Wall clock time and date at job start Tue Mar 31 2020 03:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36596 * 126.58419 * 2 1 4 4 C 1.47521 * 125.76966 * 359.97438 * 3 2 1 5 5 O 1.21602 * 119.99905 * 355.48577 * 4 3 2 6 6 N 1.34773 * 120.00209 * 175.48262 * 4 3 2 7 7 C 1.46499 * 120.00050 * 2.52037 * 6 4 3 8 8 C 1.46504 * 119.99989 * 182.51629 * 6 4 3 9 9 H 1.08993 * 110.64527 * 358.31514 * 8 6 4 10 10 C 1.55155 * 110.71749 * 234.97546 * 8 6 4 11 11 C 1.54908 * 101.58683 * 277.13991 * 10 8 6 12 12 N 1.47425 * 104.82814 * 322.99184 * 11 10 8 13 13 C 1.36939 * 125.64918 * 204.08911 * 12 11 10 14 14 H 1.08001 * 120.00286 * 180.02562 * 13 12 11 15 15 C 1.38818 * 119.99724 * 0.04349 * 13 12 11 16 16 N 1.31617 * 119.99773 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 119.99858 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47195 * 90.00154 * 17 15 13 19 19 H 1.48499 * 109.47041 * 210.00043 * 17 15 13 20 20 H 1.48497 * 109.47442 * 330.00388 * 17 15 13 21 21 C 1.47022 * 108.70720 * 24.13082 * 12 11 10 22 22 N 1.34398 * 108.45985 * 179.97438 * 3 2 1 23 23 N 1.28756 * 109.52373 * 0.02562 * 22 3 2 24 24 N 1.34814 * 126.57879 * 179.97438 * 2 1 3 25 25 C 1.46505 * 126.59663 * 0.02562 * 24 2 1 26 26 H 1.09001 * 109.46989 * 89.99473 * 1 2 3 27 27 H 1.09003 * 109.47209 * 210.00197 * 1 2 3 28 28 H 1.09002 * 109.47124 * 330.00097 * 1 2 3 29 29 H 1.08998 * 109.47347 * 84.09782 * 7 6 4 30 30 H 1.09000 * 109.47430 * 204.10271 * 7 6 4 31 31 H 1.09006 * 109.46582 * 324.09731 * 7 6 4 32 32 H 1.09005 * 111.00400 * 35.21965 * 10 8 6 33 33 H 1.09005 * 111.00476 * 159.06633 * 10 8 6 34 34 H 1.08996 * 110.37083 * 204.15662 * 11 10 8 35 35 H 1.09000 * 110.45668 * 81.87604 * 11 10 8 36 36 H 0.97008 * 119.99802 * 179.97438 * 16 15 13 37 37 H 1.09004 * 109.87816 * 239.52368 * 21 12 11 38 38 H 1.08995 * 109.88646 * 118.35455 * 21 12 11 39 39 H 1.08996 * 109.47365 * 270.02646 * 25 24 2 40 40 H 1.09008 * 109.46621 * 30.02578 * 25 24 2 41 41 H 1.08997 * 109.47432 * 150.02169 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0968 0.0000 4 6 1.8739 2.5026 -0.0005 5 8 0.6892 2.7638 -0.0839 6 7 2.7783 3.4976 0.0915 7 6 4.2089 3.1852 0.1363 8 6 2.3309 4.8915 0.1465 9 1 1.2450 4.9497 0.0728 10 6 3.0066 5.7294 -0.9709 11 6 4.3706 6.0719 -0.3214 12 7 4.0646 6.2947 1.1034 13 6 4.8094 7.0477 1.9714 14 1 4.4996 7.1495 3.0010 15 6 5.9625 7.6806 1.5278 16 7 6.3401 7.5565 0.2731 17 14 6.9782 8.7084 2.7116 18 1 7.9988 7.8488 3.3634 19 1 7.6540 9.7999 1.9652 20 1 6.0894 9.2935 3.7473 21 6 2.8278 5.5738 1.4385 22 7 3.5984 0.6788 0.0006 23 7 3.6298 -0.6084 0.0004 24 7 2.3104 -1.0826 0.0005 25 6 1.8863 -2.4849 0.0006 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5138 29 1 4.5853 3.0590 -0.8788 30 1 4.7438 4.0005 0.6235 31 1 4.3621 2.2635 0.6978 32 1 3.1425 5.1368 -1.8757 33 1 2.4356 6.6340 -1.1805 34 1 4.7862 6.9761 -0.7660 35 1 5.0659 5.2401 -0.4345 36 1 7.1457 7.9991 -0.0371 37 1 2.0760 6.2756 1.7998 38 1 3.0320 4.8213 2.2001 39 1 1.7803 -2.8324 1.0282 40 1 0.9296 -2.5752 -0.5140 41 1 2.6334 -3.0905 -0.5125 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032970299.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:23 Heat of formation + Delta-G solvation = 91.831836 kcal Electronic energy + Delta-G solvation = -24202.101333 eV Core-core repulsion = 20734.368428 eV Total energy + Delta-G solvation = -3467.732904 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.33849 -41.01138 -38.94992 -36.31036 -35.59645 -33.96120 -33.23342 -31.12793 -29.79859 -28.90543 -28.34259 -27.56744 -26.27894 -24.43993 -22.60388 -22.01528 -21.51869 -20.26233 -18.94830 -18.58064 -17.67881 -17.45959 -16.75045 -16.67363 -16.18380 -15.71646 -15.60853 -15.26628 -14.50071 -14.38234 -14.26422 -14.08995 -13.98491 -13.75752 -13.61670 -13.43424 -13.28852 -13.23157 -12.94813 -12.78278 -12.71963 -12.40321 -12.11747 -11.99713 -11.82232 -11.70633 -11.39229 -11.11334 -10.91525 -10.63948 -10.23678 -9.61672 -8.85256 -7.73716 -5.18015 0.11370 0.58659 1.15784 1.49012 1.50370 1.59045 1.93863 2.16913 2.52065 3.14635 3.36250 3.38726 3.64378 3.67515 3.74307 3.89614 4.01420 4.26783 4.34933 4.36595 4.43412 4.59101 4.65386 4.67415 4.68184 4.71126 4.75249 4.82931 4.92363 5.03516 5.06965 5.08757 5.24049 5.47946 5.52844 5.58542 5.69165 5.85316 6.33822 6.35365 6.83383 7.08953 7.14065 7.80003 8.44222 9.27521 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.028775 B = 0.003769 C = 0.003553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.819617 B = 7427.762258 C = 7879.106305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.135 3.865 3 C -0.132 4.132 4 C 0.600 3.400 5 O -0.560 6.560 6 N -0.583 5.583 7 C 0.083 3.917 8 C 0.138 3.862 9 H 0.115 0.885 10 C -0.138 4.138 11 C 0.149 3.851 12 N -0.619 5.619 13 C -0.238 4.238 14 H 0.078 0.922 15 C -0.062 4.062 16 N -0.945 5.945 17 Si 0.978 3.022 18 H -0.289 1.289 19 H -0.293 1.293 20 H -0.271 1.271 21 C 0.128 3.872 22 N -0.223 5.223 23 N -0.099 5.099 24 N -0.352 5.352 25 C 0.072 3.928 26 H 0.107 0.893 27 H 0.114 0.886 28 H 0.092 0.908 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.010 0.990 36 H 0.247 0.753 37 H 0.040 0.960 38 H 0.020 0.980 39 H 0.108 0.892 40 H 0.129 0.871 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.435 -21.016 -2.370 25.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.005 4.005 3 C -0.272 4.272 4 C 0.388 3.612 5 O -0.439 6.439 6 N -0.313 5.313 7 C -0.061 4.061 8 C 0.035 3.965 9 H 0.133 0.867 10 C -0.178 4.178 11 C 0.025 3.975 12 N -0.346 5.346 13 C -0.367 4.367 14 H 0.096 0.904 15 C -0.255 4.255 16 N -0.595 5.595 17 Si 0.807 3.193 18 H -0.216 1.216 19 H -0.220 1.220 20 H -0.196 1.196 21 C 0.002 3.998 22 N -0.095 5.095 23 N -0.078 5.078 24 N -0.138 5.138 25 C -0.066 4.066 26 H 0.125 0.875 27 H 0.132 0.868 28 H 0.110 0.890 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.109 0.891 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.028 0.972 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.038 0.962 39 H 0.127 0.873 40 H 0.148 0.852 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -12.375 -21.225 -2.394 24.686 hybrid contribution 0.303 0.897 0.546 1.092 sum -12.073 -20.328 -1.849 23.715 Atomic orbital electron populations 1.20817 0.81897 1.06257 1.05804 1.22338 0.97500 0.85509 0.95131 1.21213 0.89680 0.95409 1.20861 1.17019 0.85018 0.83122 0.76076 1.90693 1.16174 1.83877 1.53171 1.47633 1.07498 1.05701 1.70477 1.22212 0.79494 1.02424 1.01925 1.22016 0.99836 0.79325 0.95361 0.86709 1.23188 0.98171 0.99308 0.97107 1.21920 0.92356 0.99731 0.83499 1.44749 1.25408 1.56685 1.07737 1.19401 1.03426 1.21748 0.92094 0.90399 1.25559 0.99446 1.02304 0.98190 1.70047 1.25555 1.48583 1.15270 0.85078 0.78484 0.77883 0.77850 1.21577 1.21969 1.19611 1.21721 0.88996 0.93884 0.95216 1.74752 1.19693 1.04366 1.10712 1.81906 0.98158 1.03497 1.24246 1.50631 1.05179 1.09381 1.48631 1.22728 1.04206 0.73073 1.06619 0.87478 0.86763 0.88956 0.93012 0.91242 0.89144 0.90586 0.90039 0.91011 0.97217 0.94356 0.94164 0.96212 0.87332 0.85242 0.87138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.17 9.33 71.23 0.66 -0.50 16 2 C 0.13 2.89 7.02 41.72 0.29 3.18 16 3 C -0.13 -4.00 6.70 40.82 0.27 -3.73 16 4 C 0.60 20.67 7.67 86.69 0.67 21.34 16 5 O -0.56 -19.68 14.14 -4.04 -0.06 -19.73 16 6 N -0.58 -21.60 2.82 -819.71 -2.31 -23.91 16 7 C 0.08 3.17 7.83 127.77 1.00 4.17 16 8 C 0.14 5.28 3.58 46.18 0.17 5.45 16 9 H 0.12 4.12 6.99 -2.39 -0.02 4.10 16 10 C -0.14 -5.47 6.53 31.99 0.21 -5.26 16 11 C 0.15 7.41 4.99 86.85 0.43 7.84 16 12 N -0.62 -32.25 2.97 -691.98 -2.06 -34.31 16 13 C -0.24 -13.47 10.27 84.03 0.86 -12.60 16 14 H 0.08 4.27 7.83 -2.91 -0.02 4.24 16 15 C -0.06 -3.54 5.49 84.86 0.47 -3.08 16 16 N -0.94 -56.29 10.09 21.65 0.22 -56.07 16 17 Si 0.98 46.19 29.55 68.60 2.03 48.22 16 18 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 19 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 20 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 21 C 0.13 5.59 6.30 86.73 0.55 6.14 16 22 N -0.22 -7.21 8.79 -50.00 -0.44 -7.65 16 23 N -0.10 -2.75 13.78 37.02 0.51 -2.24 16 24 N -0.35 -6.57 4.03 -355.09 -1.43 -8.00 16 25 C 0.07 0.39 11.18 127.77 1.43 1.82 16 26 H 0.11 1.12 8.14 -2.39 -0.02 1.11 16 27 H 0.11 0.55 7.82 -2.39 -0.02 0.53 16 28 H 0.09 1.68 6.53 -2.39 -0.02 1.66 16 29 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.07 3.12 4.76 -2.39 -0.01 3.11 16 31 H 0.09 3.38 5.30 -2.38 -0.01 3.37 16 32 H 0.08 2.78 8.14 -2.38 -0.02 2.76 16 33 H 0.08 3.06 8.14 -2.38 -0.02 3.04 16 34 H 0.07 4.07 5.87 -2.39 -0.01 4.05 16 35 H 0.01 0.52 5.54 -2.39 -0.01 0.51 16 36 H 0.25 14.31 8.31 -92.70 -0.77 13.54 16 37 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 38 H 0.02 0.90 8.04 -2.39 -0.02 0.88 16 39 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 40 H 0.13 -0.13 7.76 -2.38 -0.02 -0.15 16 41 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 Total: -1.00 -73.87 326.17 4.52 -69.36 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: 1.05 Total: 9.58 kcal Atomic # 6 Polarization: 17.75 SS G_CDS: 7.01 Total: 24.76 kcal Atomic # 7 Polarization: -126.67 SS G_CDS: -5.51 Total: -132.18 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.06 Total: -19.73 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -73.87 4.52 -69.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032970299.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.190 kcal (2) G-P(sol) polarization free energy of solvation -73.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds