Wall clock time and date at job start Tue Mar 31 2020 03:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.46770 * 124.34944 * 2 1 4 4 C 1.54478 * 105.47433 * 197.03706 * 3 2 1 5 5 H 1.08999 * 111.00133 * 216.45227 * 4 3 2 6 6 C 1.50697 * 110.96687 * 92.70642 * 4 3 2 7 7 O 1.21284 * 120.00065 * 6.16329 * 6 4 3 8 8 N 1.34784 * 120.00239 * 186.16827 * 6 4 3 9 9 C 1.47872 * 126.93870 * 359.97438 * 8 6 4 10 10 C 1.55484 * 105.16586 * 181.92604 * 9 8 6 11 11 H 1.08998 * 116.03433 * 159.75661 * 10 9 8 12 12 C 1.57424 * 99.68853 * 32.85680 * 10 9 8 13 13 C 1.49286 * 126.94711 * 179.97438 * 8 6 4 14 14 H 1.08996 * 116.15010 * 15.84138 * 13 8 6 15 15 C 1.56014 * 104.09225 * 246.69547 * 13 8 6 16 16 N 1.47864 * 105.10594 * 288.76852 * 15 13 8 17 17 C 1.36945 * 126.94596 * 181.97954 * 16 15 13 18 18 H 1.07997 * 119.99756 * 180.02562 * 17 16 15 19 19 C 1.38805 * 119.99878 * 0.02562 * 17 16 15 20 20 N 1.31624 * 120.00257 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47187 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47141 * 300.00154 * 21 19 17 24 24 H 1.48498 * 109.47018 * 60.00200 * 21 19 17 25 25 C 1.54621 * 101.76644 * 334.58554 * 4 3 2 26 26 C 1.34418 * 124.35165 * 180.02562 * 2 1 3 27 27 O 1.21277 * 124.94390 * 359.53779 * 26 2 1 28 28 H 1.09009 * 109.47240 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47513 * 299.99570 * 1 2 3 30 30 H 1.09000 * 109.47393 * 59.99840 * 1 2 3 31 31 H 1.08999 * 110.24296 * 78.04178 * 3 2 1 32 32 H 1.08995 * 110.24607 * 316.04357 * 3 2 1 33 33 H 1.08997 * 110.31437 * 300.91106 * 9 8 6 34 34 H 1.08997 * 110.31786 * 62.99612 * 9 8 6 35 35 H 1.08998 * 112.53923 * 191.70860 * 12 10 9 36 36 H 1.09006 * 112.31601 * 64.17667 * 12 10 9 37 37 H 1.09002 * 110.31832 * 169.85717 * 15 13 8 38 38 H 1.09000 * 110.31541 * 47.67388 * 15 13 8 39 39 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 40 40 H 1.09005 * 110.48783 * 143.47051 * 25 4 3 41 41 H 1.09001 * 110.49400 * 265.98572 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2930 1.2118 0.0000 4 6 3.7008 0.7489 -0.4362 5 1 4.4757 1.3009 0.0955 6 6 3.8743 0.8821 -1.9272 7 8 3.0099 1.4111 -2.5935 8 7 4.9901 0.4132 -2.5204 9 6 6.1338 -0.2535 -1.8615 10 6 7.1519 -0.5364 -3.0021 11 1 8.1830 -0.7057 -2.6918 12 6 6.8714 0.7094 -3.9227 13 6 5.3211 0.4621 -3.9753 14 1 4.7276 1.1476 -4.5802 15 6 5.3110 -1.0340 -4.4176 16 7 6.5181 -1.6259 -3.8020 17 6 6.9618 -2.9148 -3.9342 18 1 7.8640 -3.2295 -3.4309 19 6 6.2520 -3.8165 -4.7150 20 7 5.1527 -3.4327 -5.3289 21 14 6.8576 -5.5743 -4.8959 22 1 5.9290 -6.3299 -5.7745 23 1 8.2156 -5.5707 -5.4968 24 1 6.9094 -6.2200 -3.5597 25 6 3.6898 -0.7377 -0.0110 26 6 2.2234 -1.1097 -0.0005 27 8 1.7946 -2.2442 0.0070 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 2.3309 1.6427 1.0005 32 1 1.8981 1.9385 -0.7098 33 1 6.5757 0.4047 -1.1135 34 1 5.8130 -1.1876 -1.4005 35 1 7.3394 0.6184 -4.9028 36 1 7.1251 1.6504 -3.4343 37 1 5.3650 -1.1080 -5.5037 38 1 4.4147 -1.5320 -4.0477 39 1 4.6569 -4.0628 -5.8748 40 1 4.2323 -1.3456 -0.7350 41 1 4.1218 -0.8535 0.9830 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032432753.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:08:50 Heat of formation + Delta-G solvation = -22.899264 kcal Electronic energy + Delta-G solvation = -24902.855528 eV Core-core repulsion = 21397.854759 eV Total energy + Delta-G solvation = -3505.000769 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.12268 -41.05189 -39.31910 -37.29516 -35.50841 -34.20688 -32.96351 -30.72291 -30.23117 -28.77268 -27.75870 -26.97127 -25.56904 -23.94529 -21.85149 -21.38156 -20.68326 -20.01059 -19.03069 -18.15905 -17.75830 -17.46058 -16.95560 -16.76583 -16.13809 -16.00527 -15.65521 -14.97117 -14.91733 -14.62816 -14.59830 -13.89648 -13.71416 -13.53455 -13.37080 -13.30565 -13.21914 -13.08906 -12.82357 -12.75548 -12.66036 -12.44116 -12.24864 -12.14190 -12.07794 -11.82619 -11.50702 -11.03978 -10.90568 -10.67391 -9.77418 -9.51739 -8.90915 -7.85563 -5.20821 1.42905 1.44391 1.47902 1.53497 1.57824 1.96284 2.08002 2.47927 3.22928 3.31448 3.33927 3.37980 3.52702 3.77390 3.89810 3.94828 4.02695 4.23065 4.30262 4.33076 4.44102 4.57726 4.60680 4.65325 4.71028 4.78009 4.79163 4.86196 4.91202 5.01839 5.06260 5.17885 5.30228 5.45491 5.48503 5.52595 5.64710 6.01126 6.09782 6.68748 7.01978 7.03723 7.14296 7.71672 8.41287 9.25425 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.016648 B = 0.005573 C = 0.004701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.480581 B = 5022.638092 C = 5955.112653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.622 5.622 3 C 0.117 3.883 4 C -0.105 4.105 5 H 0.179 0.821 6 C 0.523 3.477 7 O -0.589 6.589 8 N -0.606 5.606 9 C 0.084 3.916 10 C 0.132 3.868 11 H 0.138 0.862 12 C -0.124 4.124 13 C 0.100 3.900 14 H 0.111 0.889 15 C 0.187 3.813 16 N -0.617 5.617 17 C -0.227 4.227 18 H 0.099 0.901 19 C -0.074 4.074 20 N -0.960 5.960 21 Si 0.974 3.026 22 H -0.306 1.306 23 H -0.269 1.269 24 H -0.278 1.278 25 C -0.143 4.143 26 C 0.498 3.502 27 O -0.591 6.591 28 H 0.059 0.941 29 H 0.098 0.902 30 H 0.064 0.936 31 H 0.130 0.870 32 H 0.088 0.912 33 H 0.118 0.882 34 H 0.057 0.943 35 H 0.076 0.924 36 H 0.110 0.890 37 H 0.013 0.987 38 H -0.013 1.013 39 H 0.241 0.759 40 H 0.084 0.916 41 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.630 15.222 14.761 21.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.355 5.355 3 C -0.005 4.005 4 C -0.126 4.126 5 H 0.196 0.804 6 C 0.313 3.687 7 O -0.471 6.471 8 N -0.338 5.338 9 C -0.039 4.039 10 C 0.026 3.974 11 H 0.155 0.845 12 C -0.163 4.163 13 C -0.004 4.004 14 H 0.129 0.871 15 C 0.061 3.939 16 N -0.342 5.342 17 C -0.356 4.356 18 H 0.116 0.884 19 C -0.267 4.267 20 N -0.609 5.609 21 Si 0.803 3.197 22 H -0.233 1.233 23 H -0.195 1.195 24 H -0.204 1.204 25 C -0.183 4.183 26 C 0.287 3.713 27 O -0.472 6.472 28 H 0.078 0.922 29 H 0.116 0.884 30 H 0.083 0.917 31 H 0.147 0.853 32 H 0.106 0.894 33 H 0.136 0.864 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.128 0.872 37 H 0.031 0.969 38 H 0.005 0.995 39 H 0.050 0.950 40 H 0.103 0.897 41 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 0.742 14.734 14.360 20.588 hybrid contribution -0.610 -1.739 -1.111 2.152 sum 0.132 12.995 13.249 18.559 Atomic orbital electron populations 1.21684 0.77276 1.02908 1.03326 1.48339 1.07567 1.07589 1.71992 1.22291 0.87402 0.86413 1.04372 1.22378 1.01676 0.97283 0.91241 0.80394 1.20674 0.79783 0.77220 0.91046 1.90648 1.42207 1.47207 1.67028 1.49267 1.18941 1.56879 1.08725 1.23326 0.86638 0.97010 0.96951 1.23637 0.96795 0.86640 0.90353 0.84460 1.24084 0.91969 0.99167 1.01115 1.24134 0.97466 0.96475 0.82286 0.87110 1.21491 0.88476 0.89077 0.94892 1.45494 1.25918 1.07329 1.55420 1.19516 1.06610 0.85701 1.23735 0.88378 1.25668 0.97887 1.02399 1.00713 1.70167 1.19089 1.34862 1.36827 0.85204 0.77257 0.79866 0.77375 1.23349 1.19479 1.20376 1.22489 0.93005 0.95946 1.06883 1.21548 0.91094 0.84218 0.74468 1.90687 1.79777 1.23463 1.53254 0.92196 0.88381 0.91740 0.85258 0.89393 0.86432 0.92481 0.90520 0.87203 0.96900 0.99486 0.94971 0.89724 0.82549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.00 11.14 127.77 1.42 3.42 16 2 N -0.62 -16.32 3.33 -842.90 -2.81 -19.13 16 3 C 0.12 2.15 6.73 86.83 0.58 2.73 16 4 C -0.10 -2.09 3.08 -10.49 -0.03 -2.12 16 5 H 0.18 1.61 8.14 -2.39 -0.02 1.59 16 6 C 0.52 16.48 7.26 87.65 0.64 17.12 16 7 O -0.59 -23.15 15.85 -3.04 -0.05 -23.20 16 8 N -0.61 -19.66 2.89 -769.41 -2.22 -21.88 16 9 C 0.08 2.30 5.40 86.97 0.47 2.77 16 10 C 0.13 4.20 5.51 46.87 0.26 4.45 16 11 H 0.14 3.57 8.14 -2.39 -0.02 3.55 16 12 C -0.12 -3.58 6.83 33.59 0.23 -3.35 16 13 C 0.10 3.72 5.24 46.93 0.25 3.96 16 14 H 0.11 4.15 8.05 -2.39 -0.02 4.13 16 15 C 0.19 9.40 4.76 87.16 0.42 9.82 16 16 N -0.62 -29.20 3.02 -648.91 -1.96 -31.16 16 17 C -0.23 -12.03 10.37 84.03 0.87 -11.16 16 18 H 0.10 4.74 7.83 -2.91 -0.02 4.72 16 19 C -0.07 -4.27 5.49 84.86 0.47 -3.81 16 20 N -0.96 -60.53 10.56 21.65 0.23 -60.30 16 21 Si 0.97 46.47 29.55 68.60 2.03 48.50 16 22 H -0.31 -15.28 7.11 99.48 0.71 -14.57 16 23 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 24 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 25 C -0.14 -3.55 5.93 30.59 0.18 -3.37 16 26 C 0.50 16.69 8.02 87.90 0.71 17.39 16 27 O -0.59 -26.12 17.35 -3.02 -0.05 -26.17 16 28 H 0.06 1.59 7.53 -2.38 -0.02 1.58 16 29 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 30 H 0.06 1.40 8.14 -2.39 -0.02 1.39 16 31 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.09 1.87 6.94 -2.39 -0.02 1.85 16 33 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.06 1.83 6.00 -2.39 -0.01 1.82 16 35 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.11 2.31 8.14 -2.38 -0.02 2.29 16 37 H 0.01 0.74 7.46 -2.39 -0.02 0.72 16 38 H -0.01 -0.80 7.68 -2.39 -0.02 -0.82 16 39 H 0.24 15.15 8.31 -92.71 -0.77 14.38 16 40 H 0.08 2.75 5.34 -2.38 -0.01 2.74 16 41 H 0.16 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -86.92 328.06 2.65 -84.27 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: 1.04 Total: 11.22 kcal Atomic # 6 Polarization: 31.40 SS G_CDS: 6.45 Total: 37.86 kcal Atomic # 7 Polarization: -125.71 SS G_CDS: -6.76 Total: -132.47 kcal Atomic # 8 Polarization: -49.27 SS G_CDS: -0.10 Total: -49.37 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Total: -86.92 2.65 -84.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032432753.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.371 kcal (2) G-P(sol) polarization free energy of solvation -86.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds