Wall clock time and date at job start Tue Mar 31 2020 03:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 120.00201 * 2 1 4 4 H 1.48503 * 109.46902 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47418 * 119.99462 * 3 2 1 6 6 H 1.48501 * 109.47023 * 240.00019 * 3 2 1 7 7 C 1.38811 * 120.00167 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99926 * 139.28664 * 7 2 1 9 9 N 1.36940 * 119.99948 * 319.29592 * 7 2 1 10 10 C 1.50164 * 120.53765 * 352.83126 * 9 7 2 11 11 C 1.46238 * 107.53002 * 109.56644 * 10 9 7 12 12 C 1.52527 * 114.27438 * 58.41187 * 11 10 9 13 13 C 1.50121 * 105.41433 * 270.58765 * 12 11 10 14 14 C 1.54845 * 110.81445 * 97.68551 * 13 12 11 15 15 H 1.08995 * 109.36083 * 81.20003 * 14 13 12 16 16 N 1.46494 * 109.36055 * 200.92705 * 14 13 12 17 17 C 1.34774 * 120.00234 * 204.99948 * 16 14 13 18 18 O 1.21277 * 119.99903 * 0.02562 * 17 16 14 19 19 C 1.50700 * 120.00052 * 180.02562 * 17 16 14 20 20 N 1.46499 * 109.47235 * 179.97438 * 19 17 16 21 21 N 1.28593 * 124.62063 * 269.70140 * 20 19 17 22 22 C 1.31384 * 108.72138 * 179.82932 * 21 20 19 23 23 C 1.39670 * 105.89570 * 0.41039 * 22 21 20 24 24 N 1.28604 * 124.61693 * 89.99800 * 20 19 17 25 25 C 1.43430 * 120.53636 * 172.55929 * 9 7 2 26 26 H 0.96994 * 120.00432 * 173.66593 * 1 2 3 27 27 H 1.08996 * 109.84977 * 229.08106 * 10 9 7 28 28 H 1.09006 * 109.84441 * 350.06652 * 10 9 7 29 29 H 1.09004 * 108.52288 * 179.64729 * 11 10 9 30 30 H 1.08994 * 108.52899 * 297.32549 * 11 10 9 31 31 H 1.08998 * 110.25086 * 29.56499 * 12 11 10 32 32 H 1.09002 * 110.24549 * 151.47223 * 12 11 10 33 33 H 1.08995 * 109.20809 * 218.02611 * 13 12 11 34 34 H 1.09000 * 109.20983 * 337.38837 * 13 12 11 35 35 H 0.97007 * 120.00234 * 24.99895 * 16 14 13 36 36 H 1.09005 * 109.47443 * 299.99977 * 19 17 16 37 37 H 1.09005 * 109.47246 * 59.99925 * 19 17 16 38 38 H 1.08004 * 127.05431 * 180.16564 * 22 21 20 39 39 H 1.08007 * 127.05062 * 179.76981 * 23 22 21 40 40 H 1.09001 * 108.15893 * 33.29946 * 25 9 7 41 41 H 1.09000 * 108.16547 * 149.86905 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 -0.0006 5 1 3.1038 1.6965 1.2125 6 1 3.1039 1.6963 -1.2125 7 6 2.0102 -1.2021 0.0005 8 1 2.8942 -1.3155 -0.6095 9 7 1.5740 -2.2443 0.7744 10 6 0.4452 -2.0528 1.7460 11 6 -0.7127 -2.7781 1.2245 12 6 -0.4750 -4.2698 1.0131 13 6 0.0456 -4.3961 -0.3893 14 6 1.5913 -4.4892 -0.3961 15 1 1.8926 -5.5125 -0.1721 16 7 2.0946 -4.1134 -1.7195 17 6 3.2886 -4.5740 -2.1421 18 8 3.9462 -5.3000 -1.4269 19 6 3.8067 -4.1870 -3.5033 20 7 5.1137 -4.8109 -3.7240 21 7 6.2409 -4.2734 -3.4175 22 6 7.2063 -5.1017 -3.7461 23 6 6.5791 -6.2188 -4.3025 24 7 5.2902 -5.9685 -4.2556 25 6 2.1841 -3.5378 0.6659 26 1 -0.4850 -0.8348 -0.0927 27 1 0.7241 -2.4528 2.7209 28 1 0.2086 -0.9924 1.8341 29 1 -1.5413 -2.6549 1.9219 30 1 -0.9968 -2.3362 0.2695 31 1 0.2638 -4.6387 1.7245 32 1 -1.4098 -4.8198 1.1217 33 1 -0.3697 -5.2941 -0.8465 34 1 -0.2630 -3.5243 -0.9663 35 1 1.5685 -3.5331 -2.2917 36 1 3.1079 -4.5262 -4.2680 37 1 3.9079 -3.1030 -3.5588 38 1 8.2676 -4.9485 -3.6167 39 1 7.0558 -7.1065 -4.6912 40 1 3.2404 -3.3971 0.4369 41 1 2.1150 -4.0287 1.6366 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034233828.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:02 Heat of formation + Delta-G solvation = 113.560537 kcal Electronic energy + Delta-G solvation = -24446.062031 eV Core-core repulsion = 20979.271354 eV Total energy + Delta-G solvation = -3466.790677 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.47156 -39.69351 -38.05265 -34.61532 -33.68834 -33.37033 -32.34324 -31.26493 -30.27525 -28.18653 -26.03174 -24.30817 -23.01697 -22.82886 -21.96001 -20.67015 -19.98475 -19.37791 -17.60583 -17.47021 -17.11502 -15.77511 -15.66110 -15.58869 -15.03759 -14.61030 -14.55835 -14.25759 -13.73756 -13.67241 -13.45357 -12.78593 -12.50988 -12.36616 -12.21431 -11.87628 -11.58695 -11.13323 -10.93901 -10.72685 -10.62699 -10.47348 -10.25499 -10.24433 -10.08562 -10.02177 -9.86256 -9.78509 -9.51326 -9.17081 -8.85491 -8.21162 -7.02266 -6.22485 -3.07725 1.81730 2.22135 2.55009 2.71461 3.45512 3.47863 3.56465 3.71628 4.21055 4.56409 4.75780 4.84109 4.92316 5.09181 5.11201 5.13744 5.25203 5.34525 5.35541 5.62687 5.87059 5.91526 5.93578 6.03573 6.18786 6.20869 6.26554 6.30711 6.52650 6.60841 6.62588 6.65070 6.80020 6.84618 6.94367 7.18383 7.20276 7.72745 7.95007 8.38067 8.39119 8.47738 9.02067 9.80112 10.25061 11.07833 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.016202 B = 0.005004 C = 0.004089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.811082 B = 5593.675825 C = 6846.636306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C -0.014 4.014 3 Si 1.034 2.966 4 H -0.288 1.288 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.355 4.355 8 H 0.063 0.937 9 N -0.586 5.586 10 C 0.129 3.871 11 C -0.135 4.135 12 C -0.111 4.111 13 C -0.111 4.111 14 C 0.116 3.884 15 H 0.075 0.925 16 N -0.695 5.695 17 C 0.501 3.499 18 O -0.535 6.535 19 C 0.120 3.880 20 N -0.138 5.138 21 N -0.276 5.276 22 C -0.030 4.030 23 C -0.030 4.030 24 N -0.284 5.284 25 C 0.153 3.847 26 H 0.273 0.727 27 H 0.024 0.976 28 H 0.095 0.905 29 H 0.040 0.960 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.046 0.954 34 H 0.073 0.927 35 H 0.402 0.598 36 H 0.133 0.867 37 H 0.139 0.861 38 H 0.196 0.804 39 H 0.196 0.804 40 H 0.041 0.959 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.008 -9.724 -6.478 12.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.216 4.216 3 Si 0.864 3.136 4 H -0.214 1.214 5 H -0.223 1.223 6 H -0.222 1.222 7 C -0.482 4.482 8 H 0.081 0.919 9 N -0.308 5.308 10 C 0.005 3.995 11 C -0.175 4.175 12 C -0.148 4.148 13 C -0.149 4.149 14 C 0.008 3.992 15 H 0.093 0.907 16 N -0.345 5.345 17 C 0.284 3.716 18 O -0.412 6.412 19 C -0.004 4.004 20 N -0.038 5.038 21 N -0.117 5.117 22 C -0.213 4.213 23 C -0.213 4.213 24 N -0.125 5.125 25 C 0.023 3.977 26 H 0.086 0.914 27 H 0.042 0.958 28 H 0.113 0.887 29 H 0.059 0.941 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.091 0.909 35 H 0.237 0.763 36 H 0.151 0.849 37 H 0.156 0.844 38 H 0.213 0.787 39 H 0.213 0.787 40 H 0.059 0.941 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.060 -7.944 -5.669 10.228 hybrid contribution 0.859 -1.824 -0.632 2.112 sum 3.919 -9.768 -6.301 12.266 Atomic orbital electron populations 1.70878 1.07200 1.30597 1.45552 1.25384 0.95755 1.00570 0.99923 0.83975 0.75692 0.77485 0.76401 1.21358 1.22302 1.22198 1.19868 1.09264 0.92500 1.26587 0.91896 1.44351 1.38992 1.04957 1.42465 1.20598 0.86855 1.01597 0.90448 1.21096 0.99442 0.94495 1.02419 1.20942 0.99882 0.97517 0.96508 1.21667 0.93937 1.01238 0.98074 1.22844 0.93721 0.99455 0.83146 0.90687 1.45866 1.19298 1.50141 1.19236 1.20223 0.82336 0.81308 0.87759 1.90742 1.56823 1.37185 1.56458 1.21761 0.79493 1.00810 0.98369 1.47330 1.05967 1.09913 1.40584 1.74107 0.92125 1.26818 1.18620 1.24766 1.00241 0.92546 1.03737 1.24730 0.89036 1.01856 1.05675 1.74008 1.20798 1.01905 1.15772 1.20608 0.96220 0.86266 0.94636 0.91388 0.95811 0.88713 0.94137 0.90999 0.91760 0.92540 0.93558 0.90853 0.76329 0.84884 0.84360 0.78691 0.78729 0.94093 0.94368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.41 11.99 55.49 0.67 -23.75 16 2 C -0.01 -0.36 4.53 -17.43 -0.08 -0.44 16 3 Si 1.03 24.14 30.06 -169.99 -5.11 19.03 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.30 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.35 -9.07 9.46 -15.06 -0.14 -9.21 16 8 H 0.06 1.68 8.05 -52.48 -0.42 1.25 16 9 N -0.59 -13.43 2.62 -175.40 -0.46 -13.89 16 10 C 0.13 2.79 5.23 -5.21 -0.03 2.77 16 11 C -0.14 -2.53 4.96 -30.19 -0.15 -2.68 16 12 C -0.11 -1.76 5.76 -28.41 -0.16 -1.92 16 13 C -0.11 -1.78 5.23 -27.19 -0.14 -1.92 16 14 C 0.12 2.03 2.91 -66.22 -0.19 1.84 16 15 H 0.08 1.35 7.58 -51.93 -0.39 0.95 16 16 N -0.70 -11.23 5.08 -52.16 -0.27 -11.49 16 17 C 0.50 8.45 7.71 -10.99 -0.08 8.36 16 18 O -0.54 -11.24 16.09 5.56 0.09 -11.15 16 19 C 0.12 1.60 7.02 -5.19 -0.04 1.57 16 20 N -0.14 -2.15 3.44 -11.66 -0.04 -2.19 16 21 N -0.28 -4.44 12.05 30.68 0.37 -4.07 16 22 C -0.03 -0.38 12.20 -17.21 -0.21 -0.59 16 23 C -0.03 -0.37 12.20 -17.21 -0.21 -0.58 16 24 N -0.28 -4.29 12.05 30.67 0.37 -3.92 16 25 C 0.15 3.16 4.75 -4.93 -0.02 3.14 16 26 H 0.27 7.15 4.95 -40.82 -0.20 6.95 16 27 H 0.02 0.49 8.13 -51.93 -0.42 0.06 16 28 H 0.09 2.34 5.61 -51.93 -0.29 2.05 16 29 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 1.50 4.64 -51.93 -0.24 1.26 16 31 H 0.06 1.04 6.28 -51.93 -0.33 0.71 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 1.30 6.58 -51.93 -0.34 0.96 16 35 H 0.40 5.88 8.44 -40.82 -0.34 5.54 16 36 H 0.13 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.14 1.63 8.14 -51.93 -0.42 1.21 16 38 H 0.20 1.65 8.06 -52.48 -0.42 1.23 16 39 H 0.20 1.51 8.06 -52.48 -0.42 1.09 16 40 H 0.04 0.95 7.81 -51.93 -0.41 0.54 16 41 H 0.04 0.76 6.89 -51.93 -0.36 0.40 16 LS Contribution 328.42 15.07 4.95 4.95 Total: -1.00 -33.04 328.42 -6.39 -39.43 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -5.50 Total: 6.72 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -1.46 Total: 0.33 kcal Atomic # 7 Polarization: -59.96 SS G_CDS: 0.64 Total: -59.32 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.09 Total: -11.15 kcal Atomic # 14 Polarization: 24.14 SS G_CDS: -5.11 Total: 19.03 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.04 -6.39 -39.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034233828.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.994 kcal (2) G-P(sol) polarization free energy of solvation -33.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds