Wall clock time and date at job start Tue Mar 31 2020 03:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46766 * 124.35131 * 2 1 4 4 C 1.54482 * 105.47330 * 196.99336 * 3 2 1 5 5 C 1.54627 * 101.76480 * 334.57826 * 4 3 2 6 6 H 1.08999 * 110.59698 * 143.53014 * 5 4 3 7 7 C 1.50700 * 110.48976 * 266.12456 * 5 4 3 8 8 O 1.21282 * 120.00120 * 89.41213 * 7 5 4 9 9 N 1.34776 * 119.99583 * 269.41826 * 7 5 4 10 10 C 1.49769 * 127.90456 * 354.09104 * 9 7 5 11 11 C 1.56020 * 105.31867 * 182.13371 * 10 9 7 12 12 H 1.08998 * 116.89153 * 159.53750 * 11 10 9 13 13 C 1.57078 * 99.60722 * 33.13273 * 11 10 9 14 14 C 1.49291 * 126.94161 * 174.86598 * 9 7 5 15 15 H 1.09001 * 116.15641 * 15.84068 * 14 9 7 16 16 C 1.56018 * 104.09206 * 246.69335 * 14 9 7 17 17 N 1.47876 * 105.10551 * 287.92353 * 16 14 9 18 18 C 1.36939 * 126.94130 * 181.97798 * 17 16 14 19 19 H 1.08000 * 119.99244 * 180.02562 * 18 17 16 20 20 C 1.38808 * 120.00070 * 0.02592 * 18 17 16 21 21 N 1.31619 * 120.00582 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99838 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47045 * 89.99837 * 22 20 18 24 24 H 1.48498 * 109.47434 * 209.99856 * 22 20 18 25 25 H 1.48503 * 109.46937 * 330.00013 * 22 20 18 26 26 C 1.34412 * 124.35002 * 179.97438 * 2 1 3 27 27 O 1.21288 * 124.94307 * 359.65165 * 26 2 1 28 28 H 1.08996 * 109.47011 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47176 * 300.00815 * 1 2 3 30 30 H 1.09004 * 109.46531 * 60.00363 * 1 2 3 31 31 H 1.09001 * 110.24194 * 315.98772 * 3 2 1 32 32 H 1.08999 * 110.25114 * 77.90249 * 3 2 1 33 33 H 1.08999 * 110.96806 * 216.46301 * 4 3 2 34 34 H 1.08994 * 110.96945 * 92.70019 * 4 3 2 35 35 H 1.08997 * 109.93081 * 63.29678 * 10 9 7 36 36 H 1.09000 * 110.48425 * 301.25205 * 10 9 7 37 37 H 1.08998 * 112.37351 * 64.27410 * 13 11 10 38 38 H 1.09004 * 112.37084 * 191.71203 * 13 11 10 39 39 H 1.09004 * 110.31790 * 169.01313 * 16 14 9 40 40 H 1.09006 * 110.39953 * 46.87332 * 16 14 9 41 41 H 0.96994 * 120.00112 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2932 1.2117 0.0000 4 6 3.7012 0.7485 -0.4351 5 6 3.6899 -0.7378 -0.0091 6 1 4.2333 -1.3477 -0.7307 7 6 4.2834 -0.8967 1.3670 8 8 3.5723 -0.8208 2.3466 9 7 5.6044 -1.1230 1.5091 10 6 6.6168 -1.3682 0.4330 11 6 7.9621 -1.6190 1.1823 12 1 8.7421 -2.1455 0.6322 13 6 7.4151 -2.3268 2.4734 14 6 6.3693 -1.1979 2.7889 15 1 5.7776 -1.3225 3.6958 16 6 7.3086 0.0471 2.7435 17 7 8.3309 -0.2784 1.7258 18 6 9.3995 0.4941 1.3564 19 1 10.0808 0.1444 0.5948 20 6 9.6071 1.7263 1.9607 21 7 8.7766 2.1526 2.8886 22 14 11.0654 2.7797 1.4573 23 1 10.6681 3.6734 0.3399 24 1 11.5066 3.5997 2.6140 25 1 12.1807 1.9033 1.0176 26 6 2.2235 -1.1097 0.0005 27 8 1.7946 -2.2442 0.0070 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 1.8988 1.9381 -0.7106 32 1 2.3291 1.6441 0.9999 33 1 4.4754 1.3010 0.0973 34 1 3.8274 0.8443 -1.5135 35 1 6.6983 -0.4901 -0.2076 36 1 6.3429 -2.2434 -0.1562 37 1 6.9398 -3.2826 2.2529 38 1 8.1745 -2.4176 3.2501 39 1 7.7778 0.2028 3.7149 40 1 6.7491 0.9346 2.4475 41 1 8.9215 3.0138 3.3106 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032577052.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:07 Heat of formation + Delta-G solvation = 1.269974 kcal Electronic energy + Delta-G solvation = -24667.410026 eV Core-core repulsion = 21163.457314 eV Total energy + Delta-G solvation = -3503.952712 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.91303 -39.62479 -37.61929 -36.33098 -33.68097 -32.95414 -31.42032 -29.18972 -28.62336 -27.78361 -26.76964 -25.24650 -23.76797 -22.48173 -20.90393 -19.90296 -19.42145 -18.50151 -17.63123 -16.77860 -16.48233 -16.10118 -15.46804 -15.30005 -14.83171 -14.42899 -13.99613 -13.79642 -13.66455 -13.34181 -13.09124 -12.81853 -12.64076 -12.30136 -12.21674 -11.93889 -11.74916 -11.57340 -11.43838 -11.32117 -11.04690 -10.88526 -10.81187 -10.63504 -10.30804 -10.11596 -9.87918 -9.68208 -9.49094 -8.78135 -8.74504 -8.07995 -6.98347 -5.81970 -3.16633 2.45112 2.85307 2.95801 3.33253 3.38756 3.40855 3.41304 4.24399 4.37170 4.40658 4.60491 4.81497 4.98852 5.08888 5.14152 5.19478 5.26271 5.32680 5.40803 5.46651 5.51469 5.59306 5.60246 5.74396 5.76587 5.86464 5.90172 6.11627 6.24369 6.36671 6.41926 6.43079 6.55077 6.63077 7.00588 7.37334 7.42184 7.66394 7.97856 8.04821 8.14055 8.47001 9.05146 9.65986 10.35014 11.30113 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.022552 B = 0.004570 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.294788 B = 6125.136547 C = 6722.089804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.618 5.618 3 C 0.104 3.896 4 C -0.118 4.118 5 C -0.143 4.143 6 H 0.122 0.878 7 C 0.551 3.449 8 O -0.548 6.548 9 N -0.605 5.605 10 C 0.084 3.916 11 C 0.141 3.859 12 H 0.109 0.891 13 C -0.152 4.152 14 C 0.097 3.903 15 H 0.112 0.888 16 C 0.175 3.825 17 N -0.597 5.597 18 C -0.232 4.232 19 H 0.081 0.919 20 C -0.005 4.005 21 N -0.920 5.920 22 Si 0.912 3.088 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.546 3.454 27 O -0.528 6.528 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.085 0.915 39 H 0.056 0.944 40 H 0.047 0.953 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.883 -3.163 -7.414 12.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.352 5.352 3 C -0.019 4.019 4 C -0.156 4.156 5 C -0.168 4.168 6 H 0.140 0.860 7 C 0.338 3.662 8 O -0.426 6.426 9 N -0.339 5.339 10 C -0.041 4.041 11 C 0.032 3.968 12 H 0.127 0.873 13 C -0.192 4.192 14 C -0.005 4.005 15 H 0.130 0.870 16 C 0.050 3.950 17 N -0.322 5.322 18 C -0.360 4.360 19 H 0.099 0.901 20 C -0.201 4.201 21 N -0.566 5.566 22 Si 0.742 3.258 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.206 1.206 26 C 0.332 3.668 27 O -0.404 6.404 28 H 0.100 0.900 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.119 0.881 34 H 0.112 0.888 35 H 0.093 0.907 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.104 0.896 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.550 -3.422 -6.837 13.029 hybrid contribution 0.735 0.816 -0.293 1.137 sum -9.816 -2.605 -7.130 12.409 Atomic orbital electron populations 1.21535 0.77936 1.03687 1.01392 1.47987 1.06503 1.07293 1.73426 1.22111 0.90074 0.87161 1.02505 1.22566 0.97491 0.92635 1.02915 1.22084 0.95734 1.00461 0.98534 0.86022 1.19137 0.80819 0.77069 0.89174 1.90703 1.59203 1.52305 1.40391 1.49574 1.05729 1.68560 1.09987 1.23692 0.90132 1.00010 0.90257 1.23168 0.92222 0.88407 0.93010 0.87349 1.24171 0.98450 0.96425 1.00112 1.24342 0.90841 0.98597 0.86747 0.86998 1.21928 0.87829 0.91505 0.93721 1.45256 1.28506 1.15255 1.43146 1.19053 1.01402 0.97812 1.17706 0.90123 1.24804 0.98908 0.97766 0.98656 1.69911 1.37518 1.20738 1.28467 0.86127 0.81880 0.80330 0.77425 1.21613 1.21691 1.20632 1.20093 0.87817 0.84383 0.74499 1.90695 1.78204 1.21098 1.50416 0.90006 0.91976 0.92108 0.90006 0.90468 0.88066 0.88843 0.90704 0.92462 0.91550 0.89650 0.92589 0.93455 0.93569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.98 11.14 59.85 0.67 1.65 16 2 N -0.62 -8.17 3.33 -180.28 -0.60 -8.77 16 3 C 0.10 1.16 7.35 -3.12 -0.02 1.13 16 4 C -0.12 -1.38 6.70 -25.10 -0.17 -1.55 16 5 C -0.14 -2.12 2.98 -91.78 -0.27 -2.40 16 6 H 0.12 1.59 7.47 -51.93 -0.39 1.20 16 7 C 0.55 10.19 6.95 -10.99 -0.08 10.11 16 8 O -0.55 -11.94 16.67 5.56 0.09 -11.85 16 9 N -0.61 -10.96 3.01 -155.23 -0.47 -11.43 16 10 C 0.08 1.35 5.78 -0.60 0.00 1.35 16 11 C 0.14 2.49 5.53 -62.56 -0.35 2.15 16 12 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 13 C -0.15 -2.54 6.82 -22.30 -0.15 -2.69 16 14 C 0.10 1.86 5.20 -62.55 -0.33 1.53 16 15 H 0.11 2.13 8.03 -51.93 -0.42 1.71 16 16 C 0.18 4.04 4.76 -1.67 -0.01 4.03 16 17 N -0.60 -13.71 3.02 -156.34 -0.47 -14.18 16 18 C -0.23 -5.91 10.37 -15.06 -0.16 -6.06 16 19 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 20 C 0.00 -0.12 5.49 -17.43 -0.10 -0.22 16 21 N -0.92 -25.82 10.56 55.49 0.59 -25.24 16 22 Si 0.91 20.95 29.55 -169.99 -5.02 15.93 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 C 0.55 8.94 6.78 -10.86 -0.07 8.87 16 27 O -0.53 -10.37 17.35 5.55 0.10 -10.27 16 28 H 0.08 0.92 7.53 -51.93 -0.39 0.52 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.10 1.34 7.89 -51.93 -0.41 0.93 16 34 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.06 0.77 8.10 -51.93 -0.42 0.35 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 39 H 0.06 1.44 7.46 -51.93 -0.39 1.05 16 40 H 0.05 1.24 7.67 -51.93 -0.40 0.84 16 41 H 0.25 7.00 8.31 -40.82 -0.34 6.67 16 LS Contribution 334.23 15.07 5.04 5.04 Total: -1.00 -33.58 334.23 -7.95 -41.53 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -6.16 Total: 1.33 kcal Atomic # 6 Polarization: 18.94 SS G_CDS: -1.03 Total: 17.90 kcal Atomic # 7 Polarization: -58.66 SS G_CDS: -0.95 Total: -59.62 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: 0.19 Total: -22.12 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.58 -7.95 -41.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032577052.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.802 kcal (2) G-P(sol) polarization free energy of solvation -33.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds