.23 -131.81 -0.16 0.90 16 3 C -0.15 -1.03 8.04 37.16 0.30 -0.73 16 4 C -0.16 -0.60 8.28 37.16 0.31 -0.29 16 5 N -0.30 -3.09 3.17 -49.83 -0.16 -3.24 16 6 C 0.19 1.82 11.71 -90.48 -1.06 0.76 16 7 N -0.48 -6.69 11.09 -12.37 -0.14 -6.83 16 8 C 0.15 2.40 7.96 -156.36 -1.24 1.16 16 9 C 0.61 11.67 7.83 -12.32 -0.10 11.57 16 10 O -0.52 -11.73 16.71 5.32 0.09 -11.64 16 11 N -0.69 -12.47 5.37 -56.27 -0.30 -12.77 16 12 C 0.09 1.92 4.40 -70.13 -0.31 1.61 16 13 C 0.15 3.87 7.33 -2.84 -0.02 3.85 16 14 N -0.61 -16.11 3.70 -177.85 -0.66 -16.77 16 15 C -0.22 -6.47 10.70 -15.06 -0.16 -6.63 16 16 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 17 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 18 N -0.92 -28.13 11.39 55.49 0.63 -27.50 16 19 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 C 0.11 2.39 8.69 -2.96 -0.03 2.36 16 24 N -0.25 -3.75 11.09 32.07 0.36 -3.40 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 27 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.68 8.02 -51.93 -0.42 0.26 16 31 H 0.07 0.17 7.34 -51.93 -0.38 -0.21 16 32 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.22 1.05 7.53 -52.49 -0.39 0.65 16 35 H 0.41 6.49 8.42 -40.82 -0.34 6.14 16 36 H 0.11 2.49 7.51 -51.93 -0.39 2.10 16 37 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.08 2.20 7.17 -51.92 -0.37 1.83 16 39 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.04 0.73 8.11 -51.93 -0.42 0.31 16 LS Contribution 347.30 15.07 5.23 5.23 Total: -1.00 -36.56 347.30 -8.28 -44.85 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -6.07 Total: 0.62 kcal Atomic # 6 Polarization: 16.11 SS G_CDS: -2.24 Total: 13.87 kcal Atomic # 7 Polarization: -70.24 SS G_CDS: -0.27 Total: -70.51 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.09 Total: -11.64 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -36.56 -8.28 -44.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030952531.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.266 kcal (2) G-P(sol) polarization free energy of solvation -36.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds