Wall clock time and date at job start Tue Mar 31 2020 03:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30831 * 125.96085 * 2 1 4 4 C 1.33243 * 109.83061 * 180.12210 * 3 2 1 5 5 C 1.50692 * 125.52428 * 179.85461 * 4 3 2 6 6 C 1.50704 * 109.47015 * 269.71259 * 5 4 3 7 7 O 1.21279 * 120.00081 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99998 * 180.02562 * 6 5 4 9 9 C 1.46497 * 119.99938 * 0.02562 * 8 6 5 10 10 C 1.46498 * 120.00140 * 180.02562 * 8 6 5 11 11 H 1.09004 * 110.63933 * 358.31190 * 10 8 6 12 12 C 1.55161 * 110.87197 * 235.06285 * 10 8 6 13 13 C 1.55133 * 101.48397 * 205.89545 * 12 10 8 14 14 N 1.47421 * 104.72251 * 37.29996 * 13 12 10 15 15 C 1.36934 * 125.65030 * 155.81786 * 14 13 12 16 16 H 1.07996 * 119.99899 * 193.37640 * 15 14 13 17 17 C 1.38817 * 119.99852 * 13.37649 * 15 14 13 18 18 N 1.31616 * 119.99841 * 204.21004 * 17 15 14 19 19 Si 1.86799 * 120.00022 * 23.92761 * 17 15 14 20 20 H 1.48494 * 109.47449 * 270.28104 * 19 17 15 21 21 H 1.48501 * 109.46941 * 30.28093 * 19 17 15 22 22 H 1.48496 * 109.46798 * 150.27608 * 19 17 15 23 23 C 1.47023 * 108.70138 * 335.54938 * 14 13 12 24 24 N 1.30712 * 108.94282 * 359.58557 * 4 3 2 25 25 N 1.34425 * 125.96388 * 179.66409 * 2 1 3 26 26 H 0.97004 * 126.82103 * 0.02562 * 25 2 1 27 27 H 1.08997 * 109.47092 * 270.33125 * 1 2 3 28 28 H 1.09001 * 109.46849 * 30.33899 * 1 2 3 29 29 H 1.09004 * 109.46668 * 150.33221 * 1 2 3 30 30 H 1.09009 * 109.47022 * 149.71718 * 5 4 3 31 31 H 1.08998 * 109.47931 * 29.71424 * 5 4 3 32 32 H 1.09001 * 109.47244 * 269.99636 * 9 8 6 33 33 H 1.09001 * 109.47551 * 29.99821 * 9 8 6 34 34 H 1.09002 * 109.47646 * 150.00314 * 9 8 6 35 35 H 1.08997 * 111.00574 * 324.14045 * 12 10 8 36 36 H 1.09005 * 110.99995 * 87.95197 * 12 10 8 37 37 H 1.08999 * 110.49555 * 278.45206 * 13 12 10 38 38 H 1.09000 * 110.33859 * 156.06365 * 13 12 10 39 39 H 0.97006 * 119.99847 * 354.28405 * 18 17 15 40 40 H 1.09002 * 109.88564 * 120.70737 * 23 14 13 41 41 H 1.09004 * 109.88323 * 241.87205 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2754 1.0590 0.0000 4 6 3.5553 0.6888 -0.0027 5 6 4.7372 1.6237 -0.0067 6 6 5.1321 1.9281 -1.4288 7 8 4.5143 1.4348 -2.3485 8 7 6.1718 2.7485 -1.6786 9 6 6.9184 3.3439 -0.5676 10 6 6.5554 3.0448 -3.0611 11 1 5.9205 2.5013 -3.7609 12 6 8.0511 2.7108 -3.3035 13 6 8.3962 3.6699 -4.4729 14 7 7.6434 4.9032 -4.1805 15 6 7.9605 6.1573 -4.6297 16 1 7.4841 7.0233 -4.1945 17 6 8.8944 6.3155 -5.6445 18 7 9.5525 7.4492 -5.7623 19 14 9.2228 4.9165 -6.8380 20 1 10.3079 4.0548 -6.3042 21 1 7.9876 4.1096 -7.0067 22 1 9.6337 5.4731 -8.1520 23 6 6.4920 4.5628 -3.3319 24 7 3.6195 -0.6167 0.0045 25 7 2.2965 -1.0880 0.0064 26 1 2.0094 -2.0146 0.0115 27 1 -0.3633 0.0059 1.0276 28 1 -0.3633 0.8870 -0.5191 29 1 -0.3633 -0.8930 -0.5087 30 1 5.5740 1.1537 0.5101 31 1 4.4698 2.5498 0.5023 32 1 6.4664 4.2979 -0.2961 33 1 6.8912 2.6718 0.2900 34 1 7.9531 3.5052 -0.8702 35 1 8.6495 2.9346 -2.4204 36 1 8.1753 1.6702 -3.6035 37 1 8.0735 3.2447 -5.4232 38 1 9.4667 3.8744 -4.4919 39 1 9.3271 8.2022 -5.1938 40 1 6.5502 5.1099 -2.3910 41 1 5.5646 4.8086 -3.8493 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033070860.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:44 Heat of formation + Delta-G solvation = 55.671741 kcal Electronic energy + Delta-G solvation = -23441.414382 eV Core-core repulsion = 19972.113458 eV Total energy + Delta-G solvation = -3469.300924 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -43.19239 -41.20813 -39.20034 -36.37002 -34.80800 -34.31538 -33.37101 -31.76561 -30.74436 -29.57280 -28.58984 -27.77545 -25.79566 -23.28636 -22.62801 -22.13722 -21.27519 -20.03448 -19.53955 -18.89271 -18.52863 -17.51997 -16.95339 -16.61733 -16.39433 -15.99767 -15.45868 -15.35338 -15.20909 -14.64609 -14.41753 -14.33460 -13.91253 -13.65395 -13.61635 -13.51448 -13.26080 -13.03707 -13.02865 -12.92004 -12.75107 -12.47186 -12.36535 -11.74889 -11.44976 -11.33797 -11.26845 -11.12113 -10.91624 -10.67493 -10.46440 -9.70540 -9.18096 -8.62646 -5.46809 0.54145 1.39856 1.50945 1.53669 1.56081 1.69794 1.72712 2.09159 2.50449 2.98294 3.05783 3.36492 3.48569 3.56367 3.72759 3.79768 3.88974 4.11232 4.22683 4.32694 4.35567 4.38937 4.44860 4.67441 4.69597 4.74149 4.74834 4.83495 4.92702 4.98695 5.01397 5.04397 5.16148 5.22318 5.32304 5.47453 5.57913 6.10222 6.19756 6.33911 6.81067 7.05327 7.06361 7.44042 8.10279 8.84662 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.034339 B = 0.003110 C = 0.003091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.207243 B = 9000.074186 C = 9056.303647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.285 3.715 3 N -0.571 5.571 4 C 0.235 3.765 5 C -0.040 4.040 6 C 0.521 3.479 7 O -0.584 6.584 8 N -0.597 5.597 9 C 0.063 3.937 10 C 0.140 3.860 11 H 0.087 0.913 12 C -0.122 4.122 13 C 0.096 3.904 14 N -0.625 5.625 15 C -0.317 4.317 16 H 0.044 0.956 17 C -0.073 4.073 18 N -0.955 5.955 19 Si 1.104 2.896 20 H -0.264 1.264 21 H -0.274 1.274 22 H -0.305 1.305 23 C 0.129 3.871 24 N -0.335 5.335 25 N -0.475 5.475 26 H 0.455 0.545 27 H 0.115 0.885 28 H 0.094 0.906 29 H 0.110 0.890 30 H 0.150 0.850 31 H 0.145 0.855 32 H 0.066 0.934 33 H 0.113 0.887 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.032 0.968 38 H 0.055 0.945 39 H 0.249 0.751 40 H 0.042 0.958 41 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.549 -19.803 18.143 30.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.007 3.993 3 N -0.301 5.301 4 C -0.049 4.049 5 C -0.081 4.081 6 C 0.309 3.691 7 O -0.463 6.463 8 N -0.329 5.329 9 C -0.078 4.078 10 C 0.035 3.965 11 H 0.105 0.895 12 C -0.160 4.160 13 C -0.029 4.029 14 N -0.353 5.353 15 C -0.446 4.446 16 H 0.062 0.938 17 C -0.267 4.267 18 N -0.598 5.598 19 Si 0.930 3.070 20 H -0.190 1.190 21 H -0.200 1.200 22 H -0.233 1.233 23 C 0.003 3.997 24 N -0.165 5.165 25 N -0.195 5.195 26 H 0.304 0.696 27 H 0.133 0.867 28 H 0.113 0.887 29 H 0.129 0.871 30 H 0.168 0.832 31 H 0.163 0.837 32 H 0.084 0.916 33 H 0.131 0.869 34 H 0.097 0.903 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.050 0.950 38 H 0.073 0.927 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -13.353 -20.465 16.437 29.450 hybrid contribution -1.315 0.775 0.790 1.719 sum -14.668 -19.690 17.227 29.993 Atomic orbital electron populations 1.20643 0.80145 1.06275 1.06251 1.25231 0.98303 0.82039 0.93692 1.70303 1.01788 1.31432 1.26614 1.23674 0.93408 0.90141 0.97643 1.20055 0.94152 0.99951 0.93984 1.20781 0.78986 0.77713 0.91591 1.90692 1.54171 1.53316 1.48161 1.47765 1.31553 1.46733 1.06860 1.22183 0.97273 0.99719 0.88612 1.21784 0.96673 0.94315 0.83742 0.89450 1.23074 0.94542 0.99558 0.98852 1.22213 0.96555 0.86810 0.97300 1.44832 1.27329 1.03543 1.59620 1.19930 1.24779 0.83097 1.16746 0.93842 1.27077 0.95500 1.04513 0.99636 1.71020 1.37985 1.04951 1.45860 0.83337 0.76868 0.72575 0.74231 1.18995 1.20039 1.23316 1.21633 0.89411 0.94255 0.94444 1.77841 0.98792 1.12390 1.27465 1.47861 1.03268 1.10977 1.57375 0.69615 0.86666 0.88711 0.87102 0.83240 0.83695 0.91581 0.86897 0.90330 0.88622 0.88604 0.95008 0.92654 0.94151 0.93962 0.97128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.51 71.24 0.75 0.22 16 2 C 0.29 5.26 8.24 138.23 1.14 6.40 16 3 N -0.57 -14.92 11.19 -179.73 -2.01 -16.93 16 4 C 0.23 6.14 6.63 138.63 0.92 7.06 16 5 C -0.04 -0.81 4.88 29.10 0.14 -0.67 16 6 C 0.52 15.07 7.67 87.66 0.67 15.75 16 7 O -0.58 -22.69 15.40 -3.03 -0.05 -22.74 16 8 N -0.60 -16.13 2.89 -815.95 -2.35 -18.48 16 9 C 0.06 1.16 9.13 127.77 1.17 2.32 16 10 C 0.14 4.80 3.35 46.18 0.15 4.95 16 11 H 0.09 3.37 6.99 -2.38 -0.02 3.36 16 12 C -0.12 -3.86 6.63 32.07 0.21 -3.65 16 13 C 0.10 4.05 4.70 86.93 0.41 4.46 16 14 N -0.63 -31.07 3.26 -691.54 -2.26 -33.32 16 15 C -0.32 -18.74 10.45 84.04 0.88 -17.86 16 16 H 0.04 2.78 8.06 -2.91 -0.02 2.75 16 17 C -0.07 -4.41 5.43 84.86 0.46 -3.95 16 18 N -0.95 -61.67 13.70 21.65 0.30 -61.38 16 19 Si 1.10 54.52 24.68 68.60 1.69 56.21 16 20 H -0.26 -11.75 6.61 99.48 0.66 -11.09 16 21 H -0.27 -12.87 6.20 99.48 0.62 -12.26 16 22 H -0.30 -15.27 7.11 99.48 0.71 -14.56 16 23 C 0.13 5.39 6.88 86.73 0.60 5.99 16 24 N -0.34 -8.57 12.80 -51.34 -0.66 -9.23 16 25 N -0.47 -8.47 7.45 -50.70 -0.38 -8.85 16 26 H 0.46 4.26 8.96 -213.09 -1.91 2.35 16 27 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 28 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.11 0.18 8.14 -2.38 -0.02 0.16 16 30 H 0.15 2.00 7.40 -2.38 -0.02 1.98 16 31 H 0.15 2.25 8.11 -2.39 -0.02 2.24 16 32 H 0.07 1.18 7.89 -2.39 -0.02 1.16 16 33 H 0.11 1.12 6.44 -2.39 -0.02 1.11 16 34 H 0.08 1.54 6.09 -2.39 -0.01 1.52 16 35 H 0.10 2.67 6.11 -2.39 -0.01 2.66 16 36 H 0.10 2.61 8.14 -2.38 -0.02 2.59 16 37 H 0.03 1.38 5.55 -2.39 -0.01 1.37 16 38 H 0.06 2.43 6.25 -2.39 -0.01 2.42 16 39 H 0.25 16.15 8.73 -92.70 -0.81 15.34 16 40 H 0.04 1.70 6.94 -2.39 -0.02 1.68 16 41 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 Total: -1.00 -88.10 330.01 0.77 -87.33 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -1.02 Total: 6.36 kcal Atomic # 6 Polarization: 13.52 SS G_CDS: 7.50 Total: 21.02 kcal Atomic # 7 Polarization: -140.83 SS G_CDS: -7.36 Total: -148.18 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.05 Total: -22.74 kcal Atomic # 14 Polarization: 54.52 SS G_CDS: 1.69 Total: 56.21 kcal Total: -88.10 0.77 -87.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033070860.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.005 kcal (2) G-P(sol) polarization free energy of solvation -88.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds