Wall clock time and date at job start Tue Mar 31 2020 03:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46766 * 124.35131 * 2 1 4 4 C 1.54482 * 105.47330 * 196.99336 * 3 2 1 5 5 C 1.54627 * 101.76480 * 334.57826 * 4 3 2 6 6 H 1.08999 * 110.59698 * 143.53014 * 5 4 3 7 7 C 1.50700 * 110.48976 * 266.12456 * 5 4 3 8 8 O 1.21282 * 120.00120 * 89.41213 * 7 5 4 9 9 N 1.34776 * 119.99583 * 269.41826 * 7 5 4 10 10 C 1.49769 * 127.90456 * 354.09104 * 9 7 5 11 11 C 1.56020 * 105.31867 * 182.13371 * 10 9 7 12 12 H 1.08998 * 116.89153 * 159.53750 * 11 10 9 13 13 C 1.57078 * 99.60722 * 33.13273 * 11 10 9 14 14 C 1.49291 * 126.94161 * 174.86598 * 9 7 5 15 15 H 1.09001 * 116.15641 * 15.84068 * 14 9 7 16 16 C 1.56018 * 104.09206 * 246.69335 * 14 9 7 17 17 N 1.47876 * 105.10551 * 287.92353 * 16 14 9 18 18 C 1.36939 * 126.94130 * 181.97798 * 17 16 14 19 19 H 1.08000 * 119.99244 * 180.02562 * 18 17 16 20 20 C 1.38808 * 120.00070 * 0.02592 * 18 17 16 21 21 N 1.31619 * 120.00582 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99838 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47045 * 89.99837 * 22 20 18 24 24 H 1.48498 * 109.47434 * 209.99856 * 22 20 18 25 25 H 1.48503 * 109.46937 * 330.00013 * 22 20 18 26 26 C 1.34412 * 124.35002 * 179.97438 * 2 1 3 27 27 O 1.21288 * 124.94307 * 359.65165 * 26 2 1 28 28 H 1.08996 * 109.47011 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47176 * 300.00815 * 1 2 3 30 30 H 1.09004 * 109.46531 * 60.00363 * 1 2 3 31 31 H 1.09001 * 110.24194 * 315.98772 * 3 2 1 32 32 H 1.08999 * 110.25114 * 77.90249 * 3 2 1 33 33 H 1.08999 * 110.96806 * 216.46301 * 4 3 2 34 34 H 1.08994 * 110.96945 * 92.70019 * 4 3 2 35 35 H 1.08997 * 109.93081 * 63.29678 * 10 9 7 36 36 H 1.09000 * 110.48425 * 301.25205 * 10 9 7 37 37 H 1.08998 * 112.37351 * 64.27410 * 13 11 10 38 38 H 1.09004 * 112.37084 * 191.71203 * 13 11 10 39 39 H 1.09004 * 110.31790 * 169.01313 * 16 14 9 40 40 H 1.09006 * 110.39953 * 46.87332 * 16 14 9 41 41 H 0.96994 * 120.00112 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2932 1.2117 0.0000 4 6 3.7012 0.7485 -0.4351 5 6 3.6899 -0.7378 -0.0091 6 1 4.2333 -1.3477 -0.7307 7 6 4.2834 -0.8967 1.3670 8 8 3.5723 -0.8208 2.3466 9 7 5.6044 -1.1230 1.5091 10 6 6.6168 -1.3682 0.4330 11 6 7.9621 -1.6190 1.1823 12 1 8.7421 -2.1455 0.6322 13 6 7.4151 -2.3268 2.4734 14 6 6.3693 -1.1979 2.7889 15 1 5.7776 -1.3225 3.6958 16 6 7.3086 0.0471 2.7435 17 7 8.3309 -0.2784 1.7258 18 6 9.3995 0.4941 1.3564 19 1 10.0808 0.1444 0.5948 20 6 9.6071 1.7263 1.9607 21 7 8.7766 2.1526 2.8886 22 14 11.0654 2.7797 1.4573 23 1 10.6681 3.6734 0.3399 24 1 11.5066 3.5997 2.6140 25 1 12.1807 1.9033 1.0176 26 6 2.2235 -1.1097 0.0005 27 8 1.7946 -2.2442 0.0070 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 -0.3632 0.5138 -0.8901 31 1 1.8988 1.9381 -0.7106 32 1 2.3291 1.6441 0.9999 33 1 4.4754 1.3010 0.0973 34 1 3.8274 0.8443 -1.5135 35 1 6.6983 -0.4901 -0.2076 36 1 6.3429 -2.2434 -0.1562 37 1 6.9398 -3.2826 2.2529 38 1 8.1745 -2.4176 3.2501 39 1 7.7778 0.2028 3.7149 40 1 6.7491 0.9346 2.4475 41 1 8.9215 3.0138 3.3106 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032577052.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:06 Heat of formation + Delta-G solvation = -21.756813 kcal Electronic energy + Delta-G solvation = -24668.408543 eV Core-core repulsion = 21163.457314 eV Total energy + Delta-G solvation = -3504.951229 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 2.32 seconds Orbital eigenvalues (eV) -42.16922 -41.05087 -39.12076 -37.52644 -35.42930 -34.15599 -33.02116 -30.77386 -30.25328 -28.91250 -27.72092 -26.95691 -25.36022 -23.70562 -22.27786 -21.42557 -20.70940 -19.96335 -19.10367 -18.22811 -17.80063 -17.50527 -16.91382 -16.53528 -16.26262 -15.95880 -15.59395 -15.06967 -14.90718 -14.72845 -14.44248 -13.92810 -13.78238 -13.70973 -13.46681 -13.35371 -13.19902 -13.06762 -12.82143 -12.67090 -12.51263 -12.48323 -12.28712 -12.13973 -12.03133 -11.85557 -11.50440 -11.14460 -10.96380 -10.68655 -9.78801 -9.59992 -8.88562 -7.81149 -5.16657 1.18810 1.46043 1.51120 1.52023 1.60441 1.89124 2.12239 2.51734 3.11916 3.31170 3.38057 3.39883 3.51107 3.77015 3.86485 3.89587 4.02704 4.08647 4.21276 4.31434 4.37606 4.57486 4.59709 4.62821 4.67055 4.79203 4.81741 4.84970 4.93133 4.97299 5.00563 5.13979 5.23269 5.46357 5.47887 5.53017 5.68558 5.92956 6.12460 6.55168 6.95552 7.03437 7.06483 7.74182 8.44603 9.30164 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.022552 B = 0.004570 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.294788 B = 6125.136547 C = 6722.089804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.614 5.614 3 C 0.102 3.898 4 C -0.110 4.110 5 C -0.139 4.139 6 H 0.144 0.856 7 C 0.545 3.455 8 O -0.590 6.590 9 N -0.607 5.607 10 C 0.090 3.910 11 C 0.137 3.863 12 H 0.139 0.861 13 C -0.133 4.133 14 C 0.097 3.903 15 H 0.106 0.894 16 C 0.191 3.809 17 N -0.615 5.615 18 C -0.228 4.228 19 H 0.097 0.903 20 C -0.067 4.067 21 N -0.957 5.957 22 Si 0.974 3.026 23 H -0.288 1.288 24 H -0.304 1.304 25 H -0.265 1.265 26 C 0.533 3.467 27 O -0.572 6.572 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.096 0.904 31 H 0.125 0.875 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.131 0.869 35 H 0.070 0.930 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.081 0.919 39 H 0.016 0.984 40 H 0.004 0.996 41 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.752 -3.949 -10.208 14.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.347 5.347 3 C -0.020 4.020 4 C -0.148 4.148 5 C -0.164 4.164 6 H 0.161 0.839 7 C 0.333 3.667 8 O -0.472 6.472 9 N -0.340 5.340 10 C -0.033 4.033 11 C 0.031 3.969 12 H 0.157 0.843 13 C -0.172 4.172 14 C -0.006 4.006 15 H 0.124 0.876 16 C 0.065 3.935 17 N -0.339 5.339 18 C -0.357 4.357 19 H 0.114 0.886 20 C -0.260 4.260 21 N -0.606 5.606 22 Si 0.804 3.196 23 H -0.215 1.215 24 H -0.232 1.232 25 H -0.189 1.189 26 C 0.320 3.680 27 O -0.451 6.451 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.114 0.886 31 H 0.142 0.858 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.149 0.851 35 H 0.088 0.912 36 H 0.118 0.882 37 H 0.115 0.885 38 H 0.100 0.900 39 H 0.035 0.965 40 H 0.023 0.977 41 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -10.414 -4.219 -9.683 14.833 hybrid contribution 0.657 1.055 0.598 1.380 sum -9.757 -3.164 -9.085 13.702 Atomic orbital electron populations 1.21773 0.76271 1.03481 1.03622 1.48212 1.07783 1.07094 1.71577 1.22293 0.89766 0.87019 1.02945 1.22630 0.97284 0.89997 1.04870 1.22104 0.94948 1.02931 0.96384 0.83865 1.19817 0.80598 0.75925 0.90338 1.90675 1.60215 1.54076 1.42226 1.49652 1.06091 1.68226 1.09989 1.23671 0.88553 1.01610 0.89500 1.23574 0.93638 0.85977 0.93723 0.84329 1.24085 0.97246 0.96568 0.99349 1.24151 0.91019 0.97776 0.87650 0.87601 1.21495 0.88081 0.91945 0.91951 1.45485 1.27864 1.17257 1.43327 1.19531 1.01663 0.97699 1.16781 0.88573 1.25588 1.01515 0.99499 0.99348 1.70144 1.39524 1.20644 1.30303 0.85133 0.79485 0.78691 0.76339 1.21502 1.23176 1.18947 1.20394 0.88710 0.84475 0.74436 1.90661 1.78974 1.22751 1.52744 0.91459 0.90965 0.88593 0.85752 0.92045 0.89927 0.85093 0.91189 0.88184 0.88463 0.89997 0.96538 0.97733 0.94731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.65 11.14 127.77 1.42 3.08 16 2 N -0.61 -15.18 3.33 -842.87 -2.81 -17.99 16 3 C 0.10 2.03 7.35 86.83 0.64 2.66 16 4 C -0.11 -2.33 6.70 31.65 0.21 -2.11 16 5 C -0.14 -3.89 2.98 -11.55 -0.03 -3.92 16 6 H 0.14 3.30 7.47 -2.39 -0.02 3.28 16 7 C 0.54 19.95 6.95 87.66 0.61 20.56 16 8 O -0.59 -26.35 16.67 -3.03 -0.05 -26.40 16 9 N -0.61 -21.43 3.01 -763.41 -2.30 -23.73 16 10 C 0.09 2.63 5.78 86.79 0.50 3.13 16 11 C 0.14 4.48 5.53 46.93 0.26 4.74 16 12 H 0.14 3.74 8.14 -2.39 -0.02 3.72 16 13 C -0.13 -4.17 6.82 33.46 0.23 -3.94 16 14 C 0.10 3.75 5.20 46.93 0.24 3.99 16 15 H 0.11 4.18 8.03 -2.39 -0.02 4.16 16 16 C 0.19 9.17 4.76 87.16 0.41 9.59 16 17 N -0.61 -27.97 3.02 -648.54 -1.96 -29.93 16 18 C -0.23 -11.48 10.37 84.03 0.87 -10.60 16 19 H 0.10 4.45 7.83 -2.91 -0.02 4.43 16 20 C -0.07 -3.59 5.49 84.86 0.47 -3.12 16 21 N -0.96 -56.06 10.56 21.65 0.23 -55.83 16 22 Si 0.97 43.39 29.55 68.60 2.03 45.42 16 23 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 24 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 25 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 26 C 0.53 16.92 6.78 87.90 0.60 17.51 16 27 O -0.57 -22.33 17.35 -3.05 -0.05 -22.39 16 28 H 0.07 1.46 7.53 -2.39 -0.02 1.44 16 29 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 31 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.08 2.11 7.89 -2.39 -0.02 2.09 16 34 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.10 2.18 8.10 -2.39 -0.02 2.16 16 37 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 38 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 39 H 0.02 0.91 7.46 -2.39 -0.02 0.89 16 40 H 0.00 0.25 7.67 -2.38 -0.02 0.23 16 41 H 0.24 14.13 8.31 -92.71 -0.77 13.35 16 Total: -1.00 -77.43 334.23 2.54 -74.89 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 1.02 Total: 14.39 kcal Atomic # 6 Polarization: 35.14 SS G_CDS: 6.43 Total: 41.57 kcal Atomic # 7 Polarization: -120.64 SS G_CDS: -6.84 Total: -127.48 kcal Atomic # 8 Polarization: -48.68 SS G_CDS: -0.10 Total: -48.78 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -77.43 2.54 -74.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032577052.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.135 kcal (2) G-P(sol) polarization free energy of solvation -77.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.33 seconds