Wall clock time and date at job start Tue Mar 31 2020 03:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21276 * 120.00023 * 2 1 4 4 N 1.34770 * 119.99872 * 179.97438 * 2 1 3 5 5 C 1.47583 * 134.49137 * 179.97438 * 4 2 1 6 6 C 1.53953 * 86.11563 * 155.35800 * 5 4 2 7 7 C 1.50699 * 113.73758 * 137.95306 * 6 5 4 8 8 O 1.21286 * 120.00591 * 1.92335 * 7 6 5 9 9 N 1.34777 * 119.99724 * 181.92850 * 7 6 5 10 10 C 1.47871 * 126.94713 * 0.02562 * 9 7 6 11 11 C 1.56017 * 105.10496 * 181.74304 * 10 9 7 12 12 H 1.09000 * 116.24774 * 158.83632 * 11 10 9 13 13 C 1.57081 * 99.61032 * 32.80364 * 11 10 9 14 14 C 1.49296 * 126.94582 * 179.71227 * 9 7 6 15 15 H 1.09005 * 116.14903 * 16.95429 * 14 9 7 16 16 C 1.56019 * 104.08975 * 246.95760 * 14 9 7 17 17 N 1.47869 * 105.10502 * 288.76283 * 16 14 9 18 18 C 1.36929 * 126.94464 * 182.02212 * 17 16 14 19 19 H 1.07997 * 120.00224 * 173.63218 * 18 17 16 20 20 C 1.38810 * 120.00157 * 353.63445 * 18 17 16 21 21 N 1.31617 * 120.00012 * 6.40791 * 20 18 17 22 22 Si 1.86801 * 120.00079 * 186.41303 * 20 18 17 23 23 H 1.48499 * 109.47700 * 94.98391 * 22 20 18 24 24 H 1.48505 * 109.46945 * 214.98495 * 22 20 18 25 25 H 1.48503 * 109.47279 * 334.98353 * 22 20 18 26 26 C 1.47820 * 134.45969 * 359.86554 * 4 2 1 27 27 H 1.09006 * 109.46803 * 240.00416 * 1 2 3 28 28 H 1.08995 * 109.46944 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.47077 * 120.00184 * 1 2 3 30 30 H 1.09001 * 113.77101 * 41.06170 * 5 4 2 31 31 H 1.08994 * 113.87006 * 269.66953 * 5 4 2 32 32 H 1.09000 * 113.74349 * 269.15381 * 6 5 4 33 33 H 1.09008 * 110.30871 * 300.64839 * 10 9 7 34 34 H 1.08993 * 110.31249 * 62.72733 * 10 9 7 35 35 H 1.09001 * 112.36707 * 64.27205 * 13 11 10 36 36 H 1.08992 * 112.37152 * 191.62380 * 13 11 10 37 37 H 1.09001 * 110.31761 * 47.67260 * 16 14 9 38 38 H 1.08999 * 110.31256 * 169.85796 * 16 14 9 39 39 H 0.97003 * 120.00084 * 179.97438 * 21 20 18 40 40 H 1.09000 * 113.76722 * 90.37650 * 26 4 2 41 41 H 1.08999 * 113.83560 * 318.92159 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6098 -1.5365 0.0002 6 6 3.1596 -2.8617 0.6417 7 6 3.8593 -4.0742 0.0838 8 8 4.7157 -3.9433 -0.7651 9 7 3.5333 -5.3042 0.5280 10 6 2.5194 -5.6400 1.5506 11 6 2.5933 -7.1911 1.7024 12 1 2.2003 -7.6038 2.6315 13 6 4.1252 -7.4084 1.4313 14 6 4.1184 -6.6034 0.0824 15 1 5.0654 -6.5450 -0.4543 16 6 2.9390 -7.3219 -0.6436 17 7 2.0023 -7.7090 0.4331 18 6 0.8299 -8.4026 0.2940 19 1 0.2806 -8.7158 1.1696 20 6 0.3474 -8.7034 -0.9723 21 7 1.0758 -8.4346 -2.0350 22 14 -1.3359 -9.4894 -1.1681 23 1 -2.3492 -8.4334 -1.4196 24 1 -1.3107 -10.4342 -2.3135 25 1 -1.6859 -10.2256 0.0732 26 6 1.7848 -2.5913 0.0036 27 1 -0.3633 -0.5138 0.8901 28 1 -0.3633 1.0276 -0.0005 29 1 -0.3633 -0.5138 -0.8899 30 1 4.2236 -0.9178 0.6548 31 1 4.0350 -1.6531 -0.9966 32 1 3.1498 -2.8406 1.7315 33 1 2.7612 -5.1553 2.4966 34 1 1.5279 -5.3379 1.2139 35 1 4.7514 -6.9400 2.1906 36 1 4.3761 -8.4593 1.2876 37 1 2.4526 -6.6403 -1.3415 38 1 3.3001 -8.2070 -1.1674 39 1 0.7388 -8.6451 -2.9200 40 1 1.6714 -3.0179 -0.9930 41 1 0.9440 -2.8132 0.6608 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032376822.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:00:43 Heat of formation + Delta-G solvation = 6.338137 kcal Electronic energy + Delta-G solvation = -24239.933369 eV Core-core repulsion = 20736.200428 eV Total energy + Delta-G solvation = -3503.732940 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.99491 -41.00680 -39.54722 -38.17030 -35.41537 -33.35466 -32.16338 -30.81702 -30.19821 -29.39648 -27.22878 -26.91721 -25.62131 -24.17759 -21.70308 -21.36344 -20.08144 -19.89611 -18.99840 -18.11367 -18.03935 -17.45815 -16.83771 -16.78527 -16.18684 -15.96598 -15.72667 -15.04130 -14.79049 -14.43061 -14.04719 -13.77026 -13.70750 -13.66034 -13.41220 -13.27625 -13.17627 -13.05935 -12.92867 -12.78116 -12.69071 -12.28236 -12.11663 -12.04222 -11.99380 -11.80560 -11.49291 -11.18943 -10.82906 -10.63464 -9.89697 -9.49672 -8.84768 -7.81811 -5.15888 1.47682 1.50668 1.51250 1.55301 1.60088 1.65906 2.07048 2.52086 3.18254 3.36833 3.41126 3.44794 3.61670 3.82910 3.91399 3.96329 4.04576 4.11827 4.26990 4.29298 4.40396 4.44632 4.52926 4.60111 4.66339 4.71167 4.76690 4.88316 4.97984 5.01392 5.05708 5.08149 5.20134 5.30506 5.50395 5.59826 5.70837 6.14449 6.54815 6.70365 7.00204 7.07386 7.15307 7.75992 8.46666 9.29758 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015989 B = 0.004662 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.737920 B = 6004.475608 C = 7081.058122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.527 3.473 3 O -0.600 6.600 4 N -0.646 5.646 5 C 0.122 3.878 6 C -0.127 4.127 7 C 0.534 3.466 8 O -0.591 6.591 9 N -0.603 5.603 10 C 0.090 3.910 11 C 0.134 3.866 12 H 0.136 0.864 13 C -0.132 4.132 14 C 0.099 3.901 15 H 0.110 0.890 16 C 0.188 3.812 17 N -0.615 5.615 18 C -0.226 4.226 19 H 0.096 0.904 20 C -0.066 4.066 21 N -0.956 5.956 22 Si 0.970 3.030 23 H -0.290 1.290 24 H -0.306 1.306 25 H -0.262 1.262 26 C 0.128 3.872 27 H 0.114 0.886 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.158 0.842 33 H 0.106 0.894 34 H 0.065 0.935 35 H 0.103 0.897 36 H 0.076 0.924 37 H 0.004 0.996 38 H 0.009 0.991 39 H 0.242 0.758 40 H 0.076 0.924 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.033 8.763 11.628 14.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.320 3.680 3 O -0.482 6.482 4 N -0.381 5.381 5 C -0.001 4.001 6 C -0.148 4.148 7 C 0.323 3.677 8 O -0.473 6.473 9 N -0.335 5.335 10 C -0.034 4.034 11 C 0.028 3.972 12 H 0.153 0.847 13 C -0.172 4.172 14 C -0.004 4.004 15 H 0.128 0.872 16 C 0.062 3.938 17 N -0.340 5.340 18 C -0.355 4.355 19 H 0.114 0.886 20 C -0.259 4.259 21 N -0.605 5.605 22 Si 0.800 3.200 23 H -0.218 1.218 24 H -0.234 1.234 25 H -0.186 1.186 26 C 0.005 3.995 27 H 0.133 0.867 28 H 0.115 0.885 29 H 0.119 0.881 30 H 0.112 0.888 31 H 0.097 0.903 32 H 0.175 0.825 33 H 0.124 0.876 34 H 0.083 0.917 35 H 0.121 0.879 36 H 0.095 0.905 37 H 0.023 0.977 38 H 0.027 0.973 39 H 0.052 0.948 40 H 0.094 0.906 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.502 9.552 11.009 14.584 hybrid contribution -0.649 -0.686 -1.334 1.634 sum -0.148 8.866 9.675 13.124 Atomic orbital electron populations 1.21904 0.87610 1.06232 1.06242 1.21338 0.91954 0.80853 0.73830 1.90691 1.72278 1.32128 1.53067 1.50198 1.09042 1.05997 1.72871 1.23008 0.83923 0.91805 1.01402 1.23267 0.96586 0.90923 1.04032 1.20316 0.82386 0.83680 0.81325 1.90676 1.35656 1.86298 1.34632 1.49288 1.38939 1.04724 1.40557 1.23285 0.90814 0.98272 0.91023 1.23598 0.91816 0.90964 0.90862 0.84691 1.24081 0.97810 0.99843 0.95427 1.24144 0.96402 0.82066 0.97797 0.87176 1.21506 0.88078 0.94616 0.89639 1.45473 1.21971 1.63948 1.02602 1.19514 0.96700 1.26630 0.92659 0.88633 1.25581 1.01691 1.03094 0.95539 1.70160 1.37888 1.54965 0.97475 0.85173 0.80237 0.77397 0.77225 1.21758 1.23405 1.18649 1.23211 0.97184 0.77527 1.01562 0.86724 0.88548 0.88111 0.88765 0.90308 0.82469 0.87582 0.91703 0.87872 0.90538 0.97733 0.97318 0.94833 0.90561 0.85510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 10.07 71.24 0.72 -1.73 16 2 C 0.53 13.27 8.17 87.66 0.72 13.99 16 3 O -0.60 -20.65 17.81 -3.02 -0.05 -20.71 16 4 N -0.65 -15.09 3.61 -836.04 -3.02 -18.11 16 5 C 0.12 3.00 8.17 86.49 0.71 3.70 16 6 C -0.13 -2.72 3.61 -10.87 -0.04 -2.76 16 7 C 0.53 16.36 7.43 87.66 0.65 17.01 16 8 O -0.59 -23.09 16.26 -3.05 -0.05 -23.14 16 9 N -0.60 -18.37 2.95 -768.30 -2.26 -20.63 16 10 C 0.09 2.25 6.01 87.16 0.52 2.77 16 11 C 0.13 3.98 5.53 46.93 0.26 4.24 16 12 H 0.14 3.29 8.14 -2.39 -0.02 3.27 16 13 C -0.13 -3.68 6.81 33.46 0.23 -3.45 16 14 C 0.10 3.48 5.24 46.93 0.25 3.73 16 15 H 0.11 3.92 8.06 -2.38 -0.02 3.90 16 16 C 0.19 8.69 4.77 87.16 0.42 9.10 16 17 N -0.62 -26.92 3.02 -648.57 -1.96 -28.88 16 18 C -0.23 -11.13 10.36 84.03 0.87 -10.26 16 19 H 0.10 4.33 7.84 -2.91 -0.02 4.30 16 20 C -0.07 -3.51 5.49 84.86 0.47 -3.05 16 21 N -0.96 -55.69 10.61 21.65 0.23 -55.46 16 22 Si 0.97 42.92 29.56 68.60 2.03 44.95 16 23 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 24 H -0.31 -14.20 7.11 99.48 0.71 -13.49 16 25 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 26 C 0.13 2.59 8.18 86.44 0.71 3.30 16 27 H 0.11 1.17 8.14 -2.38 -0.02 1.15 16 28 H 0.10 1.41 8.12 -2.39 -0.02 1.39 16 29 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.08 2.29 7.43 -2.39 -0.02 2.27 16 32 H 0.16 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.11 1.69 8.14 -2.38 -0.02 1.67 16 34 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.00 0.25 7.53 -2.39 -0.02 0.23 16 38 H 0.01 0.47 7.64 -2.39 -0.02 0.45 16 39 H 0.24 14.05 8.31 -92.71 -0.77 13.28 16 40 H 0.08 1.89 8.09 -2.39 -0.02 1.87 16 41 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -75.83 339.41 2.40 -73.43 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: 1.02 Total: 11.95 kcal Atomic # 6 Polarization: 30.13 SS G_CDS: 6.47 Total: 36.60 kcal Atomic # 7 Polarization: -116.07 SS G_CDS: -7.01 Total: -123.08 kcal Atomic # 8 Polarization: -43.74 SS G_CDS: -0.10 Total: -43.84 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -75.83 2.40 -73.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032376822.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.769 kcal (2) G-P(sol) polarization free energy of solvation -75.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds