Wall clock time and date at job start Tue Mar 31 2020 03:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47505 * 2 1 4 4 N 1.46502 * 109.47444 * 179.97438 * 3 2 1 5 5 C 1.34812 * 126.58906 * 124.70729 * 4 3 2 6 6 C 1.36600 * 106.83528 * 179.91148 * 5 4 3 7 7 C 1.47525 * 125.76847 * 180.17628 * 6 5 4 8 8 O 1.21593 * 120.00276 * 0.24800 * 7 6 5 9 9 N 1.34778 * 119.99727 * 180.24937 * 7 6 5 10 10 C 1.46500 * 119.99821 * 179.97438 * 9 7 6 11 11 C 1.52999 * 109.47182 * 180.02562 * 10 9 7 12 12 C 1.53947 * 113.74309 * 273.74182 * 11 10 9 13 13 N 1.47811 * 86.03741 * 222.08401 * 12 11 10 14 14 C 1.36938 * 134.45565 * 204.64118 * 13 12 11 15 15 H 1.08000 * 119.99802 * 173.34266 * 14 13 12 16 16 C 1.38817 * 119.99903 * 353.35220 * 14 13 12 17 17 N 1.31616 * 120.00147 * 5.06112 * 16 14 13 18 18 Si 1.86798 * 119.99712 * 185.05836 * 16 14 13 19 19 H 1.48503 * 109.46914 * 94.98897 * 18 16 14 20 20 H 1.48496 * 109.47378 * 214.98400 * 18 16 14 21 21 H 1.48496 * 109.47424 * 334.99203 * 18 16 14 22 22 C 1.47579 * 91.05212 * 24.54710 * 13 12 11 23 23 N 1.34402 * 108.46055 * 0.36565 * 6 5 4 24 24 N 1.28764 * 109.52182 * 359.77630 * 23 6 5 25 25 H 1.08995 * 109.47138 * 299.99976 * 1 2 3 26 26 H 1.08997 * 109.47003 * 59.99673 * 1 2 3 27 27 H 1.09002 * 109.47067 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47457 * 120.00032 * 2 1 3 29 29 H 1.09004 * 109.47231 * 239.99846 * 2 1 3 30 30 H 1.08997 * 109.47257 * 300.00172 * 3 2 1 31 31 H 1.09008 * 109.46763 * 60.00158 * 3 2 1 32 32 H 1.07999 * 126.58336 * 0.02562 * 5 4 3 33 33 H 0.97003 * 120.00237 * 0.02562 * 9 7 6 34 34 H 1.09005 * 109.47363 * 300.00140 * 10 9 7 35 35 H 1.09000 * 109.47244 * 59.99771 * 10 9 7 36 36 H 1.09004 * 112.94353 * 45.33519 * 11 10 9 37 37 H 1.09004 * 113.76844 * 336.35184 * 12 11 10 38 38 H 1.08998 * 113.76692 * 107.74100 * 12 11 10 39 39 H 0.96998 * 120.00324 * 180.02562 * 17 16 14 40 40 H 1.09001 * 113.77054 * 221.15060 * 22 13 12 41 41 H 1.09002 * 113.76681 * 89.75225 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 0.0006 5 6 4.3090 2.0587 -0.8890 6 6 5.5945 1.7975 -0.5077 7 6 6.8109 2.2765 -1.1913 8 8 6.7164 2.9721 -2.1841 9 7 8.0269 1.9431 -0.7153 10 6 9.2349 2.4183 -1.3944 11 6 10.4715 1.9010 -0.6569 12 6 10.9190 2.8004 0.5096 13 7 12.2964 2.5653 0.0278 14 6 13.5349 2.5961 0.6113 15 1 14.4026 2.2756 0.0537 16 6 13.6751 3.0390 1.9194 17 7 12.6087 3.3348 2.6319 18 14 15.3772 3.2153 2.6684 19 1 15.8412 4.6180 2.5182 20 1 15.3225 2.8639 4.1101 21 1 16.3211 2.3045 1.9723 22 6 11.8010 2.2818 -1.3332 23 7 5.5637 1.0269 0.5930 24 7 4.3405 0.7964 0.9228 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.6767 1.9564 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 3.9967 2.6474 -1.7388 33 1 8.1023 1.3878 0.0765 34 1 9.2436 2.0501 -2.4204 35 1 9.2439 3.5082 -1.3995 36 1 10.3992 0.8455 -0.3945 37 1 10.5917 3.8360 0.4165 38 1 10.7179 2.3764 1.4934 39 1 12.7066 3.6447 3.5458 40 1 12.3031 1.4445 -1.8179 41 1 11.7334 3.1647 -1.9688 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032080975.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:26 Heat of formation + Delta-G solvation = 80.889315 kcal Electronic energy + Delta-G solvation = -22361.850763 eV Core-core repulsion = 18893.643355 eV Total energy + Delta-G solvation = -3468.207408 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.22173 -40.60772 -39.51449 -36.90986 -35.74997 -34.18662 -33.55913 -32.05765 -30.47949 -28.19290 -27.41712 -26.52711 -24.76793 -23.82964 -23.23794 -22.47292 -21.43746 -20.62697 -19.04167 -18.68648 -17.32269 -17.22079 -17.13352 -16.93655 -16.20870 -16.02430 -15.72225 -15.58544 -15.43664 -14.82469 -14.44202 -14.39413 -13.98637 -13.61011 -13.31128 -13.18485 -13.08271 -12.95009 -12.87848 -12.53587 -12.48664 -12.24733 -12.18477 -11.83275 -11.73391 -11.59109 -11.32783 -11.26354 -11.10411 -10.86143 -10.40505 -9.98520 -8.89870 -7.91305 -5.23691 0.16945 0.62640 1.12842 1.45110 1.47433 1.56400 2.15447 2.26313 2.48130 3.19835 3.29280 3.36465 3.43074 3.75132 3.84187 3.84699 3.97551 4.09282 4.17600 4.24498 4.38493 4.47783 4.54121 4.62250 4.72435 4.80384 4.83297 4.89116 4.90946 5.12106 5.12582 5.18874 5.27116 5.34019 5.39607 5.51998 5.55467 5.66327 5.94360 6.44096 6.91242 6.92306 7.14031 7.61351 8.58167 9.26547 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.031483 B = 0.002473 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.145850 B =11320.097143 C =11930.710093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.135 4.135 3 C 0.110 3.890 4 N -0.349 5.349 5 C 0.112 3.888 6 C -0.126 4.126 7 C 0.604 3.396 8 O -0.569 6.569 9 N -0.706 5.706 10 C 0.142 3.858 11 C -0.118 4.118 12 C 0.168 3.832 13 N -0.646 5.646 14 C -0.235 4.235 15 H 0.086 0.914 16 C -0.071 4.071 17 N -0.954 5.954 18 Si 0.979 3.021 19 H -0.289 1.289 20 H -0.295 1.295 21 H -0.265 1.265 22 C 0.129 3.871 23 N -0.230 5.230 24 N -0.089 5.089 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.143 0.857 31 H 0.112 0.888 32 H 0.241 0.759 33 H 0.412 0.588 34 H 0.085 0.915 35 H 0.060 0.940 36 H 0.100 0.900 37 H 0.014 0.986 38 H 0.036 0.964 39 H 0.248 0.752 40 H 0.064 0.936 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.081 -5.188 -9.231 29.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.173 4.173 3 C -0.008 4.008 4 N -0.133 5.133 5 C -0.046 4.046 6 C -0.266 4.266 7 C 0.389 3.611 8 O -0.448 6.448 9 N -0.356 5.356 10 C 0.018 3.982 11 C -0.138 4.138 12 C 0.043 3.957 13 N -0.373 5.373 14 C -0.363 4.363 15 H 0.104 0.896 16 C -0.264 4.264 17 N -0.603 5.603 18 Si 0.807 3.193 19 H -0.216 1.216 20 H -0.222 1.222 21 H -0.189 1.189 22 C 0.004 3.996 23 N -0.103 5.103 24 N -0.069 5.069 25 H 0.085 0.915 26 H 0.092 0.908 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.161 0.839 31 H 0.130 0.870 32 H 0.257 0.743 33 H 0.248 0.752 34 H 0.103 0.897 35 H 0.079 0.921 36 H 0.118 0.882 37 H 0.032 0.968 38 H 0.054 0.946 39 H 0.057 0.943 40 H 0.082 0.918 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -26.887 -5.541 -8.432 28.718 hybrid contribution 1.037 0.698 0.451 1.329 sum -25.850 -4.843 -7.981 27.484 Atomic orbital electron populations 1.21676 0.92241 1.03066 1.03326 1.21787 0.98206 0.94368 1.02957 1.22671 0.69886 1.00565 1.07725 1.50891 1.10144 1.33722 1.18576 1.23885 0.88913 0.95812 0.95978 1.21490 0.95241 1.10053 0.99859 1.16945 0.82228 0.79181 0.82772 1.90767 1.87158 1.40003 1.26908 1.45844 1.05123 1.52835 1.31790 1.21297 0.81640 0.98884 0.96335 1.23435 0.92937 1.00472 0.96953 1.22197 0.83103 0.94642 0.95794 1.46387 1.02499 1.81660 1.06746 1.19460 0.85086 1.35813 0.95932 0.89636 1.25706 1.01085 1.01983 0.97639 1.70027 1.28956 1.52077 1.09232 0.85052 0.79342 0.77770 0.77159 1.21586 1.22155 1.18895 1.22695 0.90775 0.98260 0.87876 1.74658 1.13874 1.10865 1.10880 1.81902 0.93428 1.18417 1.13193 0.91518 0.90772 0.91923 0.92054 0.91694 0.83918 0.86984 0.74316 0.75237 0.89688 0.92121 0.88162 0.96794 0.94588 0.94319 0.91811 0.93110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.49 9.91 71.98 0.71 0.23 16 2 C -0.13 -1.00 6.14 30.59 0.19 -0.81 16 3 C 0.11 0.69 6.54 86.38 0.56 1.25 16 4 N -0.35 -5.60 3.69 -347.08 -1.28 -6.89 16 5 C 0.11 1.93 11.27 83.85 0.95 2.87 16 6 C -0.13 -3.26 6.99 40.82 0.29 -2.97 16 7 C 0.60 18.03 7.82 86.69 0.68 18.70 16 8 O -0.57 -18.95 16.86 -4.01 -0.07 -19.02 16 9 N -0.71 -21.27 5.55 -466.27 -2.59 -23.86 16 10 C 0.14 4.42 5.51 86.38 0.48 4.90 16 11 C -0.12 -4.29 3.93 -10.13 -0.04 -4.33 16 12 C 0.17 8.17 6.99 86.44 0.60 8.77 16 13 N -0.65 -33.96 3.70 -716.09 -2.65 -36.61 16 14 C -0.23 -13.51 10.70 84.03 0.90 -12.61 16 15 H 0.09 4.67 7.83 -2.91 -0.02 4.65 16 16 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 17 N -0.95 -59.54 11.51 21.65 0.25 -59.29 16 18 Si 0.98 46.92 29.56 68.60 2.03 48.95 16 19 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 20 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 21 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 22 C 0.13 5.11 8.51 86.49 0.74 5.85 16 23 N -0.23 -6.56 12.04 -49.99 -0.60 -7.17 16 24 N -0.09 -2.22 13.65 37.02 0.51 -1.71 16 25 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16 26 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16 27 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 28 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 29 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 30 H 0.14 -0.13 8.08 -2.39 -0.02 -0.15 16 31 H 0.11 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.24 2.15 8.06 -2.91 -0.02 2.12 16 33 H 0.41 12.24 8.16 -92.71 -0.76 11.49 16 34 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 35 H 0.06 2.04 7.88 -2.39 -0.02 2.02 16 36 H 0.10 3.49 8.14 -2.38 -0.02 3.47 16 37 H 0.01 0.72 7.92 -2.38 -0.02 0.70 16 38 H 0.04 1.96 7.37 -2.39 -0.02 1.94 16 39 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 40 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 41 H 0.05 1.90 8.10 -2.39 -0.02 1.88 16 Total: -1.00 -78.30 352.67 2.39 -75.91 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: 0.28 Total: 11.56 kcal Atomic # 6 Polarization: 11.62 SS G_CDS: 6.52 Total: 18.13 kcal Atomic # 7 Polarization: -129.16 SS G_CDS: -6.37 Total: -135.53 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.07 Total: -19.02 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Total: -78.30 2.39 -75.91 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032080975.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.798 kcal (2) G-P(sol) polarization free energy of solvation -78.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds