Wall clock time and date at job start Tue Mar 31 2020 03:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46761 * 124.34655 * 2 1 4 4 C 1.54483 * 105.47574 * 197.03494 * 3 2 1 5 5 H 1.08998 * 110.99885 * 92.71221 * 4 3 2 6 6 C 1.50696 * 110.97204 * 216.46618 * 4 3 2 7 7 O 1.21277 * 120.00283 * 353.82825 * 6 4 3 8 8 N 1.34776 * 119.99697 * 173.82999 * 6 4 3 9 9 C 1.47872 * 126.94864 * 0.02562 * 8 6 4 10 10 C 1.56011 * 105.10512 * 181.97900 * 9 8 6 11 11 H 1.09003 * 116.24777 * 159.68453 * 10 9 8 12 12 C 1.57087 * 99.61018 * 32.80433 * 10 9 8 13 13 C 1.49293 * 126.94273 * 179.97438 * 8 6 4 14 14 H 1.08994 * 116.15105 * 16.72334 * 13 8 6 15 15 C 1.56000 * 104.29789 * 246.64505 * 13 8 6 16 16 N 1.47865 * 105.11450 * 289.08232 * 15 13 8 17 17 C 1.36943 * 126.94534 * 181.90772 * 16 15 13 18 18 H 1.08002 * 119.99788 * 179.68244 * 17 16 15 19 19 C 1.38811 * 119.99622 * 359.96428 * 17 16 15 20 20 N 1.31614 * 120.00467 * 359.72375 * 19 17 16 21 21 Si 1.86801 * 119.99700 * 179.72266 * 19 17 16 22 22 H 1.48496 * 109.47031 * 59.99836 * 21 19 17 23 23 H 1.48497 * 109.47267 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47169 * 300.00118 * 21 19 17 25 25 C 1.54635 * 101.76012 * 334.58435 * 4 3 2 26 26 C 1.34418 * 124.35187 * 180.02562 * 2 1 3 27 27 O 1.21282 * 124.94252 * 359.53560 * 26 2 1 28 28 H 1.09005 * 109.46604 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46823 * 299.99950 * 1 2 3 30 30 H 1.08998 * 109.46809 * 60.00583 * 1 2 3 31 31 H 1.09001 * 110.24912 * 78.03838 * 3 2 1 32 32 H 1.09005 * 110.25018 * 316.03507 * 3 2 1 33 33 H 1.09001 * 110.31319 * 63.07577 * 9 8 6 34 34 H 1.08994 * 110.40053 * 300.93123 * 9 8 6 35 35 H 1.09008 * 112.36372 * 64.27392 * 12 10 9 36 36 H 1.09000 * 112.37026 * 191.71285 * 12 10 9 37 37 H 1.08999 * 110.40633 * 170.12575 * 15 13 8 38 38 H 1.09002 * 110.21676 * 47.94471 * 15 13 8 39 39 H 0.96995 * 120.00147 * 180.02562 * 20 19 17 40 40 H 1.09002 * 110.48273 * 143.47562 * 25 4 3 41 41 H 1.08997 * 110.48804 * 266.11568 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2931 1.2117 0.0000 4 6 3.7009 0.7489 -0.4362 5 1 3.8271 0.8451 -1.5145 6 6 4.7717 1.5124 0.2997 7 8 4.4683 2.4355 1.0253 8 7 6.0666 1.1694 0.1512 9 6 6.6065 0.0785 -0.6885 10 6 8.1471 0.1016 -0.4438 11 1 8.6878 -0.8128 -0.6882 12 6 8.1675 0.5682 1.0561 13 6 7.2459 1.8147 0.8006 14 1 7.0333 2.4475 1.6622 15 6 8.0242 2.4723 -0.3807 16 7 8.6064 1.3420 -1.1355 17 6 9.4094 1.4179 -2.2422 18 1 9.7786 0.5143 -2.7045 19 6 9.7537 2.6563 -2.7662 20 7 9.3039 3.7575 -2.2028 21 14 10.8554 2.7601 -4.2712 22 1 10.2083 2.0569 -5.4077 23 1 11.0711 4.1850 -4.6295 24 1 12.1622 2.1208 -3.9730 25 6 3.6899 -0.7377 -0.0108 26 6 2.2235 -1.1097 -0.0005 27 8 1.7948 -2.2442 0.0071 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 2.3309 1.6428 1.0004 32 1 1.8982 1.9385 -0.7100 33 1 6.3875 0.2663 -1.7396 34 1 6.1888 -0.8800 -0.3809 35 1 7.7056 -0.1597 1.7232 36 1 9.1660 0.8519 1.3888 37 1 8.8140 3.1207 -0.0013 38 1 7.3405 3.0380 -1.0137 39 1 9.5442 4.6228 -2.5692 40 1 4.2325 -1.3457 -0.7347 41 1 4.1198 -0.8531 0.9841 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032432752.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:47 Heat of formation + Delta-G solvation = -22.582338 kcal Electronic energy + Delta-G solvation = -24392.195838 eV Core-core repulsion = 20887.208812 eV Total energy + Delta-G solvation = -3504.987026 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.05370 -41.08664 -39.37465 -37.31750 -35.48361 -34.18588 -32.97004 -30.69924 -30.21231 -28.79102 -27.78348 -26.94513 -25.49674 -23.91654 -21.87786 -21.35356 -20.63668 -19.95815 -18.95274 -18.20276 -17.78210 -17.38264 -17.14044 -16.52092 -16.21009 -15.97814 -15.53733 -15.09885 -14.78795 -14.77829 -14.55593 -14.04717 -13.82620 -13.51153 -13.36228 -13.29235 -13.17640 -13.04805 -12.87160 -12.66085 -12.46503 -12.38529 -12.27946 -12.12387 -12.05833 -11.82970 -11.49562 -11.21375 -10.84688 -10.64429 -9.79627 -9.52069 -8.87452 -7.82198 -5.17240 1.43417 1.49299 1.51073 1.56120 1.57363 1.82367 2.09699 2.50839 3.10449 3.28953 3.36091 3.41889 3.61565 3.79473 3.83787 3.93345 4.07132 4.12783 4.25450 4.35909 4.42635 4.52579 4.63287 4.65655 4.69263 4.76322 4.84555 4.85045 4.91645 4.99980 5.06359 5.17886 5.28852 5.43058 5.48254 5.56758 5.69288 5.96904 6.13268 6.66515 7.02360 7.06315 7.11785 7.74297 8.44269 9.28581 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.024156 B = 0.003968 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.870519 B = 7055.026598 C = 7127.223291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.621 5.621 3 C 0.123 3.877 4 C -0.110 4.110 5 H 0.129 0.871 6 C 0.538 3.462 7 O -0.583 6.583 8 N -0.604 5.604 9 C 0.088 3.912 10 C 0.132 3.868 11 H 0.133 0.867 12 C -0.131 4.131 13 C 0.103 3.897 14 H 0.116 0.884 15 C 0.187 3.813 16 N -0.618 5.618 17 C -0.230 4.230 18 H 0.094 0.906 19 C -0.068 4.068 20 N -0.956 5.956 21 Si 0.974 3.026 22 H -0.277 1.277 23 H -0.304 1.304 24 H -0.276 1.276 25 C -0.134 4.134 26 C 0.515 3.485 27 O -0.573 6.573 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.058 0.942 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.078 0.922 37 H 0.016 0.984 38 H 0.000 1.000 39 H 0.243 0.757 40 H 0.129 0.871 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.118 -8.941 5.059 15.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.354 5.354 3 C 0.000 4.000 4 C -0.132 4.132 5 H 0.147 0.853 6 C 0.327 3.673 7 O -0.464 6.464 8 N -0.336 5.336 9 C -0.036 4.036 10 C 0.026 3.974 11 H 0.151 0.849 12 C -0.170 4.170 13 C 0.000 4.000 14 H 0.134 0.866 15 C 0.061 3.939 16 N -0.342 5.342 17 C -0.359 4.359 18 H 0.112 0.888 19 C -0.261 4.261 20 N -0.605 5.605 21 Si 0.803 3.197 22 H -0.203 1.203 23 H -0.231 1.231 24 H -0.202 1.202 25 C -0.174 4.174 26 C 0.304 3.696 27 O -0.453 6.453 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.101 0.899 31 H 0.100 0.900 32 H 0.121 0.879 33 H 0.076 0.924 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.096 0.904 37 H 0.034 0.966 38 H 0.018 0.982 39 H 0.052 0.948 40 H 0.147 0.853 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -12.585 -8.849 5.265 16.261 hybrid contribution 0.715 1.049 -0.999 1.616 sum -11.871 -7.800 4.266 14.831 Atomic orbital electron populations 1.21769 0.76452 1.03670 1.03476 1.48352 1.07726 1.07021 1.72307 1.21960 0.87522 0.86687 1.03835 1.22107 0.93285 0.95152 1.02610 0.85327 1.20090 0.82292 0.83547 0.81353 1.90668 1.81951 1.32031 1.41756 1.49212 1.04639 1.34032 1.45682 1.23324 0.96454 0.89680 0.94157 1.23619 0.91598 0.91258 0.90951 0.84918 1.24076 0.99191 0.96292 0.97420 1.24151 0.83886 0.96505 0.95490 0.86597 1.21511 0.93248 0.89197 0.89936 1.45491 1.56825 1.01511 1.30388 1.19486 1.20980 0.92975 1.02442 0.88793 1.25597 1.02701 0.95373 1.02443 1.70135 1.50242 0.96929 1.43231 0.85213 0.79070 0.75783 0.79626 1.20290 1.23063 1.20178 1.22358 0.94169 0.94683 1.06218 1.21098 0.89982 0.84074 0.74445 1.90700 1.79307 1.22454 1.52888 0.90786 0.90380 0.89941 0.89960 0.87937 0.92370 0.87774 0.87763 0.90383 0.96616 0.98221 0.94761 0.85278 0.86712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.32 11.14 127.77 1.42 2.74 16 2 N -0.62 -12.56 3.33 -842.87 -2.81 -15.37 16 3 C 0.12 2.44 6.66 86.83 0.58 3.02 16 4 C -0.11 -2.39 3.08 -10.48 -0.03 -2.42 16 5 H 0.13 2.57 8.14 -2.39 -0.02 2.55 16 6 C 0.54 16.26 7.17 87.66 0.63 16.88 16 7 O -0.58 -21.51 15.92 -3.02 -0.05 -21.55 16 8 N -0.60 -18.80 2.95 -768.33 -2.27 -21.07 16 9 C 0.09 2.40 5.58 87.16 0.49 2.88 16 10 C 0.13 4.17 5.52 46.93 0.26 4.43 16 11 H 0.13 3.53 8.14 -2.39 -0.02 3.51 16 12 C -0.13 -3.73 6.81 33.48 0.23 -3.51 16 13 C 0.10 3.63 5.24 46.93 0.25 3.87 16 14 H 0.12 4.04 8.06 -2.39 -0.02 4.02 16 15 C 0.19 8.82 4.77 87.16 0.42 9.24 16 16 N -0.62 -28.07 3.02 -648.64 -1.96 -30.02 16 17 C -0.23 -11.74 10.37 84.03 0.87 -10.87 16 18 H 0.09 4.43 7.83 -2.91 -0.02 4.40 16 19 C -0.07 -3.73 5.49 84.86 0.47 -3.26 16 20 N -0.96 -56.61 10.56 21.65 0.23 -56.38 16 21 Si 0.97 44.08 29.55 68.60 2.03 46.11 16 22 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 23 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 24 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 25 C -0.13 -2.61 5.02 30.59 0.15 -2.45 16 26 C 0.52 12.44 8.02 87.90 0.71 13.15 16 27 O -0.57 -17.97 17.35 -3.04 -0.05 -18.02 16 28 H 0.07 1.27 7.53 -2.38 -0.02 1.26 16 29 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.08 1.86 7.06 -2.39 -0.02 1.84 16 32 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 33 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.10 1.95 6.36 -2.39 -0.02 1.94 16 35 H 0.10 2.28 8.14 -2.38 -0.02 2.26 16 36 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.02 0.85 7.47 -2.39 -0.02 0.83 16 38 H 0.00 -0.02 7.67 -2.39 -0.02 -0.04 16 39 H 0.24 14.30 8.31 -92.71 -0.77 13.53 16 40 H 0.13 2.09 7.23 -2.39 -0.02 2.07 16 41 H 0.11 2.15 7.89 -2.39 -0.02 2.13 16 Total: -1.00 -73.34 329.44 2.58 -70.76 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: 1.03 Total: 11.85 kcal Atomic # 6 Polarization: 27.27 SS G_CDS: 6.43 Total: 33.70 kcal Atomic # 7 Polarization: -116.03 SS G_CDS: -6.81 Total: -122.84 kcal Atomic # 8 Polarization: -39.48 SS G_CDS: -0.10 Total: -39.58 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -73.34 2.58 -70.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032432752.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.180 kcal (2) G-P(sol) polarization free energy of solvation -73.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds