Wall clock time and date at job start Tue Mar 31 2020 03:00:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21276 * 120.00023 * 2 1 4 4 N 1.34770 * 119.99872 * 179.97438 * 2 1 3 5 5 C 1.47583 * 134.49137 * 179.97438 * 4 2 1 6 6 C 1.53953 * 86.11563 * 155.35800 * 5 4 2 7 7 C 1.50699 * 113.73758 * 137.95306 * 6 5 4 8 8 O 1.21286 * 120.00591 * 1.92335 * 7 6 5 9 9 N 1.34777 * 119.99724 * 181.92850 * 7 6 5 10 10 C 1.47871 * 126.94713 * 0.02562 * 9 7 6 11 11 C 1.56017 * 105.10496 * 181.74304 * 10 9 7 12 12 H 1.09000 * 116.24774 * 158.83632 * 11 10 9 13 13 C 1.57081 * 99.61032 * 32.80364 * 11 10 9 14 14 C 1.49296 * 126.94582 * 179.71227 * 9 7 6 15 15 H 1.09005 * 116.14903 * 16.95429 * 14 9 7 16 16 C 1.56019 * 104.08975 * 246.95760 * 14 9 7 17 17 N 1.47869 * 105.10502 * 288.76283 * 16 14 9 18 18 C 1.36929 * 126.94464 * 182.02212 * 17 16 14 19 19 H 1.07997 * 120.00224 * 173.63218 * 18 17 16 20 20 C 1.38810 * 120.00157 * 353.63445 * 18 17 16 21 21 N 1.31617 * 120.00012 * 6.40791 * 20 18 17 22 22 Si 1.86801 * 120.00079 * 186.41303 * 20 18 17 23 23 H 1.48499 * 109.47700 * 94.98391 * 22 20 18 24 24 H 1.48505 * 109.46945 * 214.98495 * 22 20 18 25 25 H 1.48503 * 109.47279 * 334.98353 * 22 20 18 26 26 C 1.47820 * 134.45969 * 359.86554 * 4 2 1 27 27 H 1.09006 * 109.46803 * 240.00416 * 1 2 3 28 28 H 1.08995 * 109.46944 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.47077 * 120.00184 * 1 2 3 30 30 H 1.09001 * 113.77101 * 41.06170 * 5 4 2 31 31 H 1.08994 * 113.87006 * 269.66953 * 5 4 2 32 32 H 1.09000 * 113.74349 * 269.15381 * 6 5 4 33 33 H 1.09008 * 110.30871 * 300.64839 * 10 9 7 34 34 H 1.08993 * 110.31249 * 62.72733 * 10 9 7 35 35 H 1.09001 * 112.36707 * 64.27205 * 13 11 10 36 36 H 1.08992 * 112.37152 * 191.62380 * 13 11 10 37 37 H 1.09001 * 110.31761 * 47.67260 * 16 14 9 38 38 H 1.08999 * 110.31256 * 169.85796 * 16 14 9 39 39 H 0.97003 * 120.00084 * 179.97438 * 21 20 18 40 40 H 1.09000 * 113.76722 * 90.37650 * 26 4 2 41 41 H 1.08999 * 113.83560 * 318.92159 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6098 -1.5365 0.0002 6 6 3.1596 -2.8617 0.6417 7 6 3.8593 -4.0742 0.0838 8 8 4.7157 -3.9433 -0.7651 9 7 3.5333 -5.3042 0.5280 10 6 2.5194 -5.6400 1.5506 11 6 2.5933 -7.1911 1.7024 12 1 2.2003 -7.6038 2.6315 13 6 4.1252 -7.4084 1.4313 14 6 4.1184 -6.6034 0.0824 15 1 5.0654 -6.5450 -0.4543 16 6 2.9390 -7.3219 -0.6436 17 7 2.0023 -7.7090 0.4331 18 6 0.8299 -8.4026 0.2940 19 1 0.2806 -8.7158 1.1696 20 6 0.3474 -8.7034 -0.9723 21 7 1.0758 -8.4346 -2.0350 22 14 -1.3359 -9.4894 -1.1681 23 1 -2.3492 -8.4334 -1.4196 24 1 -1.3107 -10.4342 -2.3135 25 1 -1.6859 -10.2256 0.0732 26 6 1.7848 -2.5913 0.0036 27 1 -0.3633 -0.5138 0.8901 28 1 -0.3633 1.0276 -0.0005 29 1 -0.3633 -0.5138 -0.8899 30 1 4.2236 -0.9178 0.6548 31 1 4.0350 -1.6531 -0.9966 32 1 3.1498 -2.8406 1.7315 33 1 2.7612 -5.1553 2.4966 34 1 1.5279 -5.3379 1.2139 35 1 4.7514 -6.9400 2.1906 36 1 4.3761 -8.4593 1.2876 37 1 2.4526 -6.6403 -1.3415 38 1 3.3001 -8.2070 -1.1674 39 1 0.7388 -8.6451 -2.9200 40 1 1.6714 -3.0179 -0.9930 41 1 0.9440 -2.8132 0.6608 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032376822.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:44 Heat of formation + Delta-G solvation = 28.253504 kcal Electronic energy + Delta-G solvation = -24238.983047 eV Core-core repulsion = 20736.200428 eV Total energy + Delta-G solvation = -3502.782619 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.82829 -39.74698 -38.29612 -36.93934 -33.71620 -31.79379 -31.11189 -29.38421 -28.71795 -28.33739 -26.25467 -25.30950 -24.22187 -22.81918 -20.34099 -19.91847 -19.07364 -18.51142 -17.63693 -17.04402 -16.56371 -16.13837 -15.69284 -15.43271 -14.80841 -14.72053 -14.12477 -13.59878 -13.42490 -13.31663 -12.96463 -12.71664 -12.70627 -12.41754 -12.21804 -12.08949 -11.91283 -11.70090 -11.43302 -11.12121 -11.08445 -10.95309 -10.85695 -10.67383 -10.34081 -10.14830 -10.04965 -9.73370 -9.51546 -8.84727 -8.75761 -8.11964 -7.00926 -5.86351 -3.20400 2.49377 2.64525 2.81557 3.28447 3.31157 3.36512 3.39431 4.19280 4.34130 4.35276 4.64999 4.81647 4.95315 5.06545 5.09193 5.10567 5.20833 5.27288 5.28513 5.39003 5.47734 5.49518 5.54626 5.55746 5.67924 5.76717 5.82874 5.96351 6.07696 6.19088 6.32529 6.38964 6.50769 6.58811 7.31546 7.41872 7.53580 7.63728 7.96477 8.01545 8.02274 8.43032 9.01521 9.62705 10.31775 11.26029 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015989 B = 0.004662 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.737920 B = 6004.475608 C = 7081.058122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.534 3.466 3 O -0.552 6.552 4 N -0.648 5.648 5 C 0.130 3.870 6 C -0.144 4.144 7 C 0.538 3.462 8 O -0.550 6.550 9 N -0.602 5.602 10 C 0.083 3.917 11 C 0.141 3.859 12 H 0.107 0.893 13 C -0.153 4.153 14 C 0.098 3.902 15 H 0.114 0.886 16 C 0.174 3.826 17 N -0.596 5.596 18 C -0.234 4.234 19 H 0.081 0.919 20 C -0.002 4.002 21 N -0.917 5.917 22 Si 0.910 3.090 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.280 1.280 26 C 0.122 3.878 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.121 0.879 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.084 0.916 37 H 0.051 0.949 38 H 0.052 0.948 39 H 0.254 0.746 40 H 0.096 0.904 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.129 8.298 8.039 11.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.325 3.675 3 O -0.430 6.430 4 N -0.384 5.384 5 C 0.007 3.993 6 C -0.166 4.166 7 C 0.325 3.675 8 O -0.429 6.429 9 N -0.335 5.335 10 C -0.042 4.042 11 C 0.032 3.968 12 H 0.124 0.876 13 C -0.192 4.192 14 C -0.005 4.005 15 H 0.132 0.868 16 C 0.049 3.951 17 N -0.321 5.321 18 C -0.362 4.362 19 H 0.099 0.901 20 C -0.200 4.200 21 N -0.563 5.563 22 Si 0.740 3.260 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.206 1.206 26 C -0.001 4.001 27 H 0.106 0.894 28 H 0.110 0.890 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.119 0.881 32 H 0.139 0.861 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.102 0.898 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.114 0.886 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 1.615 9.099 7.342 11.803 hybrid contribution -1.052 -0.518 -0.228 1.195 sum 0.563 8.581 7.114 11.161 Atomic orbital electron populations 1.21872 0.91212 1.05259 1.04484 1.20499 0.90273 0.81601 0.75099 1.90714 1.70987 1.30485 1.50786 1.50127 1.09198 1.05527 1.73577 1.23026 0.83267 0.90842 1.02121 1.23271 0.97128 0.93830 1.02387 1.19648 0.82888 0.82907 0.82103 1.90688 1.33678 1.85684 1.32861 1.49227 1.38692 1.05261 1.40269 1.23328 0.91546 0.99808 0.89550 1.23164 0.91697 0.89713 0.92246 0.87566 1.24178 0.98088 1.00403 0.96573 1.24375 0.98488 0.80824 0.96798 0.86827 1.21921 0.86601 0.96930 0.89606 1.45228 1.22487 1.64025 1.00327 1.19042 0.96271 1.28380 0.92536 0.90130 1.24827 0.98539 1.01185 0.95408 1.69925 1.36346 1.52471 0.97548 0.86138 0.83878 0.78547 0.77398 1.21609 1.21747 1.20553 1.23174 0.96425 0.78631 1.01843 0.89351 0.88981 0.89315 0.89631 0.88131 0.86068 0.92778 0.90920 0.91617 0.89764 0.93091 0.93016 0.93524 0.88620 0.88862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.52 10.07 36.01 0.36 -1.16 16 2 C 0.53 7.14 8.17 -10.99 -0.09 7.05 16 3 O -0.55 -9.60 17.81 5.56 0.10 -9.50 16 4 N -0.65 -8.15 3.61 -178.18 -0.64 -8.79 16 5 C 0.13 1.66 8.17 -2.96 -0.02 1.64 16 6 C -0.14 -1.75 3.61 -90.83 -0.33 -2.08 16 7 C 0.54 8.61 7.43 -10.99 -0.08 8.52 16 8 O -0.55 -10.64 16.26 5.55 0.09 -10.55 16 9 N -0.60 -9.80 2.95 -156.77 -0.46 -10.26 16 10 C 0.08 1.22 6.01 -1.68 -0.01 1.21 16 11 C 0.14 2.35 5.53 -62.56 -0.35 2.00 16 12 H 0.11 1.58 8.14 -51.93 -0.42 1.16 16 13 C -0.15 -2.36 6.81 -22.30 -0.15 -2.51 16 14 C 0.10 1.73 5.24 -62.55 -0.33 1.41 16 15 H 0.11 1.99 8.06 -51.93 -0.42 1.57 16 16 C 0.17 3.89 4.77 -1.68 -0.01 3.89 16 17 N -0.60 -13.26 3.02 -156.35 -0.47 -13.73 16 18 C -0.23 -5.86 10.36 -15.06 -0.16 -6.01 16 19 H 0.08 1.92 7.84 -52.49 -0.41 1.51 16 20 C 0.00 -0.06 5.49 -17.43 -0.10 -0.16 16 21 N -0.92 -25.48 10.61 55.49 0.59 -24.89 16 22 Si 0.91 20.69 29.56 -169.99 -5.02 15.66 16 23 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 26 C 0.12 1.39 8.18 -2.83 -0.02 1.37 16 27 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.09 0.78 8.12 -51.93 -0.42 0.36 16 29 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.10 1.42 7.43 -51.93 -0.39 1.03 16 32 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.05 1.31 7.53 -51.93 -0.39 0.92 16 38 H 0.05 1.29 7.64 -51.93 -0.40 0.90 16 39 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 40 H 0.10 1.22 8.09 -51.93 -0.42 0.79 16 41 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 LS Contribution 339.41 15.07 5.11 5.11 Total: -1.00 -32.41 339.41 -8.20 -40.61 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -6.21 Total: 1.15 kcal Atomic # 6 Polarization: 16.46 SS G_CDS: -1.28 Total: 15.18 kcal Atomic # 7 Polarization: -56.68 SS G_CDS: -0.99 Total: -57.67 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: 0.19 Total: -20.04 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.41 -8.20 -40.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032376822.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.862 kcal (2) G-P(sol) polarization free energy of solvation -32.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds