Wall clock time and date at job start Tue Mar 31 2020 03:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47505 * 2 1 4 4 N 1.46502 * 109.47444 * 179.97438 * 3 2 1 5 5 C 1.34812 * 126.58906 * 124.70729 * 4 3 2 6 6 C 1.36600 * 106.83528 * 179.91148 * 5 4 3 7 7 C 1.47525 * 125.76847 * 180.17628 * 6 5 4 8 8 O 1.21593 * 120.00276 * 0.24800 * 7 6 5 9 9 N 1.34778 * 119.99727 * 180.24937 * 7 6 5 10 10 C 1.46500 * 119.99821 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47182 * 180.02562 * 10 9 7 12 12 C 1.53947 * 113.74309 * 273.74182 * 11 10 9 13 13 N 1.47811 * 86.03741 * 222.08401 * 12 11 10 14 14 C 1.36938 * 134.45565 * 204.64118 * 13 12 11 15 15 H 1.08000 * 119.99802 * 173.34266 * 14 13 12 16 16 C 1.38817 * 119.99903 * 353.35220 * 14 13 12 17 17 N 1.31616 * 120.00147 * 5.06112 * 16 14 13 18 18 Si 1.86798 * 119.99712 * 185.05836 * 16 14 13 19 19 H 1.48503 * 109.46914 * 94.98897 * 18 16 14 20 20 H 1.48496 * 109.47378 * 214.98400 * 18 16 14 21 21 H 1.48496 * 109.47424 * 334.99203 * 18 16 14 22 22 C 1.47579 * 91.05212 * 24.54710 * 13 12 11 23 23 N 1.34402 * 108.46055 * 0.36565 * 6 5 4 24 24 N 1.28764 * 109.52182 * 359.77630 * 23 6 5 25 25 H 1.08995 * 109.47138 * 299.99976 * 1 2 3 26 26 H 1.08997 * 109.47003 * 59.99673 * 1 2 3 27 27 H 1.09002 * 109.47067 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47457 * 120.00032 * 2 1 3 29 29 H 1.09004 * 109.47231 * 239.99846 * 2 1 3 30 30 H 1.08997 * 109.47257 * 300.00172 * 3 2 1 31 31 H 1.09008 * 109.46763 * 60.00158 * 3 2 1 32 32 H 1.07999 * 126.58336 * 0.02562 * 5 4 3 33 33 H 0.97003 * 120.00237 * 0.02562 * 9 7 6 34 34 H 1.09005 * 109.47363 * 300.00140 * 10 9 7 35 35 H 1.09000 * 109.47244 * 59.99771 * 10 9 7 36 36 H 1.09004 * 112.94353 * 45.33519 * 11 10 9 37 37 H 1.09004 * 113.76844 * 336.35184 * 12 11 10 38 38 H 1.08998 * 113.76692 * 107.74100 * 12 11 10 39 39 H 0.96998 * 120.00324 * 180.02562 * 17 16 14 40 40 H 1.09001 * 113.77054 * 221.15060 * 22 13 12 41 41 H 1.09002 * 113.76681 * 89.75225 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.3090 2.0587 -0.8890 6 6 5.5945 1.7975 -0.5077 7 6 6.8109 2.2765 -1.1913 8 8 6.7164 2.9721 -2.1841 9 7 8.0269 1.9431 -0.7153 10 6 9.2349 2.4183 -1.3944 11 6 10.4715 1.9010 -0.6569 12 6 10.9190 2.8004 0.5096 13 7 12.2964 2.5653 0.0278 14 6 13.5349 2.5961 0.6113 15 1 14.4026 2.2756 0.0537 16 6 13.6751 3.0390 1.9194 17 7 12.6087 3.3348 2.6319 18 14 15.3772 3.2153 2.6684 19 1 15.8412 4.6180 2.5182 20 1 15.3225 2.8639 4.1101 21 1 16.3211 2.3045 1.9723 22 6 11.8010 2.2818 -1.3332 23 7 5.5637 1.0269 0.5930 24 7 4.3405 0.7964 0.9228 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 3.9967 2.6474 -1.7388 33 1 8.1023 1.3878 0.0765 34 1 9.2436 2.0501 -2.4204 35 1 9.2439 3.5082 -1.3995 36 1 10.3992 0.8455 -0.3945 37 1 10.5917 3.8360 0.4165 38 1 10.7179 2.3764 1.4934 39 1 12.7066 3.6447 3.5458 40 1 12.3031 1.4445 -1.8179 41 1 11.7334 3.1647 -1.9688 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032080975.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:26 Heat of formation + Delta-G solvation = 106.663744 kcal Electronic energy + Delta-G solvation = -22360.733099 eV Core-core repulsion = 18893.643355 eV Total energy + Delta-G solvation = -3467.089744 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.35786 -39.31124 -37.85813 -36.37431 -34.37394 -32.97431 -32.13132 -31.07950 -28.83064 -27.45056 -25.88612 -24.73282 -23.59361 -23.02355 -21.87860 -21.70926 -20.31776 -19.13363 -17.99941 -16.71502 -16.50351 -16.30700 -15.93267 -15.53793 -15.07850 -14.85934 -14.65875 -14.26723 -14.01938 -13.71935 -13.24500 -13.22810 -12.78776 -12.63984 -12.38372 -12.28624 -12.02798 -11.57058 -11.38369 -11.29128 -11.26974 -10.94608 -10.69256 -10.56855 -10.52222 -10.12915 -9.77863 -9.69880 -9.45482 -9.37390 -8.76299 -8.72810 -6.81472 -5.73399 -3.04563 0.95957 1.65755 1.77408 3.29746 3.36966 3.42672 3.47552 3.49790 3.88796 4.08091 4.18191 4.46388 4.49938 4.61130 4.66339 4.78771 4.84692 5.00108 5.15061 5.21530 5.38052 5.39865 5.40202 5.45711 5.61097 5.66094 5.73134 5.90789 6.09412 6.12313 6.29506 6.41233 6.60701 6.70235 6.80643 7.28752 7.40618 7.59873 7.62206 7.87891 8.02566 8.31883 9.09130 9.75326 10.65747 11.44373 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.031483 B = 0.002473 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.145850 B =11320.097143 C =11930.710093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.139 4.139 3 C 0.121 3.879 4 N -0.364 5.364 5 C 0.090 3.910 6 C -0.097 4.097 7 C 0.600 3.400 8 O -0.547 6.547 9 N -0.704 5.704 10 C 0.130 3.870 11 C -0.154 4.154 12 C 0.171 3.829 13 N -0.613 5.613 14 C -0.223 4.223 15 H 0.080 0.920 16 C -0.008 4.008 17 N -0.919 5.919 18 Si 0.910 3.090 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.280 1.280 22 C 0.129 3.871 23 N -0.201 5.201 24 N -0.064 5.064 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.204 0.796 33 H 0.410 0.590 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.029 0.971 38 H 0.069 0.931 39 H 0.254 0.746 40 H 0.045 0.955 41 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.662 -5.082 -7.567 27.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.177 4.177 3 C 0.000 4.000 4 N -0.149 5.149 5 C -0.067 4.067 6 C -0.237 4.237 7 C 0.384 3.616 8 O -0.425 6.425 9 N -0.354 5.354 10 C 0.007 3.993 11 C -0.174 4.174 12 C 0.046 3.954 13 N -0.339 5.339 14 C -0.351 4.351 15 H 0.098 0.902 16 C -0.205 4.205 17 N -0.566 5.566 18 Si 0.740 3.260 19 H -0.217 1.217 20 H -0.217 1.217 21 H -0.206 1.206 22 C 0.002 3.998 23 N -0.075 5.075 24 N -0.044 5.044 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.101 0.899 29 H 0.090 0.910 30 H 0.123 0.877 31 H 0.117 0.883 32 H 0.221 0.779 33 H 0.246 0.754 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.047 0.953 38 H 0.087 0.913 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -25.438 -5.403 -6.750 26.867 hybrid contribution 0.730 0.676 -0.010 0.995 sum -24.708 -4.727 -6.760 26.048 Atomic orbital electron populations 1.21703 0.93856 1.02887 1.02341 1.21839 0.96945 0.94595 1.04303 1.22153 0.72612 1.00073 1.05161 1.50575 1.08792 1.35474 1.20012 1.23375 0.90186 0.97191 0.95929 1.21573 0.94708 1.08311 0.99075 1.16756 0.81885 0.79829 0.83125 1.90790 1.86786 1.38962 1.25934 1.45872 1.05092 1.52704 1.31687 1.21519 0.82390 0.99578 0.95852 1.23833 0.92373 1.01215 1.00012 1.22297 0.83116 0.94576 0.95403 1.45963 1.02553 1.81535 1.03888 1.19027 0.83670 1.36815 0.95591 0.90225 1.24830 0.97332 1.01421 0.96911 1.69832 1.26901 1.50566 1.09287 0.86132 0.83590 0.77824 0.78451 1.21675 1.21729 1.20561 1.22491 0.90389 0.97166 0.89749 1.74687 1.12791 1.09948 1.10063 1.81986 0.93400 1.17239 1.11822 0.92054 0.92241 0.91627 0.89947 0.91020 0.87723 0.88306 0.77938 0.75414 0.91671 0.91108 0.89089 0.95284 0.91313 0.93644 0.93694 0.94633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.42 9.91 37.15 0.37 -0.05 16 2 C -0.14 -0.63 6.14 -26.73 -0.16 -0.79 16 3 C 0.12 0.55 6.54 -4.04 -0.03 0.52 16 4 N -0.36 -3.28 3.69 -61.06 -0.23 -3.50 16 5 C 0.09 0.88 11.27 -16.83 -0.19 0.69 16 6 C -0.10 -1.29 6.99 -83.55 -0.58 -1.88 16 7 C 0.60 9.20 7.82 -12.47 -0.10 9.10 16 8 O -0.55 -9.47 16.86 5.28 0.09 -9.38 16 9 N -0.70 -10.74 5.55 -61.35 -0.34 -11.08 16 10 C 0.13 2.09 5.51 -4.04 -0.02 2.07 16 11 C -0.15 -2.85 3.93 -89.69 -0.35 -3.20 16 12 C 0.17 4.06 6.99 -2.84 -0.02 4.04 16 13 N -0.61 -16.03 3.70 -177.69 -0.66 -16.68 16 14 C -0.22 -6.40 10.70 -15.06 -0.16 -6.56 16 15 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 16 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 17 N -0.92 -27.84 11.51 55.49 0.64 -27.20 16 18 Si 0.91 22.54 29.56 -169.99 -5.02 17.51 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 C 0.13 2.64 8.51 -2.97 -0.03 2.61 16 23 N -0.20 -2.87 12.04 32.85 0.40 -2.47 16 24 N -0.06 -0.81 13.65 60.35 0.82 0.01 16 25 H 0.06 0.15 8.14 -51.93 -0.42 -0.28 16 26 H 0.06 0.12 8.14 -51.93 -0.42 -0.31 16 27 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.10 0.19 8.08 -51.93 -0.42 -0.23 16 31 H 0.10 0.36 8.14 -51.92 -0.42 -0.06 16 32 H 0.20 1.31 8.06 -52.49 -0.42 0.89 16 33 H 0.41 6.05 8.16 -40.82 -0.33 5.71 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.07 1.21 7.88 -51.93 -0.41 0.80 16 36 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 37 H 0.03 0.72 7.92 -51.93 -0.41 0.31 16 38 H 0.07 1.79 7.37 -51.93 -0.38 1.41 16 39 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.04 0.70 8.10 -51.93 -0.42 0.28 16 LS Contribution 352.67 15.07 5.31 5.31 Total: -1.00 -35.27 352.67 -6.51 -41.78 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -6.15 Total: -0.51 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: -1.37 Total: 6.21 kcal Atomic # 7 Polarization: -61.56 SS G_CDS: 0.63 Total: -60.93 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.09 Total: -9.38 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.27 -6.51 -41.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032080975.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.443 kcal (2) G-P(sol) polarization free energy of solvation -35.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds