Wall clock time and date at job start Tue Mar 31 2020 03:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86801 * 120.00201 * 2 1 4 4 H 1.48503 * 109.46902 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47418 * 119.99462 * 3 2 1 6 6 H 1.48501 * 109.47023 * 240.00019 * 3 2 1 7 7 C 1.38811 * 120.00167 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99926 * 139.28664 * 7 2 1 9 9 N 1.36940 * 119.99948 * 319.29592 * 7 2 1 10 10 C 1.50164 * 120.53765 * 352.83126 * 9 7 2 11 11 C 1.46238 * 107.53002 * 109.56644 * 10 9 7 12 12 C 1.52527 * 114.27438 * 58.41187 * 11 10 9 13 13 C 1.50121 * 105.41433 * 270.58765 * 12 11 10 14 14 C 1.54845 * 110.81445 * 97.68551 * 13 12 11 15 15 H 1.08995 * 109.36083 * 81.20003 * 14 13 12 16 16 N 1.46494 * 109.36055 * 200.92705 * 14 13 12 17 17 C 1.34774 * 120.00234 * 204.99948 * 16 14 13 18 18 O 1.21277 * 119.99903 * 0.02562 * 17 16 14 19 19 C 1.50700 * 120.00052 * 180.02562 * 17 16 14 20 20 N 1.46499 * 109.47235 * 179.97438 * 19 17 16 21 21 N 1.28593 * 124.62063 * 269.70140 * 20 19 17 22 22 C 1.31384 * 108.72138 * 179.82932 * 21 20 19 23 23 C 1.39670 * 105.89570 * 0.41039 * 22 21 20 24 24 N 1.28604 * 124.61693 * 89.99800 * 20 19 17 25 25 C 1.43430 * 120.53636 * 172.55929 * 9 7 2 26 26 H 0.96994 * 120.00432 * 173.66593 * 1 2 3 27 27 H 1.08996 * 109.84977 * 229.08106 * 10 9 7 28 28 H 1.09006 * 109.84441 * 350.06652 * 10 9 7 29 29 H 1.09004 * 108.52288 * 179.64729 * 11 10 9 30 30 H 1.08994 * 108.52899 * 297.32549 * 11 10 9 31 31 H 1.08998 * 110.25086 * 29.56499 * 12 11 10 32 32 H 1.09002 * 110.24549 * 151.47223 * 12 11 10 33 33 H 1.08995 * 109.20809 * 218.02611 * 13 12 11 34 34 H 1.09000 * 109.20983 * 337.38837 * 13 12 11 35 35 H 0.97007 * 120.00234 * 24.99895 * 16 14 13 36 36 H 1.09005 * 109.47443 * 299.99977 * 19 17 16 37 37 H 1.09005 * 109.47246 * 59.99925 * 19 17 16 38 38 H 1.08004 * 127.05431 * 180.16564 * 22 21 20 39 39 H 1.08007 * 127.05062 * 179.76981 * 23 22 21 40 40 H 1.09001 * 108.15893 * 33.29946 * 25 9 7 41 41 H 1.09000 * 108.16547 * 149.86905 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 -0.0006 5 1 3.1038 1.6965 1.2125 6 1 3.1039 1.6963 -1.2125 7 6 2.0102 -1.2021 0.0005 8 1 2.8942 -1.3155 -0.6095 9 7 1.5740 -2.2443 0.7744 10 6 0.4452 -2.0528 1.7460 11 6 -0.7127 -2.7781 1.2245 12 6 -0.4750 -4.2698 1.0131 13 6 0.0456 -4.3961 -0.3893 14 6 1.5913 -4.4892 -0.3961 15 1 1.8926 -5.5125 -0.1721 16 7 2.0946 -4.1134 -1.7195 17 6 3.2886 -4.5740 -2.1421 18 8 3.9462 -5.3000 -1.4269 19 6 3.8067 -4.1870 -3.5033 20 7 5.1137 -4.8109 -3.7240 21 7 6.2409 -4.2734 -3.4175 22 6 7.2063 -5.1017 -3.7461 23 6 6.5791 -6.2188 -4.3025 24 7 5.2902 -5.9685 -4.2556 25 6 2.1841 -3.5378 0.6659 26 1 -0.4850 -0.8348 -0.0927 27 1 0.7241 -2.4528 2.7209 28 1 0.2086 -0.9924 1.8341 29 1 -1.5413 -2.6549 1.9219 30 1 -0.9968 -2.3362 0.2695 31 1 0.2638 -4.6387 1.7245 32 1 -1.4098 -4.8198 1.1217 33 1 -0.3697 -5.2941 -0.8465 34 1 -0.2630 -3.5243 -0.9663 35 1 1.5685 -3.5331 -2.2917 36 1 3.1079 -4.5262 -4.2680 37 1 3.9079 -3.1030 -3.5588 38 1 8.2676 -4.9485 -3.6167 39 1 7.0558 -7.1065 -4.6912 40 1 3.2404 -3.3971 0.4369 41 1 2.1150 -4.0287 1.6366 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034233828.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:02 Heat of formation + Delta-G solvation = 90.235580 kcal Electronic energy + Delta-G solvation = -24447.073477 eV Core-core repulsion = 20979.271354 eV Total energy + Delta-G solvation = -3467.802123 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.48941 -41.10705 -39.59661 -36.19054 -34.98204 -34.74240 -33.39466 -33.03252 -31.81499 -29.33324 -27.74712 -25.79390 -24.70886 -23.81254 -23.21703 -22.14733 -21.35417 -20.89866 -19.05022 -18.82887 -18.50402 -17.16892 -16.94755 -16.83609 -16.34041 -16.20995 -15.81745 -15.55451 -15.31100 -15.23495 -14.80523 -14.35431 -14.00095 -13.80909 -13.58954 -13.37073 -12.78445 -12.57779 -12.55347 -12.45459 -12.19067 -11.93762 -11.79521 -11.77302 -11.56546 -11.34978 -11.34692 -11.28369 -11.18661 -10.43035 -10.24933 -10.05248 -8.87763 -8.26390 -5.07112 0.75034 1.22712 1.40467 1.59368 1.62603 1.65843 1.84378 2.22033 2.66997 3.14387 3.29706 3.44414 3.52016 3.78488 3.93154 3.97642 4.01738 4.15176 4.21486 4.36166 4.40931 4.45227 4.57210 4.65536 4.71527 4.91247 5.04622 5.07938 5.10370 5.13748 5.27495 5.35370 5.37929 5.47886 5.52454 5.61778 5.65620 5.92326 6.42477 6.50840 7.07389 7.09775 7.37399 7.86839 8.32327 9.06547 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.016202 B = 0.005004 C = 0.004089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.811082 B = 5593.675825 C = 6846.636306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.051 4.051 3 Si 1.075 2.925 4 H -0.293 1.293 5 H -0.297 1.297 6 H -0.283 1.283 7 C -0.352 4.352 8 H 0.046 0.954 9 N -0.597 5.597 10 C 0.131 3.869 11 C -0.128 4.128 12 C -0.103 4.103 13 C -0.102 4.102 14 C 0.124 3.876 15 H 0.075 0.925 16 N -0.691 5.691 17 C 0.500 3.500 18 O -0.580 6.580 19 C 0.122 3.878 20 N -0.156 5.156 21 N -0.320 5.320 22 C -0.027 4.027 23 C -0.023 4.023 24 N -0.311 5.311 25 C 0.158 3.842 26 H 0.272 0.728 27 H 0.034 0.966 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.056 0.944 35 H 0.410 0.590 36 H 0.169 0.831 37 H 0.150 0.850 38 H 0.232 0.768 39 H 0.237 0.763 40 H 0.007 0.993 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.112 -11.065 -7.293 13.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.250 4.250 3 Si 0.903 3.097 4 H -0.220 1.220 5 H -0.225 1.225 6 H -0.210 1.210 7 C -0.480 4.480 8 H 0.064 0.936 9 N -0.320 5.320 10 C 0.008 3.992 11 C -0.167 4.167 12 C -0.141 4.141 13 C -0.140 4.140 14 C 0.016 3.984 15 H 0.093 0.907 16 N -0.341 5.341 17 C 0.285 3.715 18 O -0.460 6.460 19 C -0.002 4.002 20 N -0.055 5.055 21 N -0.160 5.160 22 C -0.210 4.210 23 C -0.206 4.206 24 N -0.151 5.151 25 C 0.029 3.971 26 H 0.085 0.915 27 H 0.052 0.948 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.074 0.926 35 H 0.246 0.754 36 H 0.186 0.814 37 H 0.167 0.833 38 H 0.248 0.752 39 H 0.253 0.747 40 H 0.025 0.975 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.143 -9.286 -6.500 11.762 hybrid contribution 0.937 -1.473 -0.333 1.777 sum 4.079 -10.759 -6.832 13.382 Atomic orbital electron populations 1.70906 1.07644 1.30781 1.47291 1.26136 0.95980 1.02550 1.00353 0.83375 0.74738 0.74925 0.76615 1.21955 1.22489 1.20953 1.19832 1.08273 0.93581 1.26324 0.93614 1.44371 1.39765 1.05384 1.42431 1.20545 0.87660 1.00198 0.90813 1.20933 0.98369 0.96063 1.01314 1.20935 1.01434 0.95496 0.96234 1.21588 0.92301 1.01785 0.98289 1.22572 0.94874 0.98124 0.82791 0.90712 1.45826 1.19407 1.50007 1.18835 1.20839 0.81727 0.80204 0.88743 1.90708 1.57959 1.39270 1.58096 1.21891 0.79890 1.01509 0.96865 1.47467 1.06141 1.10311 1.41628 1.74068 0.93185 1.28584 1.20205 1.25491 1.01421 0.91953 1.02090 1.25496 0.88161 1.02757 1.04212 1.73974 1.22466 1.02078 1.16586 1.20568 0.94299 0.86103 0.96160 0.91495 0.94770 0.91979 0.92613 0.93183 0.91736 0.89419 0.90720 0.92553 0.75357 0.81372 0.83267 0.75180 0.74723 0.97506 0.93655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.61 11.99 21.65 0.26 -50.35 16 2 C -0.05 -2.68 4.53 84.86 0.38 -2.30 16 3 Si 1.08 49.44 30.06 68.60 2.06 51.50 16 4 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 5 H -0.30 -13.63 7.11 99.48 0.71 -12.93 16 6 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 7 C -0.35 -18.27 9.46 84.03 0.80 -17.48 16 8 H 0.05 2.50 8.05 -2.91 -0.02 2.47 16 9 N -0.60 -27.62 2.62 -708.85 -1.86 -29.48 16 10 C 0.13 5.69 5.23 83.58 0.44 6.13 16 11 C -0.13 -4.63 4.96 28.36 0.14 -4.49 16 12 C -0.10 -3.03 5.76 29.51 0.17 -2.86 16 13 C -0.10 -3.05 5.23 30.30 0.16 -2.89 16 14 C 0.12 4.26 2.91 46.10 0.13 4.39 16 15 H 0.07 2.61 7.58 -2.39 -0.02 2.60 16 16 N -0.69 -22.08 5.08 -437.31 -2.22 -24.30 16 17 C 0.50 16.84 7.71 87.66 0.68 17.52 16 18 O -0.58 -24.68 16.09 -3.02 -0.05 -24.73 16 19 C 0.12 3.19 7.02 85.63 0.60 3.79 16 20 N -0.16 -4.77 3.44 -190.79 -0.66 -5.43 16 21 N -0.32 -10.12 12.05 -56.86 -0.69 -10.80 16 22 C -0.03 -0.62 12.20 85.11 1.04 0.42 16 23 C -0.02 -0.51 12.20 85.11 1.04 0.53 16 24 N -0.31 -8.98 12.05 -56.86 -0.69 -9.67 16 25 C 0.16 6.57 4.75 87.43 0.41 6.99 16 26 H 0.27 14.46 4.95 -92.71 -0.46 14.00 16 27 H 0.03 1.38 8.13 -2.39 -0.02 1.36 16 28 H 0.06 3.12 5.61 -2.38 -0.01 3.11 16 29 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 30 H 0.05 2.06 4.64 -2.39 -0.01 2.05 16 31 H 0.06 1.92 6.28 -2.39 -0.02 1.90 16 32 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.06 1.92 6.58 -2.39 -0.02 1.91 16 35 H 0.41 11.79 8.44 -92.70 -0.78 11.00 16 36 H 0.17 3.03 8.14 -2.38 -0.02 3.01 16 37 H 0.15 3.48 8.14 -2.38 -0.02 3.46 16 38 H 0.23 3.26 8.06 -2.91 -0.02 3.24 16 39 H 0.24 2.82 8.06 -2.91 -0.02 2.79 16 40 H 0.01 0.32 7.81 -2.39 -0.02 0.30 16 41 H 0.05 1.79 6.89 -2.39 -0.02 1.77 16 Total: -1.00 -73.12 328.42 2.74 -70.38 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: 0.58 Total: 23.11 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: 5.99 Total: 9.76 kcal Atomic # 7 Polarization: -124.18 SS G_CDS: -5.85 Total: -130.02 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -0.05 Total: -24.73 kcal Atomic # 14 Polarization: 49.44 SS G_CDS: 2.06 Total: 51.50 kcal Total: -73.12 2.74 -70.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034233828.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.620 kcal (2) G-P(sol) polarization free energy of solvation -73.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds