Wall clock time and date at job start Tue Mar 31 2020 03:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.46770 * 124.34944 * 2 1 4 4 C 1.54478 * 105.47433 * 197.03706 * 3 2 1 5 5 H 1.08999 * 111.00133 * 216.45227 * 4 3 2 6 6 C 1.50697 * 110.96687 * 92.70642 * 4 3 2 7 7 O 1.21284 * 120.00065 * 6.16329 * 6 4 3 8 8 N 1.34784 * 120.00239 * 186.16827 * 6 4 3 9 9 C 1.47872 * 126.93870 * 359.97438 * 8 6 4 10 10 C 1.55484 * 105.16586 * 181.92604 * 9 8 6 11 11 H 1.08998 * 116.03433 * 159.75661 * 10 9 8 12 12 C 1.57424 * 99.68853 * 32.85680 * 10 9 8 13 13 C 1.49286 * 126.94711 * 179.97438 * 8 6 4 14 14 H 1.08996 * 116.15010 * 15.84138 * 13 8 6 15 15 C 1.56014 * 104.09225 * 246.69547 * 13 8 6 16 16 N 1.47864 * 105.10594 * 288.76852 * 15 13 8 17 17 C 1.36945 * 126.94596 * 181.97954 * 16 15 13 18 18 H 1.07997 * 119.99756 * 180.02562 * 17 16 15 19 19 C 1.38805 * 119.99878 * 0.02562 * 17 16 15 20 20 N 1.31624 * 120.00257 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47187 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47141 * 300.00154 * 21 19 17 24 24 H 1.48498 * 109.47018 * 60.00200 * 21 19 17 25 25 C 1.54621 * 101.76644 * 334.58554 * 4 3 2 26 26 C 1.34418 * 124.35165 * 180.02562 * 2 1 3 27 27 O 1.21277 * 124.94390 * 359.53779 * 26 2 1 28 28 H 1.09009 * 109.47240 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47513 * 299.99570 * 1 2 3 30 30 H 1.09000 * 109.47393 * 59.99840 * 1 2 3 31 31 H 1.08999 * 110.24296 * 78.04178 * 3 2 1 32 32 H 1.08995 * 110.24607 * 316.04357 * 3 2 1 33 33 H 1.08997 * 110.31437 * 300.91106 * 9 8 6 34 34 H 1.08997 * 110.31786 * 62.99612 * 9 8 6 35 35 H 1.08998 * 112.53923 * 191.70860 * 12 10 9 36 36 H 1.09006 * 112.31601 * 64.17667 * 12 10 9 37 37 H 1.09002 * 110.31832 * 169.85717 * 15 13 8 38 38 H 1.09000 * 110.31541 * 47.67388 * 15 13 8 39 39 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 40 40 H 1.09005 * 110.48783 * 143.47051 * 25 4 3 41 41 H 1.09001 * 110.49400 * 265.98572 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2930 1.2118 0.0000 4 6 3.7008 0.7489 -0.4362 5 1 4.4757 1.3009 0.0955 6 6 3.8743 0.8821 -1.9272 7 8 3.0099 1.4111 -2.5935 8 7 4.9901 0.4132 -2.5204 9 6 6.1338 -0.2535 -1.8615 10 6 7.1519 -0.5364 -3.0021 11 1 8.1830 -0.7057 -2.6918 12 6 6.8714 0.7094 -3.9227 13 6 5.3211 0.4621 -3.9753 14 1 4.7276 1.1476 -4.5802 15 6 5.3110 -1.0340 -4.4176 16 7 6.5181 -1.6259 -3.8020 17 6 6.9618 -2.9148 -3.9342 18 1 7.8640 -3.2295 -3.4309 19 6 6.2520 -3.8165 -4.7150 20 7 5.1527 -3.4327 -5.3289 21 14 6.8576 -5.5743 -4.8959 22 1 5.9290 -6.3299 -5.7745 23 1 8.2156 -5.5707 -5.4968 24 1 6.9094 -6.2200 -3.5597 25 6 3.6898 -0.7377 -0.0110 26 6 2.2234 -1.1097 -0.0005 27 8 1.7946 -2.2442 0.0070 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 2.3309 1.6427 1.0005 32 1 1.8981 1.9385 -0.7098 33 1 6.5757 0.4047 -1.1135 34 1 5.8130 -1.1876 -1.4005 35 1 7.3394 0.6184 -4.9028 36 1 7.1251 1.6504 -3.4343 37 1 5.3650 -1.1080 -5.5037 38 1 4.4147 -1.5320 -4.0477 39 1 4.6569 -4.0628 -5.8748 40 1 4.2323 -1.3456 -0.7350 41 1 4.1218 -0.8535 0.9830 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032432753.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:51 Heat of formation + Delta-G solvation = 2.657797 kcal Electronic energy + Delta-G solvation = -24901.747291 eV Core-core repulsion = 21397.854759 eV Total energy + Delta-G solvation = -3503.892532 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.88750 -39.68156 -37.89941 -36.00990 -33.79571 -32.93513 -31.36442 -29.13979 -28.59200 -27.69940 -26.72707 -25.27687 -24.05611 -22.57512 -20.48268 -19.86733 -19.47610 -18.54857 -17.60389 -16.72851 -16.45498 -16.03643 -15.55213 -15.42358 -14.72899 -14.50951 -13.96377 -13.67494 -13.49363 -13.45324 -13.27910 -12.67797 -12.39640 -12.26223 -12.11522 -12.06525 -11.78142 -11.61714 -11.40637 -11.28076 -11.01487 -10.87668 -10.77395 -10.62949 -10.28209 -10.09920 -9.72967 -9.64691 -9.51544 -8.72044 -8.69172 -8.08590 -6.94950 -5.77068 -3.12365 2.67810 2.86408 3.05422 3.25414 3.38933 3.43108 3.45626 4.26863 4.36036 4.42046 4.55621 4.83384 5.01203 5.15073 5.21010 5.27911 5.29555 5.32981 5.47078 5.53548 5.55203 5.57330 5.69053 5.71265 5.72501 5.79493 5.86111 6.16560 6.22862 6.35312 6.43302 6.50325 6.55026 6.63372 7.11841 7.39905 7.45525 7.70599 7.99426 8.09203 8.25040 8.45129 9.09161 9.70585 10.38278 11.34917 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016648 B = 0.005573 C = 0.004701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.480581 B = 5022.638092 C = 5955.112653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.622 5.622 3 C 0.119 3.881 4 C -0.120 4.120 5 H 0.121 0.879 6 C 0.534 3.466 7 O -0.550 6.550 8 N -0.602 5.602 9 C 0.078 3.922 10 C 0.140 3.860 11 H 0.107 0.893 12 C -0.149 4.149 13 C 0.097 3.903 14 H 0.114 0.886 15 C 0.174 3.826 16 N -0.596 5.596 17 C -0.236 4.236 18 H 0.081 0.919 19 C -0.003 4.003 20 N -0.918 5.918 21 Si 0.913 3.087 22 H -0.290 1.290 23 H -0.284 1.284 24 H -0.284 1.284 25 C -0.152 4.152 26 C 0.519 3.481 27 O -0.529 6.529 28 H 0.081 0.919 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.065 0.935 37 H 0.056 0.944 38 H 0.047 0.953 39 H 0.255 0.745 40 H 0.118 0.882 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.864 12.403 11.416 16.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.357 5.357 3 C -0.005 4.005 4 C -0.142 4.142 5 H 0.139 0.861 6 C 0.321 3.679 7 O -0.429 6.429 8 N -0.335 5.335 9 C -0.048 4.048 10 C 0.031 3.969 11 H 0.125 0.875 12 C -0.189 4.189 13 C -0.005 4.005 14 H 0.131 0.869 15 C 0.048 3.952 16 N -0.321 5.321 17 C -0.364 4.364 18 H 0.098 0.902 19 C -0.200 4.200 20 N -0.564 5.564 21 Si 0.743 3.257 22 H -0.216 1.216 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.192 4.192 26 C 0.307 3.693 27 O -0.405 6.405 28 H 0.099 0.901 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.115 0.885 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.136 0.864 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.808 11.834 10.962 16.232 hybrid contribution 0.197 -0.940 -0.071 0.964 sum -1.610 10.894 10.891 15.488 Atomic orbital electron populations 1.21522 0.78087 1.03632 1.01353 1.48067 1.06566 1.07218 1.73820 1.21969 0.88768 0.88002 1.01742 1.22235 0.99253 0.97885 0.94795 0.86082 1.19705 0.80925 0.78334 0.88890 1.90663 1.41206 1.45468 1.65527 1.49179 1.17896 1.56753 1.09664 1.23381 0.87984 0.96339 0.97060 1.23143 0.95124 0.88492 0.90116 0.87502 1.24197 0.95344 0.97998 1.01349 1.24375 0.94682 1.00661 0.80781 0.86858 1.21930 0.90151 0.85597 0.97481 1.45228 1.25671 1.06683 1.54477 1.18978 1.07059 0.84428 1.25896 0.90157 1.24823 0.97224 0.98417 0.99579 1.69898 1.17213 1.34327 1.34992 0.86197 0.77659 0.84232 0.77632 1.21610 1.21093 1.21069 1.22505 0.95668 0.95637 1.05428 1.20824 0.89144 0.84413 0.74952 1.90731 1.78508 1.21057 1.50174 0.90051 0.92257 0.91925 0.90507 0.88506 0.92536 0.90626 0.89709 0.91654 0.92574 0.93534 0.93458 0.86445 0.86888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.11 11.14 59.84 0.67 1.78 16 2 N -0.62 -8.63 3.33 -180.29 -0.60 -9.23 16 3 C 0.12 1.33 6.73 -3.12 -0.02 1.31 16 4 C -0.12 -1.46 3.08 -90.15 -0.28 -1.73 16 5 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 6 C 0.53 8.95 7.26 -10.98 -0.08 8.87 16 7 O -0.55 -10.92 15.85 5.55 0.09 -10.83 16 8 N -0.60 -10.35 2.89 -157.13 -0.45 -10.81 16 9 C 0.08 1.20 5.40 -1.97 -0.01 1.19 16 10 C 0.14 2.45 5.51 -62.65 -0.35 2.11 16 11 H 0.11 1.66 8.14 -51.93 -0.42 1.24 16 12 C -0.15 -2.39 6.83 -22.11 -0.15 -2.54 16 13 C 0.10 1.82 5.24 -62.56 -0.33 1.49 16 14 H 0.11 2.08 8.05 -51.93 -0.42 1.66 16 15 C 0.17 4.12 4.76 -1.68 -0.01 4.11 16 16 N -0.60 -14.00 3.02 -156.46 -0.47 -14.47 16 17 C -0.24 -6.21 10.37 -15.06 -0.16 -6.36 16 18 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 19 C 0.00 -0.09 5.49 -17.43 -0.10 -0.19 16 20 N -0.92 -27.02 10.56 55.49 0.59 -26.44 16 21 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 C -0.15 -2.08 5.93 -26.74 -0.16 -2.24 16 26 C 0.52 8.75 8.02 -10.86 -0.09 8.66 16 27 O -0.53 -11.15 17.35 5.56 0.10 -11.05 16 28 H 0.08 1.04 7.53 -51.92 -0.39 0.65 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.10 1.18 6.94 -51.93 -0.36 0.82 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 1.30 6.00 -51.93 -0.31 0.99 16 35 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 1.48 7.46 -51.93 -0.39 1.09 16 38 H 0.05 1.30 7.68 -51.93 -0.40 0.90 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.12 1.94 5.34 -51.93 -0.28 1.67 16 41 H 0.11 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 328.06 15.07 4.94 4.94 Total: -1.00 -34.87 328.06 -7.78 -42.65 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -5.89 Total: 1.88 kcal Atomic # 6 Polarization: 17.52 SS G_CDS: -1.05 Total: 16.47 kcal Atomic # 7 Polarization: -60.01 SS G_CDS: -0.94 Total: -60.95 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: 0.18 Total: -21.88 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.87 -7.78 -42.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032432753.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.310 kcal (2) G-P(sol) polarization free energy of solvation -34.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds