Wall clock time and date at job start Tue Mar 31 2020 03:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34421 * 124.35344 * 2 1 4 4 O 1.21279 * 124.94189 * 359.57126 * 3 2 1 5 5 C 1.51291 * 110.11439 * 179.43377 * 3 2 1 6 6 C 1.54631 * 104.25504 * 344.15016 * 5 3 2 7 7 C 1.46768 * 124.34697 * 180.30093 * 2 1 3 8 8 H 1.08996 * 110.24801 * 78.01735 * 7 2 1 9 9 C 1.50696 * 110.24567 * 316.01523 * 7 2 1 10 10 O 1.21280 * 120.00090 * 341.45594 * 9 7 2 11 11 N 1.34783 * 119.99920 * 161.45355 * 9 7 2 12 12 C 1.47864 * 126.94490 * 359.68914 * 11 9 7 13 13 C 1.55997 * 105.11387 * 181.87588 * 12 11 9 14 14 H 1.09000 * 116.16488 * 159.89732 * 13 12 11 15 15 C 1.57079 * 99.47484 * 33.16379 * 13 12 11 16 16 C 1.49288 * 126.94360 * 180.02562 * 11 9 7 17 17 H 1.09004 * 116.15271 * 15.84728 * 16 11 9 18 18 C 1.56013 * 104.09081 * 246.69916 * 16 11 9 19 19 N 1.47865 * 105.10667 * 288.76520 * 18 16 11 20 20 C 1.36935 * 126.94853 * 182.02556 * 19 18 16 21 21 H 1.07998 * 120.00355 * 173.65310 * 20 19 18 22 22 C 1.38823 * 119.99786 * 353.64446 * 20 19 18 23 23 N 1.31615 * 119.99608 * 6.40065 * 22 20 19 24 24 Si 1.86800 * 119.99986 * 186.39900 * 22 20 19 25 25 H 1.48500 * 109.46890 * 94.98895 * 24 22 20 26 26 H 1.48493 * 109.47028 * 214.98472 * 24 22 20 27 27 H 1.48497 * 109.47069 * 334.98653 * 24 22 20 28 28 H 1.09000 * 109.47195 * 269.70012 * 1 2 3 29 29 H 1.09005 * 109.46338 * 29.69877 * 1 2 3 30 30 H 1.08997 * 109.46915 * 149.70007 * 1 2 3 31 31 H 1.08996 * 110.64105 * 225.35321 * 5 3 2 32 32 H 1.08999 * 110.37867 * 102.81119 * 5 3 2 33 33 H 1.08997 * 110.96398 * 266.45600 * 6 5 3 34 34 H 1.08995 * 110.96433 * 142.69945 * 6 5 3 35 35 H 1.09001 * 110.31414 * 300.90914 * 12 11 9 36 36 H 1.09003 * 110.31636 * 63.09382 * 12 11 9 37 37 H 1.08997 * 112.36441 * 191.51281 * 15 13 12 38 38 H 1.08995 * 112.36834 * 64.07509 * 15 13 12 39 39 H 1.08992 * 110.31800 * 47.67879 * 18 16 11 40 40 H 1.09006 * 110.31362 * 169.85895 * 18 16 11 41 41 H 0.97003 * 119.99882 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2235 1.1097 0.0000 4 8 1.7948 2.2442 -0.0074 5 6 3.6899 0.7377 0.0140 6 6 3.7010 -0.7511 0.4318 7 6 2.2931 -1.2118 -0.0064 8 1 2.3306 -1.6377 -1.0089 9 6 1.7474 -2.2214 0.9702 10 8 0.9875 -1.8679 1.8469 11 7 2.1037 -3.5174 0.8694 12 6 3.0083 -4.1147 -0.1363 13 6 3.0241 -5.6409 0.1864 14 1 3.3478 -6.2993 -0.6197 15 6 1.5509 -5.8110 0.7043 16 6 1.6595 -4.6409 1.7463 17 1 0.7869 -4.4473 2.3702 18 6 2.9585 -5.0767 2.4926 19 7 3.7892 -5.7401 1.4648 20 6 5.0125 -6.3274 1.6484 21 1 5.4775 -6.8710 0.8394 22 6 5.6552 -6.2237 2.8746 23 7 5.0370 -5.6714 3.8969 24 14 7.3972 -6.8679 3.0735 25 1 8.3618 -5.7567 2.8735 26 1 7.5646 -7.4291 4.4380 27 1 7.6501 -7.9301 2.0670 28 1 -0.3633 -0.0054 1.0276 29 1 -0.3632 0.8928 -0.5092 30 1 -0.3633 -0.8873 -0.5185 31 1 4.2327 1.3420 0.7408 32 1 4.1216 0.8583 -0.9795 33 1 3.8268 -0.8528 1.5097 34 1 4.4753 -1.3006 -0.1034 35 1 2.6231 -3.9425 -1.1413 36 1 4.0110 -3.6987 -0.0380 37 1 1.3880 -6.7774 1.1812 38 1 0.8126 -5.6081 -0.0713 39 1 3.4759 -4.2048 2.8924 40 1 2.7182 -5.7755 3.2939 41 1 5.4858 -5.5993 4.7538 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032568143.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:09:56 Heat of formation + Delta-G solvation = -20.925873 kcal Electronic energy + Delta-G solvation = -24731.995198 eV Core-core repulsion = 21227.080001 eV Total energy + Delta-G solvation = -3504.915197 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.10405 -41.09444 -39.29874 -37.24562 -35.46188 -33.93109 -33.20916 -30.96630 -30.22850 -28.99833 -27.66392 -26.93278 -25.27750 -23.63267 -22.23886 -21.41005 -20.65887 -19.92716 -19.06076 -18.28647 -17.73145 -17.33170 -17.06452 -16.68170 -16.22507 -15.80616 -15.54594 -15.03779 -14.88561 -14.78118 -14.49159 -13.83499 -13.71619 -13.68639 -13.38219 -13.31664 -13.12845 -13.10006 -12.86283 -12.77945 -12.69743 -12.28890 -12.15248 -12.10347 -11.99986 -11.82177 -11.50073 -11.14695 -10.94763 -10.69738 -9.80725 -9.52088 -8.86060 -7.82857 -5.16997 1.37573 1.49061 1.50389 1.50759 1.59650 1.75012 2.15878 2.51465 3.20604 3.29189 3.36637 3.45181 3.58285 3.82564 3.91172 3.93691 3.95946 4.07362 4.24472 4.29730 4.33748 4.55521 4.66430 4.71767 4.77965 4.82666 4.84985 4.90722 4.97121 4.99942 5.06100 5.19258 5.28653 5.31085 5.48780 5.57359 5.69500 5.96227 6.13284 6.63873 6.98105 7.06139 7.12402 7.75062 8.45441 9.28801 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.021079 B = 0.004694 C = 0.004213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1328.014367 B = 5963.684466 C = 6644.686462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.605 5.605 3 C 0.509 3.491 4 O -0.578 6.578 5 C -0.139 4.139 6 C -0.115 4.115 7 C 0.124 3.876 8 H 0.142 0.858 9 C 0.516 3.484 10 O -0.584 6.584 11 N -0.601 5.601 12 C 0.085 3.915 13 C 0.135 3.865 14 H 0.137 0.863 15 C -0.129 4.129 16 C 0.101 3.899 17 H 0.108 0.892 18 C 0.187 3.813 19 N -0.615 5.615 20 C -0.226 4.226 21 H 0.097 0.903 22 C -0.067 4.067 23 N -0.956 5.956 24 Si 0.971 3.029 25 H -0.291 1.291 26 H -0.307 1.307 27 H -0.261 1.261 28 H 0.042 0.958 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.111 0.889 32 H 0.144 0.856 33 H 0.059 0.941 34 H 0.131 0.869 35 H 0.110 0.890 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.104 0.896 39 H 0.002 0.998 40 H 0.008 0.992 41 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.439 4.256 -14.838 16.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.337 5.337 3 C 0.299 3.701 4 O -0.458 6.458 5 C -0.178 4.178 6 C -0.153 4.153 7 C 0.017 3.983 8 H 0.160 0.840 9 C 0.304 3.696 10 O -0.465 6.465 11 N -0.334 5.334 12 C -0.039 4.039 13 C 0.029 3.971 14 H 0.155 0.845 15 C -0.169 4.169 16 C -0.003 4.003 17 H 0.126 0.874 18 C 0.061 3.939 19 N -0.340 5.340 20 C -0.355 4.355 21 H 0.115 0.885 22 C -0.260 4.260 23 N -0.606 5.606 24 Si 0.800 3.200 25 H -0.218 1.218 26 H -0.234 1.234 27 H -0.185 1.185 28 H 0.061 0.939 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.129 0.871 32 H 0.161 0.839 33 H 0.078 0.922 34 H 0.149 0.851 35 H 0.128 0.872 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.123 0.877 39 H 0.020 0.980 40 H 0.026 0.974 41 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -4.981 5.055 -14.225 15.897 hybrid contribution 0.762 -0.311 1.498 1.709 sum -4.219 4.744 -12.727 14.223 Atomic orbital electron populations 1.21534 0.77472 1.03289 1.01681 1.48064 1.07180 1.06357 1.72137 1.21536 0.91008 0.83563 0.74017 1.90680 1.79853 1.22414 1.52887 1.22391 0.91984 0.96347 1.07124 1.22596 0.94219 0.96013 1.02467 1.21806 0.91690 0.84531 1.00226 0.84025 1.20771 0.80947 0.82098 0.85736 1.90681 1.38785 1.79293 1.37754 1.49257 1.46206 1.05785 1.32150 1.23374 0.93182 0.95824 0.91507 1.23616 0.90123 0.93713 0.89639 0.84506 1.24052 0.98146 0.96707 0.97956 1.24135 0.96834 0.85577 0.93706 0.87368 1.21516 0.88347 0.93906 0.90173 1.45486 1.18266 1.65622 1.04603 1.19531 0.92879 1.25579 0.97490 0.88490 1.25604 1.01950 1.02280 0.96179 1.70164 1.37469 1.51680 1.01266 0.85161 0.80453 0.77839 0.76527 1.21817 1.23432 1.18509 0.93877 0.90451 0.89589 0.87086 0.83865 0.92241 0.85064 0.87177 0.91511 0.90488 0.87722 0.97961 0.97363 0.94867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.54 9.61 127.77 1.23 3.77 16 2 N -0.60 -15.79 3.00 -823.07 -2.47 -18.26 16 3 C 0.51 14.10 8.02 87.90 0.71 14.80 16 4 O -0.58 -20.46 17.59 -3.03 -0.05 -20.51 16 5 C -0.14 -2.59 6.86 30.59 0.21 -2.38 16 6 C -0.11 -2.36 6.68 31.65 0.21 -2.14 16 7 C 0.12 2.81 3.16 44.70 0.14 2.95 16 8 H 0.14 2.10 7.63 -2.39 -0.02 2.08 16 9 C 0.52 16.17 6.75 87.65 0.59 16.76 16 10 O -0.58 -23.32 15.41 -3.03 -0.05 -23.37 16 11 N -0.60 -18.34 2.95 -768.44 -2.26 -20.60 16 12 C 0.08 2.09 5.81 87.16 0.51 2.59 16 13 C 0.14 3.97 5.52 46.92 0.26 4.23 16 14 H 0.14 3.27 8.14 -2.39 -0.02 3.25 16 15 C -0.13 -3.54 6.80 33.45 0.23 -3.32 16 16 C 0.10 3.54 5.24 46.92 0.25 3.79 16 17 H 0.11 3.89 8.05 -2.39 -0.02 3.87 16 18 C 0.19 8.71 4.77 87.16 0.42 9.12 16 19 N -0.62 -26.94 3.03 -648.55 -1.96 -28.90 16 20 C -0.23 -11.14 10.36 84.04 0.87 -10.27 16 21 H 0.10 4.38 7.84 -2.91 -0.02 4.36 16 22 C -0.07 -3.60 5.49 84.87 0.47 -3.13 16 23 N -0.96 -56.27 10.61 21.65 0.23 -56.04 16 24 Si 0.97 43.22 29.56 68.60 2.03 45.24 16 25 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 26 H -0.31 -14.30 7.11 99.48 0.71 -13.59 16 27 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 28 H 0.04 1.28 7.51 -2.39 -0.02 1.26 16 29 H 0.08 1.81 7.92 -2.38 -0.02 1.79 16 30 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.14 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.06 1.61 7.90 -2.39 -0.02 1.59 16 34 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.11 1.65 7.97 -2.39 -0.02 1.63 16 36 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 39 H 0.00 0.12 7.53 -2.39 -0.02 0.10 16 40 H 0.01 0.44 7.64 -2.38 -0.02 0.43 16 41 H 0.24 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -76.66 331.97 2.56 -74.10 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: 1.02 Total: 11.57 kcal Atomic # 6 Polarization: 30.70 SS G_CDS: 6.08 Total: 36.77 kcal Atomic # 7 Polarization: -117.33 SS G_CDS: -6.47 Total: -123.80 kcal Atomic # 8 Polarization: -43.78 SS G_CDS: -0.10 Total: -43.88 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Total: -76.66 2.56 -74.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032568143.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.172 kcal (2) G-P(sol) polarization free energy of solvation -76.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds