Wall clock time and date at job start Tue Mar 31 2020 03:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34421 * 124.35344 * 2 1 4 4 O 1.21279 * 124.94189 * 359.57126 * 3 2 1 5 5 C 1.51291 * 110.11439 * 179.43377 * 3 2 1 6 6 C 1.54631 * 104.25504 * 344.15016 * 5 3 2 7 7 C 1.46768 * 124.34697 * 180.30093 * 2 1 3 8 8 H 1.08996 * 110.24801 * 78.01735 * 7 2 1 9 9 C 1.50696 * 110.24567 * 316.01523 * 7 2 1 10 10 O 1.21280 * 120.00090 * 341.45594 * 9 7 2 11 11 N 1.34783 * 119.99920 * 161.45355 * 9 7 2 12 12 C 1.47864 * 126.94490 * 359.68914 * 11 9 7 13 13 C 1.55997 * 105.11387 * 181.87588 * 12 11 9 14 14 H 1.09000 * 116.16488 * 159.89732 * 13 12 11 15 15 C 1.57079 * 99.47484 * 33.16379 * 13 12 11 16 16 C 1.49288 * 126.94360 * 180.02562 * 11 9 7 17 17 H 1.09004 * 116.15271 * 15.84728 * 16 11 9 18 18 C 1.56013 * 104.09081 * 246.69916 * 16 11 9 19 19 N 1.47865 * 105.10667 * 288.76520 * 18 16 11 20 20 C 1.36935 * 126.94853 * 182.02556 * 19 18 16 21 21 H 1.07998 * 120.00355 * 173.65310 * 20 19 18 22 22 C 1.38823 * 119.99786 * 353.64446 * 20 19 18 23 23 N 1.31615 * 119.99608 * 6.40065 * 22 20 19 24 24 Si 1.86800 * 119.99986 * 186.39900 * 22 20 19 25 25 H 1.48500 * 109.46890 * 94.98895 * 24 22 20 26 26 H 1.48493 * 109.47028 * 214.98472 * 24 22 20 27 27 H 1.48497 * 109.47069 * 334.98653 * 24 22 20 28 28 H 1.09000 * 109.47195 * 269.70012 * 1 2 3 29 29 H 1.09005 * 109.46338 * 29.69877 * 1 2 3 30 30 H 1.08997 * 109.46915 * 149.70007 * 1 2 3 31 31 H 1.08996 * 110.64105 * 225.35321 * 5 3 2 32 32 H 1.08999 * 110.37867 * 102.81119 * 5 3 2 33 33 H 1.08997 * 110.96398 * 266.45600 * 6 5 3 34 34 H 1.08995 * 110.96433 * 142.69945 * 6 5 3 35 35 H 1.09001 * 110.31414 * 300.90914 * 12 11 9 36 36 H 1.09003 * 110.31636 * 63.09382 * 12 11 9 37 37 H 1.08997 * 112.36441 * 191.51281 * 15 13 12 38 38 H 1.08995 * 112.36834 * 64.07509 * 15 13 12 39 39 H 1.08992 * 110.31800 * 47.67879 * 18 16 11 40 40 H 1.09006 * 110.31362 * 169.85895 * 18 16 11 41 41 H 0.97003 * 119.99882 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2235 1.1097 0.0000 4 8 1.7948 2.2442 -0.0074 5 6 3.6899 0.7377 0.0140 6 6 3.7010 -0.7511 0.4318 7 6 2.2931 -1.2118 -0.0064 8 1 2.3306 -1.6377 -1.0089 9 6 1.7474 -2.2214 0.9702 10 8 0.9875 -1.8679 1.8469 11 7 2.1037 -3.5174 0.8694 12 6 3.0083 -4.1147 -0.1363 13 6 3.0241 -5.6409 0.1864 14 1 3.3478 -6.2993 -0.6197 15 6 1.5509 -5.8110 0.7043 16 6 1.6595 -4.6409 1.7463 17 1 0.7869 -4.4473 2.3702 18 6 2.9585 -5.0767 2.4926 19 7 3.7892 -5.7401 1.4648 20 6 5.0125 -6.3274 1.6484 21 1 5.4775 -6.8710 0.8394 22 6 5.6552 -6.2237 2.8746 23 7 5.0370 -5.6714 3.8969 24 14 7.3972 -6.8679 3.0735 25 1 8.3618 -5.7567 2.8735 26 1 7.5646 -7.4291 4.4380 27 1 7.6501 -7.9301 2.0670 28 1 -0.3633 -0.0054 1.0276 29 1 -0.3632 0.8928 -0.5092 30 1 -0.3633 -0.8873 -0.5185 31 1 4.2327 1.3420 0.7408 32 1 4.1216 0.8583 -0.9795 33 1 3.8268 -0.8528 1.5097 34 1 4.4753 -1.3006 -0.1034 35 1 2.6231 -3.9425 -1.1413 36 1 4.0110 -3.6987 -0.0380 37 1 1.3880 -6.7774 1.1812 38 1 0.8126 -5.6081 -0.0713 39 1 3.4759 -4.2048 2.8924 40 1 2.7182 -5.7755 3.2939 41 1 5.4858 -5.5993 4.7538 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032568143.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:57 Heat of formation + Delta-G solvation = 1.061314 kcal Electronic energy + Delta-G solvation = -24731.041762 eV Core-core repulsion = 21227.080001 eV Total energy + Delta-G solvation = -3503.961761 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.92175 -39.78879 -37.93554 -36.03594 -33.78692 -32.84349 -31.66378 -29.44680 -28.71762 -27.83002 -26.64199 -25.30099 -23.76309 -22.49694 -20.90022 -19.99012 -19.45303 -18.55011 -17.73741 -16.86649 -16.49256 -15.92784 -15.84540 -15.32001 -14.73920 -14.37611 -14.00976 -13.94556 -13.71573 -13.35414 -13.26648 -12.67286 -12.62450 -12.26367 -12.17950 -11.95543 -11.86183 -11.74732 -11.43911 -11.20233 -11.09594 -10.96837 -10.86104 -10.71155 -10.34784 -10.15041 -9.93238 -9.75130 -9.69140 -8.81172 -8.63093 -8.14559 -7.01423 -5.86408 -3.20595 2.49726 2.71832 2.88792 3.31425 3.32741 3.36883 3.39952 4.21822 4.32651 4.34741 4.57516 4.82009 4.88987 5.02779 5.08436 5.17758 5.26105 5.28040 5.47169 5.51472 5.55730 5.57822 5.66212 5.72862 5.79480 5.87493 5.90102 6.05551 6.16800 6.29536 6.32831 6.38009 6.49159 6.56398 7.02023 7.30787 7.41423 7.63515 7.91519 8.01128 8.10030 8.39775 9.01251 9.62550 10.31300 11.25989 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.021079 B = 0.004694 C = 0.004213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.014367 B = 5963.684466 C = 6644.686462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.600 5.600 3 C 0.520 3.480 4 O -0.536 6.536 5 C -0.152 4.152 6 C -0.119 4.119 7 C 0.118 3.882 8 H 0.100 0.900 9 C 0.521 3.479 10 O -0.542 6.542 11 N -0.601 5.601 12 C 0.079 3.921 13 C 0.142 3.858 14 H 0.107 0.893 15 C -0.151 4.151 16 C 0.098 3.902 17 H 0.114 0.886 18 C 0.173 3.827 19 N -0.596 5.596 20 C -0.235 4.235 21 H 0.081 0.919 22 C -0.002 4.002 23 N -0.917 5.917 24 Si 0.911 3.089 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.280 1.280 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.055 0.945 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.922 4.832 -10.805 12.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.334 5.334 3 C 0.308 3.692 4 O -0.414 6.414 5 C -0.192 4.192 6 C -0.157 4.157 7 C 0.010 3.990 8 H 0.118 0.882 9 C 0.308 3.692 10 O -0.420 6.420 11 N -0.335 5.335 12 C -0.046 4.046 13 C 0.033 3.967 14 H 0.125 0.875 15 C -0.190 4.190 16 C -0.004 4.004 17 H 0.131 0.869 18 C 0.048 3.952 19 N -0.320 5.320 20 C -0.363 4.363 21 H 0.099 0.901 22 C -0.199 4.199 23 N -0.563 5.563 24 Si 0.741 3.259 25 H -0.216 1.216 26 H -0.218 1.218 27 H -0.205 1.205 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.109 0.891 34 H 0.120 0.880 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.464 5.668 -10.110 12.814 hybrid contribution 0.977 -0.448 0.241 1.102 sum -4.487 5.221 -9.870 12.033 Atomic orbital electron populations 1.21531 0.77524 1.02023 1.02864 1.47864 1.06752 1.05929 1.72826 1.20845 0.89321 0.84090 0.74960 1.90705 1.78840 1.20861 1.50956 1.22358 0.94646 0.97308 1.04918 1.22567 0.94148 0.94995 1.03968 1.21622 0.91868 0.85967 0.99508 0.88220 1.20068 0.81672 0.81811 0.85696 1.90690 1.36781 1.78684 1.35836 1.49211 1.46063 1.05962 1.32223 1.23391 0.93448 0.98096 0.89702 1.23170 0.90644 0.91619 0.91307 0.87481 1.24149 0.97957 0.98513 0.98418 1.24367 0.99614 0.83392 0.93022 0.86860 1.21940 0.86315 0.96776 0.90135 1.45238 1.18524 1.66095 1.02174 1.19043 0.92240 1.27308 0.97732 0.90098 1.24838 0.98508 1.00663 0.95928 1.69924 1.36257 1.48913 1.01160 0.86131 0.84399 0.78198 0.77193 1.21565 1.21750 1.20543 0.91413 0.91032 0.91586 0.87589 0.87513 0.89114 0.87999 0.92687 0.90725 0.89705 0.91632 0.93082 0.93000 0.93504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.33 9.61 59.85 0.58 1.90 16 2 N -0.60 -8.38 3.00 -174.02 -0.52 -8.91 16 3 C 0.52 7.59 8.02 -10.86 -0.09 7.51 16 4 O -0.54 -9.61 17.59 5.56 0.10 -9.51 16 5 C -0.15 -1.64 6.86 -26.74 -0.18 -1.82 16 6 C -0.12 -1.38 6.68 -25.10 -0.17 -1.54 16 7 C 0.12 1.52 3.16 -68.16 -0.22 1.30 16 8 H 0.10 1.04 7.63 -51.93 -0.40 0.65 16 9 C 0.52 8.57 6.75 -10.98 -0.07 8.49 16 10 O -0.54 -10.71 15.41 5.56 0.09 -10.63 16 11 N -0.60 -9.83 2.95 -156.82 -0.46 -10.30 16 12 C 0.08 1.15 5.81 -1.69 -0.01 1.14 16 13 C 0.14 2.35 5.52 -62.55 -0.35 2.00 16 14 H 0.11 1.58 8.14 -51.93 -0.42 1.16 16 15 C -0.15 -2.31 6.80 -22.32 -0.15 -2.46 16 16 C 0.10 1.75 5.24 -62.57 -0.33 1.42 16 17 H 0.11 2.00 8.05 -51.93 -0.42 1.58 16 18 C 0.17 3.89 4.77 -1.68 -0.01 3.88 16 19 N -0.60 -13.27 3.03 -156.34 -0.47 -13.75 16 20 C -0.24 -5.90 10.36 -15.06 -0.16 -6.05 16 21 H 0.08 1.93 7.84 -52.49 -0.41 1.52 16 22 C 0.00 -0.06 5.49 -17.43 -0.10 -0.15 16 23 N -0.92 -25.63 10.61 55.49 0.59 -25.04 16 24 Si 0.91 20.78 29.56 -169.99 -5.02 15.76 16 25 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 28 H 0.07 0.99 7.51 -51.93 -0.39 0.60 16 29 H 0.07 0.86 7.92 -51.93 -0.41 0.45 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.09 1.25 7.90 -51.93 -0.41 0.84 16 34 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.05 0.62 7.97 -51.93 -0.41 0.21 16 36 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.05 1.33 7.53 -51.93 -0.39 0.94 16 40 H 0.05 1.30 7.64 -51.93 -0.40 0.91 16 41 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 331.97 15.07 5.00 5.00 Total: -1.00 -32.42 331.97 -8.11 -40.53 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -6.16 Total: 1.21 kcal Atomic # 6 Polarization: 16.88 SS G_CDS: -1.25 Total: 15.63 kcal Atomic # 7 Polarization: -57.12 SS G_CDS: -0.87 Total: -57.99 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: 0.18 Total: -20.14 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.42 -8.11 -40.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032568143.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.593 kcal (2) G-P(sol) polarization free energy of solvation -32.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds