Wall clock time and date at job start Tue Mar 31 2020 03:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53006 * 109.46606 * 2 1 4 4 C 1.52996 * 109.47295 * 240.00394 * 2 1 3 5 5 N 1.46499 * 109.47173 * 119.99975 * 2 1 3 6 6 C 1.34582 * 125.74987 * 75.00445 * 5 2 1 7 7 N 1.30872 * 107.62602 * 180.02562 * 6 5 2 8 8 C 1.34544 * 107.26797 * 359.97438 * 7 6 5 9 9 C 1.47868 * 126.04720 * 180.02562 * 8 7 6 10 10 O 1.21554 * 120.00146 * 179.97438 * 9 8 7 11 11 N 1.34777 * 120.00091 * 359.95728 * 9 8 7 12 12 C 1.46496 * 120.00208 * 180.02562 * 11 9 8 13 13 C 1.53949 * 113.74148 * 253.73992 * 12 11 9 14 14 N 1.47814 * 86.03750 * 222.08203 * 13 12 11 15 15 C 1.36931 * 134.45858 * 204.64381 * 14 13 12 16 16 H 1.07995 * 120.00266 * 179.87207 * 15 14 13 17 17 C 1.38817 * 120.00016 * 359.86678 * 15 14 13 18 18 N 1.31616 * 119.99701 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00067 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46847 * 60.00152 * 19 17 15 21 21 H 1.48498 * 109.47016 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47184 * 300.00228 * 19 17 15 23 23 C 1.47583 * 91.05098 * 24.54903 * 14 13 12 24 24 N 1.28856 * 125.74587 * 255.03367 * 5 2 1 25 25 H 1.08995 * 109.47564 * 299.99411 * 1 2 3 26 26 H 1.08999 * 109.47182 * 60.00488 * 1 2 3 27 27 H 1.08997 * 109.46517 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47046 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.47296 * 300.00333 * 3 2 1 30 30 H 1.09002 * 109.46974 * 60.00251 * 3 2 1 31 31 H 1.09000 * 109.46880 * 299.99782 * 4 2 1 32 32 H 1.08996 * 109.47366 * 59.99825 * 4 2 1 33 33 H 1.09004 * 109.46756 * 179.97438 * 4 2 1 34 34 H 1.07997 * 126.18604 * 0.03540 * 6 5 2 35 35 H 0.97002 * 119.99819 * 0.02562 * 11 9 8 36 36 H 1.09005 * 112.94620 * 25.32862 * 12 11 9 37 37 H 1.08996 * 113.77150 * 336.35072 * 13 12 11 38 38 H 1.09007 * 113.76588 * 107.74708 * 13 12 11 39 39 H 0.96998 * 120.00051 * 179.97438 * 18 17 15 40 40 H 1.09000 * 113.77058 * 221.15122 * 23 14 13 41 41 H 1.09001 * 113.77057 * 89.75143 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7211 -1.2492 5 7 2.0184 -0.6906 1.1962 6 6 2.0141 -2.0220 1.3922 7 7 2.5275 -2.2502 2.5742 8 6 2.8492 -1.0574 3.1070 9 6 3.4600 -0.8337 4.4349 10 8 3.7063 0.2966 4.8080 11 7 3.7434 -1.8831 5.2317 12 6 4.3480 -1.6616 6.5475 13 6 5.8378 -2.0433 6.6173 14 7 5.5188 -2.6360 7.9332 15 6 6.2430 -2.9101 9.0626 16 1 5.7600 -3.3580 9.9184 17 6 7.5981 -2.6123 9.1075 18 7 8.1866 -2.0660 8.0647 19 14 8.5859 -2.9855 10.6484 20 1 8.5291 -4.4421 10.9320 21 1 9.9982 -2.5755 10.4424 22 1 8.0154 -2.2352 11.7959 23 6 4.1065 -2.8115 7.5423 24 7 2.5240 -0.1255 2.2380 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 3.1299 1.4427 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9564 0.8900 31 1 1.6768 -1.7488 -1.2493 32 1 1.6768 -0.2073 -2.1392 33 1 3.1301 -0.7207 -1.2494 34 1 1.6525 -2.7674 0.6994 35 1 3.5469 -2.7852 4.9339 36 1 4.1282 -0.6749 6.9555 37 1 6.1395 -2.7746 5.8675 38 1 6.5089 -1.1859 6.6714 39 1 9.1334 -1.8575 8.0961 40 1 3.3979 -2.5665 8.3334 41 1 3.8986 -3.7690 7.0647 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030952531.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:40:28 Heat of formation + Delta-G solvation = 87.416383 kcal Electronic energy + Delta-G solvation = -23081.711466 eV Core-core repulsion = 19613.787094 eV Total energy + Delta-G solvation = -3467.924373 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.52394 -40.94302 -39.21716 -38.17494 -35.26798 -33.96169 -33.40533 -31.99202 -29.52490 -28.45340 -28.37650 -26.65015 -26.34784 -24.38059 -23.98125 -21.64755 -21.38448 -21.05632 -18.83513 -18.76713 -17.63508 -17.57321 -17.34970 -16.94292 -16.08817 -15.85917 -15.70204 -15.26511 -15.01156 -14.88647 -14.57463 -13.79489 -13.72072 -13.36349 -13.26981 -13.22922 -13.22465 -13.00423 -12.81228 -12.74934 -12.64328 -12.38321 -12.33134 -11.98602 -11.98066 -11.55859 -11.46695 -11.40288 -11.37398 -10.87921 -10.58375 -10.03383 -8.98667 -7.91202 -5.27379 0.32435 1.12192 1.17564 1.46061 1.50981 1.56943 1.99815 2.25730 2.48916 3.07244 3.23721 3.29316 3.42958 3.68318 3.78297 3.80558 3.81495 3.91015 4.27656 4.48273 4.57424 4.60684 4.62479 4.70952 4.74165 4.79908 4.82334 4.88877 4.93238 5.05805 5.12397 5.18795 5.21440 5.24343 5.39033 5.46445 5.61070 5.72324 5.87777 6.39073 6.87345 6.97671 7.13343 7.57891 8.50553 9.25631 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.043035 B = 0.002712 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.481775 B =10322.693294 C =10451.745616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.156 3.844 3 C -0.150 4.150 4 C -0.156 4.156 5 N -0.287 5.287 6 C 0.202 3.798 7 N -0.502 5.502 8 C 0.116 3.884 9 C 0.610 3.390 10 O -0.567 6.567 11 N -0.680 5.680 12 C 0.118 3.882 13 C 0.153 3.847 14 N -0.637 5.637 15 C -0.236 4.236 16 H 0.093 0.907 17 C -0.071 4.071 18 N -0.957 5.957 19 Si 0.987 3.013 20 H -0.273 1.273 21 H -0.296 1.296 22 H -0.274 1.274 23 C 0.125 3.875 24 N -0.273 5.273 25 H 0.045 0.955 26 H 0.114 0.886 27 H 0.084 0.916 28 H 0.048 0.952 29 H 0.111 0.889 30 H 0.050 0.950 31 H 0.092 0.908 32 H 0.115 0.885 33 H 0.054 0.946 34 H 0.274 0.726 35 H 0.419 0.581 36 H 0.098 0.902 37 H 0.025 0.975 38 H 0.036 0.964 39 H 0.249 0.751 40 H 0.071 0.929 41 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.597 0.148 -24.203 31.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.076 3.924 3 C -0.208 4.208 4 C -0.214 4.214 5 N -0.084 5.084 6 C -0.092 4.092 7 N -0.228 5.228 8 C -0.162 4.162 9 C 0.393 3.607 10 O -0.443 6.443 11 N -0.331 5.331 12 C 0.012 3.988 13 C 0.026 3.974 14 N -0.364 5.364 15 C -0.364 4.364 16 H 0.111 0.889 17 C -0.264 4.264 18 N -0.605 5.605 19 Si 0.814 3.186 20 H -0.198 1.198 21 H -0.223 1.223 22 H -0.200 1.200 23 C 0.000 4.000 24 N -0.113 5.113 25 H 0.065 0.935 26 H 0.132 0.868 27 H 0.103 0.897 28 H 0.067 0.933 29 H 0.129 0.871 30 H 0.069 0.931 31 H 0.111 0.889 32 H 0.133 0.867 33 H 0.074 0.926 34 H 0.289 0.711 35 H 0.256 0.744 36 H 0.116 0.884 37 H 0.043 0.957 38 H 0.054 0.946 39 H 0.057 0.943 40 H 0.089 0.911 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -19.004 1.308 -23.431 30.198 hybrid contribution 0.983 -0.451 0.595 1.234 sum -18.021 0.857 -22.836 29.103 Atomic orbital electron populations 1.22282 0.89860 1.04746 1.04375 1.21686 0.96640 0.93902 0.80180 1.22026 1.01367 0.93275 1.04091 1.22310 1.01847 1.02434 0.94780 1.48222 1.40138 1.06863 1.13132 1.27246 0.99484 0.86926 0.95539 1.71219 1.17567 1.25178 1.08878 1.23341 1.08202 0.86992 0.97690 1.16696 0.77366 0.84658 0.81943 1.90787 1.54813 1.24220 1.74475 1.45579 1.61192 1.09557 1.16788 1.23383 0.93562 1.00242 0.81585 1.22585 0.93322 0.95304 0.86157 1.46021 1.06363 1.72586 1.11409 1.19423 0.91188 1.34468 0.91328 0.88918 1.25775 0.97801 1.01695 1.01142 1.70046 1.10388 1.48885 1.31178 0.85038 0.76933 0.78216 0.78433 1.19840 1.22256 1.19997 1.23000 0.86769 0.95601 0.94619 1.74230 1.14063 1.26394 0.96624 0.93541 0.86778 0.89749 0.93285 0.87060 0.93081 0.88893 0.86694 0.92642 0.71072 0.74353 0.88374 0.95686 0.94575 0.94253 0.91127 0.91580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 8.72 71.98 0.63 -0.26 16 2 C 0.16 1.59 1.23 3.61 0.00 1.59 16 3 C -0.15 -1.95 8.04 71.98 0.58 -1.37 16 4 C -0.16 -0.55 8.28 71.98 0.60 0.04 16 5 N -0.29 -5.52 3.17 -311.58 -0.99 -6.50 16 6 C 0.20 3.39 11.71 180.30 2.11 5.50 16 7 N -0.50 -13.22 11.09 -193.04 -2.14 -15.36 16 8 C 0.12 3.87 7.96 137.13 1.09 4.96 16 9 C 0.61 24.11 7.83 86.79 0.68 24.79 16 10 O -0.57 -26.83 16.71 -3.89 -0.06 -26.89 16 11 N -0.68 -24.73 5.37 -450.22 -2.42 -27.15 16 12 C 0.12 5.02 4.40 46.75 0.21 5.22 16 13 C 0.15 7.99 7.33 86.44 0.63 8.62 16 14 N -0.64 -34.13 3.70 -716.60 -2.65 -36.79 16 15 C -0.24 -13.63 10.70 84.04 0.90 -12.73 16 16 H 0.09 4.99 7.83 -2.91 -0.02 4.97 16 17 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 18 N -0.96 -60.70 11.39 21.65 0.25 -60.45 16 19 Si 0.99 47.05 29.55 68.60 2.03 49.08 16 20 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 21 H -0.30 -14.29 7.11 99.48 0.71 -13.59 16 22 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 23 C 0.13 5.12 8.69 86.49 0.75 5.87 16 24 N -0.27 -8.29 11.09 -52.44 -0.58 -8.87 16 25 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 27 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 28 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.05 0.93 8.02 -2.39 -0.02 0.91 16 31 H 0.09 -0.06 7.34 -2.39 -0.02 -0.07 16 32 H 0.11 -0.15 8.14 -2.39 -0.02 -0.17 16 33 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.27 1.13 7.53 -2.91 -0.02 1.10 16 35 H 0.42 13.12 8.42 -92.71 -0.78 12.34 16 36 H 0.10 4.51 7.51 -2.38 -0.02 4.49 16 37 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.04 2.17 7.17 -2.38 -0.02 2.15 16 39 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 40 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 41 H 0.07 2.39 8.11 -2.39 -0.02 2.37 16 Total: -1.00 -84.69 347.30 2.33 -82.35 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: 0.26 Total: 12.08 kcal Atomic # 6 Polarization: 29.85 SS G_CDS: 8.65 Total: 38.50 kcal Atomic # 7 Polarization: -146.58 SS G_CDS: -8.53 Total: -155.12 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -0.06 Total: -26.89 kcal Atomic # 14 Polarization: 47.05 SS G_CDS: 2.03 Total: 49.08 kcal Total: -84.69 2.33 -82.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030952531.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.769 kcal (2) G-P(sol) polarization free energy of solvation -84.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds