Wall clock time and date at job start Tue Mar 31 2020 03:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46761 * 124.34655 * 2 1 4 4 C 1.54483 * 105.47574 * 197.03494 * 3 2 1 5 5 H 1.08998 * 110.99885 * 92.71221 * 4 3 2 6 6 C 1.50696 * 110.97204 * 216.46618 * 4 3 2 7 7 O 1.21277 * 120.00283 * 353.82825 * 6 4 3 8 8 N 1.34776 * 119.99697 * 173.82999 * 6 4 3 9 9 C 1.47872 * 126.94864 * 0.02562 * 8 6 4 10 10 C 1.56011 * 105.10512 * 181.97900 * 9 8 6 11 11 H 1.09003 * 116.24777 * 159.68453 * 10 9 8 12 12 C 1.57087 * 99.61018 * 32.80433 * 10 9 8 13 13 C 1.49293 * 126.94273 * 179.97438 * 8 6 4 14 14 H 1.08994 * 116.15105 * 16.72334 * 13 8 6 15 15 C 1.56000 * 104.29789 * 246.64505 * 13 8 6 16 16 N 1.47865 * 105.11450 * 289.08232 * 15 13 8 17 17 C 1.36943 * 126.94534 * 181.90772 * 16 15 13 18 18 H 1.08002 * 119.99788 * 179.68244 * 17 16 15 19 19 C 1.38811 * 119.99622 * 359.96428 * 17 16 15 20 20 N 1.31614 * 120.00467 * 359.72375 * 19 17 16 21 21 Si 1.86801 * 119.99700 * 179.72266 * 19 17 16 22 22 H 1.48496 * 109.47031 * 59.99836 * 21 19 17 23 23 H 1.48497 * 109.47267 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47169 * 300.00118 * 21 19 17 25 25 C 1.54635 * 101.76012 * 334.58435 * 4 3 2 26 26 C 1.34418 * 124.35187 * 180.02562 * 2 1 3 27 27 O 1.21282 * 124.94252 * 359.53560 * 26 2 1 28 28 H 1.09005 * 109.46604 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46823 * 299.99950 * 1 2 3 30 30 H 1.08998 * 109.46809 * 60.00583 * 1 2 3 31 31 H 1.09001 * 110.24912 * 78.03838 * 3 2 1 32 32 H 1.09005 * 110.25018 * 316.03507 * 3 2 1 33 33 H 1.09001 * 110.31319 * 63.07577 * 9 8 6 34 34 H 1.08994 * 110.40053 * 300.93123 * 9 8 6 35 35 H 1.09008 * 112.36372 * 64.27392 * 12 10 9 36 36 H 1.09000 * 112.37026 * 191.71285 * 12 10 9 37 37 H 1.08999 * 110.40633 * 170.12575 * 15 13 8 38 38 H 1.09002 * 110.21676 * 47.94471 * 15 13 8 39 39 H 0.96995 * 120.00147 * 180.02562 * 20 19 17 40 40 H 1.09002 * 110.48273 * 143.47562 * 25 4 3 41 41 H 1.08997 * 110.48804 * 266.11568 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7009 0.7489 -0.4362 5 1 3.8271 0.8451 -1.5145 6 6 4.7717 1.5124 0.2997 7 8 4.4683 2.4355 1.0253 8 7 6.0666 1.1694 0.1512 9 6 6.6065 0.0785 -0.6885 10 6 8.1471 0.1016 -0.4438 11 1 8.6878 -0.8128 -0.6882 12 6 8.1675 0.5682 1.0561 13 6 7.2459 1.8147 0.8006 14 1 7.0333 2.4475 1.6622 15 6 8.0242 2.4723 -0.3807 16 7 8.6064 1.3420 -1.1355 17 6 9.4094 1.4179 -2.2422 18 1 9.7786 0.5143 -2.7045 19 6 9.7537 2.6563 -2.7662 20 7 9.3039 3.7575 -2.2028 21 14 10.8554 2.7601 -4.2712 22 1 10.2083 2.0569 -5.4077 23 1 11.0711 4.1850 -4.6295 24 1 12.1622 2.1208 -3.9730 25 6 3.6899 -0.7377 -0.0108 26 6 2.2235 -1.1097 -0.0005 27 8 1.7948 -2.2442 0.0071 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 2.3309 1.6428 1.0004 32 1 1.8982 1.9385 -0.7100 33 1 6.3875 0.2663 -1.7396 34 1 6.1888 -0.8800 -0.3809 35 1 7.7056 -0.1597 1.7232 36 1 9.1660 0.8519 1.3888 37 1 8.8140 3.1207 -0.0013 38 1 7.3405 3.0380 -1.0137 39 1 9.5442 4.6228 -2.5692 40 1 4.2325 -1.3457 -0.7347 41 1 4.1198 -0.8531 0.9841 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032432752.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:48 Heat of formation + Delta-G solvation = -1.041038 kcal Electronic energy + Delta-G solvation = -24391.261738 eV Core-core repulsion = 20887.208812 eV Total energy + Delta-G solvation = -3504.052925 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.92446 -39.82497 -38.03363 -36.23835 -33.83774 -33.04292 -31.43736 -29.16263 -28.63476 -27.82145 -26.93310 -25.28880 -24.06087 -22.62893 -20.56729 -19.87187 -19.61714 -18.55396 -17.59524 -16.95899 -16.55856 -16.04465 -15.82750 -15.29261 -15.02126 -14.39084 -13.97895 -13.89614 -13.80556 -13.61861 -13.34049 -12.78055 -12.59806 -12.44360 -12.30207 -11.96417 -11.73160 -11.59196 -11.46158 -11.33892 -11.06067 -10.91711 -10.82911 -10.65612 -10.33052 -10.15013 -10.09859 -9.69324 -9.53457 -8.89745 -8.75854 -8.12035 -6.99104 -5.82271 -3.17097 2.42394 2.75560 2.85618 3.23400 3.34226 3.38835 3.40621 4.11206 4.23904 4.37286 4.60319 4.76754 4.92941 5.07543 5.11130 5.14524 5.16279 5.30320 5.36507 5.44176 5.48715 5.49683 5.55291 5.60837 5.69656 5.79154 5.86269 6.09761 6.20093 6.28051 6.33645 6.40436 6.53046 6.60392 6.88493 7.35923 7.41006 7.65735 7.95556 7.99058 8.04507 8.39940 9.04684 9.65632 10.33954 11.29755 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.024156 B = 0.003968 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.870519 B = 7055.026598 C = 7127.223291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.624 5.624 3 C 0.119 3.881 4 C -0.119 4.119 5 H 0.117 0.883 6 C 0.540 3.460 7 O -0.551 6.551 8 N -0.600 5.600 9 C 0.079 3.921 10 C 0.140 3.860 11 H 0.107 0.893 12 C -0.152 4.152 13 C 0.098 3.902 14 H 0.114 0.886 15 C 0.175 3.825 16 N -0.597 5.597 17 C -0.234 4.234 18 H 0.081 0.919 19 C -0.004 4.004 20 N -0.920 5.920 21 Si 0.913 3.087 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.284 1.284 25 C -0.143 4.143 26 C 0.520 3.480 27 O -0.535 6.535 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.056 0.944 38 H 0.048 0.952 39 H 0.255 0.745 40 H 0.112 0.888 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.388 -6.605 4.970 14.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.359 5.359 3 C -0.004 4.004 4 C -0.141 4.141 5 H 0.135 0.865 6 C 0.327 3.673 7 O -0.430 6.430 8 N -0.333 5.333 9 C -0.046 4.046 10 C 0.031 3.969 11 H 0.125 0.875 12 C -0.191 4.191 13 C -0.004 4.004 14 H 0.132 0.868 15 C 0.050 3.950 16 N -0.322 5.322 17 C -0.362 4.362 18 H 0.098 0.902 19 C -0.201 4.201 20 N -0.566 5.566 21 Si 0.743 3.257 22 H -0.211 1.211 23 H -0.216 1.216 24 H -0.211 1.211 25 C -0.183 4.183 26 C 0.308 3.692 27 O -0.413 6.413 28 H 0.101 0.899 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.103 0.897 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.130 0.870 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.834 -6.466 5.170 14.442 hybrid contribution 0.534 0.316 -1.012 1.187 sum -11.300 -6.150 4.158 13.520 Atomic orbital electron populations 1.21563 0.77927 1.03651 1.01677 1.48215 1.06680 1.07507 1.73486 1.21986 0.87986 0.86582 1.03869 1.22180 0.94248 0.95012 1.02642 0.86496 1.19488 0.82024 0.83910 0.81856 1.90679 1.81464 1.30545 1.40326 1.49156 1.04704 1.33851 1.45565 1.23432 0.97992 0.88249 0.94971 1.23184 0.90355 0.92512 0.90807 0.87498 1.24177 0.99866 0.97248 0.97842 1.24380 0.82961 0.95595 0.97458 0.86775 1.21907 0.94897 0.89224 0.89004 1.45240 1.57082 0.99248 1.30591 1.19005 1.22179 0.92786 1.02220 0.90167 1.24812 1.00520 0.95340 0.99433 1.69895 1.48165 0.96909 1.41622 0.86196 0.80368 0.76723 0.82414 1.21138 1.21611 1.21083 1.22367 0.95014 0.95546 1.05380 1.20843 0.89127 0.84318 0.74879 1.90716 1.78616 1.21061 1.50859 0.89943 0.91944 0.91933 0.89015 0.89674 0.90898 0.92412 0.91589 0.89707 0.92575 0.93418 0.93490 0.86970 0.87350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.81 11.14 59.85 0.67 1.48 16 2 N -0.62 -7.04 3.33 -180.28 -0.60 -7.65 16 3 C 0.12 1.32 6.66 -3.12 -0.02 1.29 16 4 C -0.12 -1.45 3.08 -90.14 -0.28 -1.72 16 5 H 0.12 1.33 8.14 -51.93 -0.42 0.91 16 6 C 0.54 8.60 7.17 -10.99 -0.08 8.53 16 7 O -0.55 -10.36 15.92 5.56 0.09 -10.27 16 8 N -0.60 -9.90 2.95 -156.78 -0.46 -10.37 16 9 C 0.08 1.20 5.58 -1.68 -0.01 1.19 16 10 C 0.14 2.41 5.52 -62.57 -0.35 2.07 16 11 H 0.11 1.65 8.14 -51.93 -0.42 1.23 16 12 C -0.15 -2.38 6.81 -22.28 -0.15 -2.53 16 13 C 0.10 1.76 5.24 -62.54 -0.33 1.44 16 14 H 0.11 2.00 8.06 -51.93 -0.42 1.58 16 15 C 0.17 3.97 4.77 -1.69 -0.01 3.97 16 16 N -0.60 -13.64 3.02 -156.37 -0.47 -14.11 16 17 C -0.23 -6.00 10.37 -15.06 -0.16 -6.15 16 18 H 0.08 1.96 7.83 -52.49 -0.41 1.54 16 19 C 0.00 -0.11 5.49 -17.43 -0.10 -0.21 16 20 N -0.92 -25.98 10.56 55.49 0.59 -25.40 16 21 Si 0.91 21.13 29.55 -169.99 -5.02 16.10 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 C -0.14 -1.62 5.02 -26.74 -0.13 -1.75 16 26 C 0.52 6.88 8.02 -10.86 -0.09 6.79 16 27 O -0.54 -8.81 17.35 5.56 0.10 -8.72 16 28 H 0.08 0.77 7.53 -51.93 -0.39 0.38 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.09 1.12 7.06 -51.93 -0.37 0.75 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.06 0.70 6.36 -51.93 -0.33 0.37 16 35 H 0.07 0.89 8.14 -51.92 -0.42 0.46 16 36 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.06 1.42 7.47 -51.93 -0.39 1.04 16 38 H 0.05 1.25 7.67 -51.93 -0.40 0.86 16 39 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.11 1.15 7.23 -51.93 -0.38 0.77 16 41 H 0.11 1.22 7.89 -51.93 -0.41 0.81 16 LS Contribution 329.44 15.07 4.96 4.96 Total: -1.00 -32.21 329.44 -7.86 -40.06 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -6.01 Total: 0.99 kcal Atomic # 6 Polarization: 15.41 SS G_CDS: -1.03 Total: 14.38 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: -0.95 Total: -57.52 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: 0.18 Total: -18.99 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.21 -7.86 -40.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032432752.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.022 kcal (2) G-P(sol) polarization free energy of solvation -32.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds