Wall clock time and date at job start Tue Mar 31 2020 03:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30831 * 125.96085 * 2 1 4 4 C 1.33243 * 109.83061 * 180.12210 * 3 2 1 5 5 C 1.50692 * 125.52428 * 179.85461 * 4 3 2 6 6 C 1.50704 * 109.47015 * 269.71259 * 5 4 3 7 7 O 1.21279 * 120.00081 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99998 * 180.02562 * 6 5 4 9 9 C 1.46497 * 119.99938 * 0.02562 * 8 6 5 10 10 C 1.46498 * 120.00140 * 180.02562 * 8 6 5 11 11 H 1.09004 * 110.63933 * 358.31190 * 10 8 6 12 12 C 1.55161 * 110.87197 * 235.06285 * 10 8 6 13 13 C 1.55133 * 101.48397 * 205.89545 * 12 10 8 14 14 N 1.47421 * 104.72251 * 37.29996 * 13 12 10 15 15 C 1.36934 * 125.65030 * 155.81786 * 14 13 12 16 16 H 1.07996 * 119.99899 * 193.37640 * 15 14 13 17 17 C 1.38817 * 119.99852 * 13.37649 * 15 14 13 18 18 N 1.31616 * 119.99841 * 204.21004 * 17 15 14 19 19 Si 1.86799 * 120.00022 * 23.92761 * 17 15 14 20 20 H 1.48494 * 109.47449 * 270.28104 * 19 17 15 21 21 H 1.48501 * 109.46941 * 30.28093 * 19 17 15 22 22 H 1.48496 * 109.46798 * 150.27608 * 19 17 15 23 23 C 1.47023 * 108.70138 * 335.54938 * 14 13 12 24 24 N 1.30712 * 108.94282 * 359.58557 * 4 3 2 25 25 N 1.34425 * 125.96388 * 179.66409 * 2 1 3 26 26 H 0.97004 * 126.82103 * 0.02562 * 25 2 1 27 27 H 1.08997 * 109.47092 * 270.33125 * 1 2 3 28 28 H 1.09001 * 109.46849 * 30.33899 * 1 2 3 29 29 H 1.09004 * 109.46668 * 150.33221 * 1 2 3 30 30 H 1.09009 * 109.47022 * 149.71718 * 5 4 3 31 31 H 1.08998 * 109.47931 * 29.71424 * 5 4 3 32 32 H 1.09001 * 109.47244 * 269.99636 * 9 8 6 33 33 H 1.09001 * 109.47551 * 29.99821 * 9 8 6 34 34 H 1.09002 * 109.47646 * 150.00314 * 9 8 6 35 35 H 1.08997 * 111.00574 * 324.14045 * 12 10 8 36 36 H 1.09005 * 110.99995 * 87.95197 * 12 10 8 37 37 H 1.08999 * 110.49555 * 278.45206 * 13 12 10 38 38 H 1.09000 * 110.33859 * 156.06365 * 13 12 10 39 39 H 0.97006 * 119.99847 * 354.28405 * 18 17 15 40 40 H 1.09002 * 109.88564 * 120.70737 * 23 14 13 41 41 H 1.09004 * 109.88323 * 241.87205 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2754 1.0590 0.0000 4 6 3.5553 0.6888 -0.0027 5 6 4.7372 1.6237 -0.0067 6 6 5.1321 1.9281 -1.4288 7 8 4.5143 1.4348 -2.3485 8 7 6.1718 2.7485 -1.6786 9 6 6.9184 3.3439 -0.5676 10 6 6.5554 3.0448 -3.0611 11 1 5.9205 2.5013 -3.7609 12 6 8.0511 2.7108 -3.3035 13 6 8.3962 3.6699 -4.4729 14 7 7.6434 4.9032 -4.1805 15 6 7.9605 6.1573 -4.6297 16 1 7.4841 7.0233 -4.1945 17 6 8.8944 6.3155 -5.6445 18 7 9.5525 7.4492 -5.7623 19 14 9.2228 4.9165 -6.8380 20 1 10.3079 4.0548 -6.3042 21 1 7.9876 4.1096 -7.0067 22 1 9.6337 5.4731 -8.1520 23 6 6.4920 4.5628 -3.3319 24 7 3.6195 -0.6167 0.0045 25 7 2.2965 -1.0880 0.0064 26 1 2.0094 -2.0146 0.0115 27 1 -0.3633 0.0059 1.0276 28 1 -0.3633 0.8870 -0.5191 29 1 -0.3633 -0.8930 -0.5087 30 1 5.5740 1.1537 0.5101 31 1 4.4698 2.5498 0.5023 32 1 6.4664 4.2979 -0.2961 33 1 6.8912 2.6718 0.2900 34 1 7.9531 3.5052 -0.8702 35 1 8.6495 2.9346 -2.4204 36 1 8.1753 1.6702 -3.6035 37 1 8.0735 3.2447 -5.4232 38 1 9.4667 3.8744 -4.4919 39 1 9.3271 8.2022 -5.1938 40 1 6.5502 5.1099 -2.3910 41 1 5.5646 4.8086 -3.8493 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033070860.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:45 Heat of formation + Delta-G solvation = 85.460411 kcal Electronic energy + Delta-G solvation = -23440.122648 eV Core-core repulsion = 19972.113458 eV Total energy + Delta-G solvation = -3468.009190 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.37176 -39.95212 -37.62394 -34.93791 -33.90646 -32.60281 -32.35256 -30.45142 -29.30743 -28.26809 -27.71321 -26.65850 -23.89983 -22.19528 -21.31726 -20.77195 -20.01078 -18.81483 -18.09947 -17.45409 -17.33083 -16.25292 -15.65379 -15.59140 -15.02696 -14.68596 -14.29744 -13.76094 -13.47982 -13.42740 -13.31793 -13.21857 -13.04574 -12.98193 -12.44966 -12.32004 -12.11294 -12.03834 -11.64210 -11.30408 -11.06762 -10.95404 -10.65135 -10.37902 -10.23727 -9.95755 -9.86900 -9.59829 -9.49499 -9.21502 -8.53008 -8.42564 -7.06050 -6.29214 -3.19027 1.35077 2.35986 2.53890 2.66446 3.14591 3.43882 3.56279 3.69734 3.70921 4.26579 4.47612 4.56458 4.61593 4.88145 4.98501 5.05559 5.08095 5.13942 5.22374 5.32585 5.35602 5.40259 5.44036 5.56034 5.59131 5.77253 5.91649 5.98830 6.01917 6.16827 6.27398 6.43125 6.53593 6.59700 6.77344 6.79203 6.82669 7.47342 7.73496 7.87566 8.21995 8.36429 9.05872 9.60449 10.27694 11.18238 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.034339 B = 0.003110 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.207243 B = 9000.074186 C = 9056.303647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.283 3.717 3 N -0.530 5.530 4 C 0.253 3.747 5 C -0.047 4.047 6 C 0.522 3.478 7 O -0.534 6.534 8 N -0.601 5.601 9 C 0.071 3.929 10 C 0.127 3.873 11 H 0.106 0.894 12 C -0.139 4.139 13 C 0.106 3.894 14 N -0.607 5.607 15 C -0.325 4.325 16 H 0.075 0.925 17 C -0.020 4.020 18 N -0.922 5.922 19 Si 1.064 2.936 20 H -0.293 1.293 21 H -0.286 1.286 22 H -0.299 1.299 23 C 0.129 3.871 24 N -0.305 5.305 25 N -0.483 5.483 26 H 0.439 0.561 27 H 0.091 0.909 28 H 0.099 0.901 29 H 0.082 0.918 30 H 0.117 0.883 31 H 0.123 0.877 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.034 0.966 38 H 0.064 0.936 39 H 0.262 0.738 40 H 0.034 0.966 41 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.016 -17.073 16.303 27.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.004 3.996 3 N -0.259 5.259 4 C -0.030 4.030 5 C -0.090 4.090 6 C 0.308 3.692 7 O -0.410 6.410 8 N -0.334 5.334 9 C -0.072 4.072 10 C 0.024 3.976 11 H 0.124 0.876 12 C -0.178 4.178 13 C -0.020 4.020 14 N -0.335 5.335 15 C -0.452 4.452 16 H 0.093 0.907 17 C -0.221 4.221 18 N -0.563 5.563 19 Si 0.896 3.104 20 H -0.221 1.221 21 H -0.213 1.213 22 H -0.227 1.227 23 C 0.002 3.998 24 N -0.134 5.134 25 N -0.201 5.201 26 H 0.284 0.716 27 H 0.110 0.890 28 H 0.118 0.882 29 H 0.101 0.899 30 H 0.135 0.865 31 H 0.141 0.859 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.051 0.949 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.052 0.948 41 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -12.806 -17.693 14.530 26.232 hybrid contribution -1.324 -0.100 1.279 1.844 sum -14.130 -17.793 15.810 27.680 Atomic orbital electron populations 1.20394 0.83616 1.05152 1.04444 1.24371 0.96617 0.82763 0.95823 1.70306 1.01279 1.29548 1.24772 1.23280 0.92657 0.89704 0.97351 1.19954 0.93540 0.98864 0.96607 1.20117 0.79880 0.78725 0.90431 1.90716 1.52591 1.51399 1.46322 1.47753 1.31288 1.46862 1.07453 1.21874 0.98160 0.98480 0.88659 1.22208 0.96341 0.97353 0.81737 0.87616 1.23151 0.95261 0.99418 1.00017 1.22063 0.97440 0.87172 0.95298 1.44770 1.25406 1.03855 1.59438 1.20043 1.25831 0.81902 1.17452 0.90699 1.25888 0.95072 1.02996 0.98108 1.70914 1.36082 1.04333 1.44990 0.83850 0.75574 0.74417 0.76513 1.22101 1.21292 1.22678 1.21573 0.91575 0.91456 0.95214 1.77965 0.96703 1.12219 1.26538 1.47921 1.04264 1.09977 1.57974 0.71562 0.89010 0.88233 0.89881 0.86474 0.85948 0.92032 0.91162 0.89974 0.90660 0.91232 0.94875 0.91846 0.92749 0.94782 0.95173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.37 10.51 36.01 0.38 0.00 16 2 C 0.28 2.85 8.24 -155.70 -1.28 1.56 16 3 N -0.53 -7.23 11.19 -8.16 -0.09 -7.32 16 4 C 0.25 3.50 6.63 -156.86 -1.04 2.46 16 5 C -0.05 -0.55 4.88 -29.04 -0.14 -0.69 16 6 C 0.52 8.02 7.67 -10.98 -0.08 7.94 16 7 O -0.53 -10.49 15.40 5.56 0.09 -10.41 16 8 N -0.60 -8.81 2.89 -171.83 -0.50 -9.31 16 9 C 0.07 0.77 9.13 59.85 0.55 1.32 16 10 C 0.13 2.27 3.35 -66.10 -0.22 2.05 16 11 H 0.11 2.07 6.99 -51.93 -0.36 1.70 16 12 C -0.14 -2.41 6.63 -24.46 -0.16 -2.57 16 13 C 0.11 2.33 4.70 -2.41 -0.01 2.31 16 14 N -0.61 -15.11 3.26 -169.93 -0.55 -15.66 16 15 C -0.32 -9.40 10.45 -15.06 -0.16 -9.55 16 16 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 17 C -0.02 -0.60 5.43 -17.43 -0.09 -0.70 16 18 N -0.92 -29.03 13.70 55.49 0.76 -28.27 16 19 Si 1.06 27.05 24.68 -169.99 -4.20 22.86 16 20 H -0.29 -6.98 6.61 56.52 0.37 -6.61 16 21 H -0.29 -6.99 6.20 56.52 0.35 -6.64 16 22 H -0.30 -7.69 7.11 56.52 0.40 -7.28 16 23 C 0.13 2.70 6.88 -3.06 -0.02 2.68 16 24 N -0.31 -4.12 12.80 32.42 0.41 -3.71 16 25 N -0.48 -4.72 7.45 32.62 0.24 -4.47 16 26 H 0.44 2.48 8.96 -182.33 -1.63 0.84 16 27 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.12 1.02 7.40 -51.92 -0.38 0.64 16 31 H 0.12 1.14 8.11 -51.93 -0.42 0.72 16 32 H 0.06 0.64 7.89 -51.93 -0.41 0.23 16 33 H 0.07 0.52 6.44 -51.93 -0.33 0.19 16 34 H 0.08 0.95 6.09 -51.93 -0.32 0.63 16 35 H 0.07 1.19 6.11 -51.93 -0.32 0.87 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.03 0.75 5.55 -51.93 -0.29 0.47 16 38 H 0.06 1.46 6.25 -51.93 -0.32 1.13 16 39 H 0.26 8.15 8.73 -40.82 -0.36 7.80 16 40 H 0.03 0.69 6.94 -51.93 -0.36 0.33 16 41 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 330.01 15.07 4.97 4.97 Total: -1.00 -38.87 330.01 -8.07 -46.95 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -6.92 Total: -2.46 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: -2.29 Total: 6.83 kcal Atomic # 7 Polarization: -69.02 SS G_CDS: 0.28 Total: -68.74 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.09 Total: -10.41 kcal Atomic # 14 Polarization: 27.05 SS G_CDS: -4.20 Total: 22.86 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -38.87 -8.07 -46.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033070860.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.407 kcal (2) G-P(sol) polarization free energy of solvation -38.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds