Wall clock time and date at job start Tue Mar 31 2020 03:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36596 * 126.58419 * 2 1 4 4 C 1.47521 * 125.76966 * 359.97438 * 3 2 1 5 5 O 1.21602 * 119.99905 * 355.48577 * 4 3 2 6 6 N 1.34773 * 120.00209 * 175.48262 * 4 3 2 7 7 C 1.46499 * 120.00050 * 2.52037 * 6 4 3 8 8 C 1.46504 * 119.99989 * 182.51629 * 6 4 3 9 9 H 1.08993 * 110.64527 * 358.31514 * 8 6 4 10 10 C 1.55155 * 110.71749 * 234.97546 * 8 6 4 11 11 C 1.54908 * 101.58683 * 277.13991 * 10 8 6 12 12 N 1.47425 * 104.82814 * 322.99184 * 11 10 8 13 13 C 1.36939 * 125.64918 * 204.08911 * 12 11 10 14 14 H 1.08001 * 120.00286 * 180.02562 * 13 12 11 15 15 C 1.38818 * 119.99724 * 0.04349 * 13 12 11 16 16 N 1.31617 * 119.99773 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 119.99858 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47195 * 90.00154 * 17 15 13 19 19 H 1.48499 * 109.47041 * 210.00043 * 17 15 13 20 20 H 1.48497 * 109.47442 * 330.00388 * 17 15 13 21 21 C 1.47022 * 108.70720 * 24.13082 * 12 11 10 22 22 N 1.34398 * 108.45985 * 179.97438 * 3 2 1 23 23 N 1.28756 * 109.52373 * 0.02562 * 22 3 2 24 24 N 1.34814 * 126.57879 * 179.97438 * 2 1 3 25 25 C 1.46505 * 126.59663 * 0.02562 * 24 2 1 26 26 H 1.09001 * 109.46989 * 89.99473 * 1 2 3 27 27 H 1.09003 * 109.47209 * 210.00197 * 1 2 3 28 28 H 1.09002 * 109.47124 * 330.00097 * 1 2 3 29 29 H 1.08998 * 109.47347 * 84.09782 * 7 6 4 30 30 H 1.09000 * 109.47430 * 204.10271 * 7 6 4 31 31 H 1.09006 * 109.46582 * 324.09731 * 7 6 4 32 32 H 1.09005 * 111.00400 * 35.21965 * 10 8 6 33 33 H 1.09005 * 111.00476 * 159.06633 * 10 8 6 34 34 H 1.08996 * 110.37083 * 204.15662 * 11 10 8 35 35 H 1.09000 * 110.45668 * 81.87604 * 11 10 8 36 36 H 0.97008 * 119.99802 * 179.97438 * 16 15 13 37 37 H 1.09004 * 109.87816 * 239.52368 * 21 12 11 38 38 H 1.08995 * 109.88646 * 118.35455 * 21 12 11 39 39 H 1.08996 * 109.47365 * 270.02646 * 25 24 2 40 40 H 1.09008 * 109.46621 * 30.02578 * 25 24 2 41 41 H 1.08997 * 109.47432 * 150.02169 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0968 0.0000 4 6 1.8739 2.5026 -0.0005 5 8 0.6892 2.7638 -0.0839 6 7 2.7783 3.4976 0.0915 7 6 4.2089 3.1852 0.1363 8 6 2.3309 4.8915 0.1465 9 1 1.2450 4.9497 0.0728 10 6 3.0066 5.7294 -0.9709 11 6 4.3706 6.0719 -0.3214 12 7 4.0646 6.2947 1.1034 13 6 4.8094 7.0477 1.9714 14 1 4.4996 7.1495 3.0010 15 6 5.9625 7.6806 1.5278 16 7 6.3401 7.5565 0.2731 17 14 6.9782 8.7084 2.7116 18 1 7.9988 7.8488 3.3634 19 1 7.6540 9.7999 1.9652 20 1 6.0894 9.2935 3.7473 21 6 2.8278 5.5738 1.4385 22 7 3.5984 0.6788 0.0006 23 7 3.6298 -0.6084 0.0004 24 7 2.3104 -1.0826 0.0005 25 6 1.8863 -2.4849 0.0006 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 4.5853 3.0590 -0.8788 30 1 4.7438 4.0005 0.6235 31 1 4.3621 2.2635 0.6978 32 1 3.1425 5.1368 -1.8757 33 1 2.4356 6.6340 -1.1805 34 1 4.7862 6.9761 -0.7660 35 1 5.0659 5.2401 -0.4345 36 1 7.1457 7.9991 -0.0371 37 1 2.0760 6.2756 1.7998 38 1 3.0320 4.8213 2.2001 39 1 1.7803 -2.8324 1.0282 40 1 0.9296 -2.5752 -0.5140 41 1 2.6334 -3.0905 -0.5125 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032970299.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:24 Heat of formation + Delta-G solvation = 114.315014 kcal Electronic energy + Delta-G solvation = -24201.126389 eV Core-core repulsion = 20734.368428 eV Total energy + Delta-G solvation = -3466.757960 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.33787 -39.54563 -37.32924 -35.22525 -34.14486 -32.48353 -31.92818 -29.32306 -28.36881 -27.71244 -27.60359 -25.96890 -24.43952 -23.13720 -21.55612 -20.36306 -20.09078 -18.83315 -17.44092 -16.88786 -16.58220 -16.15210 -15.70747 -14.91695 -14.66984 -14.37234 -14.17935 -13.70876 -13.63731 -13.58039 -13.24250 -12.93131 -12.76742 -12.62026 -12.12629 -12.04957 -11.77256 -11.68659 -11.49512 -11.04395 -10.89703 -10.80112 -10.69417 -10.31934 -10.19419 -10.07698 -9.80960 -9.51884 -9.41061 -9.18474 -8.58999 -8.12341 -6.79766 -5.61635 -3.03471 1.02810 1.76900 1.90027 3.30298 3.43192 3.44870 3.48338 3.49992 4.11850 4.14351 4.47653 4.52717 4.62322 4.64181 4.88429 5.10478 5.24091 5.44151 5.48031 5.50577 5.53867 5.60741 5.75472 5.80494 5.94534 6.02237 6.23108 6.26828 6.37871 6.45056 6.63953 6.65127 6.70405 6.81355 7.11605 7.55160 7.66447 7.76361 7.90099 7.93671 8.39368 8.42869 9.25440 9.86021 10.50782 11.41780 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.028775 B = 0.003769 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.819617 B = 7427.762258 C = 7879.106305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.118 3.882 3 C -0.095 4.095 4 C 0.598 3.402 5 O -0.552 6.552 6 N -0.575 5.575 7 C 0.063 3.937 8 C 0.125 3.875 9 H 0.101 0.899 10 C -0.154 4.154 11 C 0.143 3.857 12 N -0.603 5.603 13 C -0.222 4.222 14 H 0.077 0.923 15 C -0.010 4.010 16 N -0.921 5.921 17 Si 0.914 3.086 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.282 1.282 21 C 0.127 3.873 22 N -0.193 5.193 23 N -0.076 5.076 24 N -0.368 5.368 25 C 0.089 3.911 26 H 0.090 0.910 27 H 0.072 0.928 28 H 0.111 0.889 29 H 0.052 0.948 30 H 0.101 0.899 31 H 0.085 0.915 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.106 0.894 35 H 0.025 0.975 36 H 0.252 0.748 37 H 0.033 0.967 38 H 0.027 0.973 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.449 -18.890 -2.563 22.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.020 4.020 3 C -0.234 4.234 4 C 0.384 3.616 5 O -0.431 6.431 6 N -0.304 5.304 7 C -0.080 4.080 8 C 0.022 3.978 9 H 0.119 0.881 10 C -0.193 4.193 11 C 0.019 3.981 12 N -0.329 5.329 13 C -0.350 4.350 14 H 0.095 0.905 15 C -0.206 4.206 16 N -0.570 5.570 17 Si 0.745 3.255 18 H -0.217 1.217 19 H -0.217 1.217 20 H -0.208 1.208 21 C 0.000 4.000 22 N -0.066 5.066 23 N -0.055 5.055 24 N -0.154 5.154 25 C -0.053 4.053 26 H 0.109 0.891 27 H 0.091 0.909 28 H 0.130 0.870 29 H 0.070 0.930 30 H 0.120 0.880 31 H 0.103 0.897 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.123 0.877 35 H 0.042 0.958 36 H 0.062 0.938 37 H 0.051 0.949 38 H 0.045 0.955 39 H 0.106 0.894 40 H 0.113 0.887 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.366 -19.044 -2.594 21.837 hybrid contribution -0.226 0.412 0.594 0.757 sum -10.591 -18.632 -2.000 21.525 Atomic orbital electron populations 1.20671 0.84723 1.05181 1.04519 1.21880 0.96155 0.86327 0.97627 1.21274 0.88850 0.95562 1.17742 1.16792 0.85372 0.82479 0.76975 1.90711 1.16053 1.83446 1.52864 1.47637 1.07513 1.05738 1.69537 1.22500 0.79480 1.03682 1.02317 1.22207 0.99439 0.78921 0.97216 0.88091 1.23340 1.00683 0.98546 0.96732 1.22156 0.90360 1.01906 0.83722 1.44542 1.24471 1.56578 1.07357 1.19068 1.02858 1.21557 0.91509 0.90536 1.24768 0.98276 1.00925 0.96593 1.69803 1.25496 1.47853 1.13815 0.86082 0.80124 0.79671 0.79670 1.21678 1.21724 1.20771 1.21642 0.90208 0.94104 0.93999 1.74841 1.18832 1.03315 1.09627 1.82024 0.95928 1.04159 1.23423 1.50271 1.06622 1.07594 1.50921 1.22121 1.02308 0.76327 1.04530 0.89124 0.90906 0.87012 0.92980 0.88025 0.89665 0.92009 0.90978 0.87677 0.95761 0.93766 0.94869 0.95516 0.89430 0.88689 0.88139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.77 9.33 36.00 0.34 -0.44 16 2 C 0.12 1.41 7.02 -81.88 -0.57 0.83 16 3 C -0.10 -1.48 6.70 -83.55 -0.56 -2.04 16 4 C 0.60 10.50 7.67 -12.48 -0.10 10.40 16 5 O -0.55 -10.06 14.14 5.28 0.07 -9.99 16 6 N -0.57 -10.64 2.82 -173.06 -0.49 -11.13 16 7 C 0.06 1.17 7.83 59.85 0.47 1.64 16 8 C 0.13 2.42 3.58 -66.09 -0.24 2.18 16 9 H 0.10 1.88 6.99 -51.93 -0.36 1.52 16 10 C -0.15 -3.04 6.53 -24.58 -0.16 -3.20 16 11 C 0.14 3.43 4.99 -2.53 -0.01 3.42 16 12 N -0.60 -15.34 2.97 -170.07 -0.51 -15.84 16 13 C -0.22 -6.16 10.27 -15.06 -0.15 -6.31 16 14 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 15 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 16 N -0.92 -26.63 10.09 55.49 0.56 -26.07 16 17 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 C 0.13 2.76 6.30 -3.06 -0.02 2.74 16 22 N -0.19 -3.14 8.79 32.85 0.29 -2.85 16 23 N -0.08 -1.10 13.78 60.35 0.83 -0.27 16 24 N -0.37 -3.93 4.03 -63.59 -0.26 -4.19 16 25 C 0.09 0.42 11.18 59.85 0.67 1.09 16 26 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 0.37 7.82 -51.93 -0.41 -0.04 16 28 H 0.11 1.16 6.53 -51.93 -0.34 0.82 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.10 2.19 4.76 -51.93 -0.25 1.94 16 31 H 0.09 1.54 5.30 -51.93 -0.28 1.27 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.11 2.86 5.87 -51.93 -0.31 2.56 16 35 H 0.02 0.61 5.54 -51.93 -0.29 0.32 16 36 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 37 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.03 0.60 8.04 -51.93 -0.42 0.18 16 39 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.09 0.21 7.76 -51.92 -0.40 -0.19 16 41 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 326.17 15.07 4.92 4.92 Total: -1.00 -33.04 326.17 -5.59 -38.63 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -5.55 Total: -0.27 kcal Atomic # 6 Polarization: 10.37 SS G_CDS: -0.44 Total: 9.93 kcal Atomic # 7 Polarization: -60.77 SS G_CDS: 0.43 Total: -60.34 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.07 Total: -9.99 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.04 -5.59 -38.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032970299.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.948 kcal (2) G-P(sol) polarization free energy of solvation -33.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds