Wall clock time and date at job start Tue Mar 31 2020 03:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00056 * 2 1 4 4 H 1.48494 * 109.47488 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47278 * 300.00082 * 3 2 1 6 6 H 1.48506 * 109.46820 * 59.99775 * 3 2 1 7 7 C 1.38811 * 120.00110 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00228 * 195.80999 * 7 2 1 9 9 N 1.36938 * 119.99982 * 15.80039 * 7 2 1 10 10 C 1.47608 * 118.64366 * 26.27095 * 9 7 2 11 11 C 1.53943 * 112.14205 * 138.14534 * 10 9 7 12 12 C 1.50881 * 110.09610 * 319.43114 * 11 10 9 13 13 C 1.52570 * 109.35911 * 91.88778 * 12 11 10 14 14 C 1.47095 * 114.32600 * 274.99213 * 13 12 11 15 15 H 1.08999 * 109.18265 * 302.62160 * 14 13 12 16 16 N 1.46506 * 109.32637 * 183.06175 * 14 13 12 17 17 C 1.34771 * 120.00165 * 154.13269 * 16 14 13 18 18 O 1.21291 * 119.99628 * 359.97438 * 17 16 14 19 19 C 1.50697 * 120.00358 * 179.97438 * 17 16 14 20 20 N 1.46500 * 109.47205 * 179.97438 * 19 17 16 21 21 N 1.28595 * 124.61757 * 269.69684 * 20 19 17 22 22 C 1.31380 * 108.71730 * 179.82923 * 21 20 19 23 23 C 1.39667 * 105.89985 * 0.41841 * 22 21 20 24 24 N 1.28598 * 124.61824 * 90.00178 * 20 19 17 25 25 C 1.44578 * 118.64387 * 206.53364 * 9 7 2 26 26 H 0.97000 * 120.00244 * 0.02562 * 1 2 3 27 27 H 1.09001 * 108.94284 * 258.83314 * 10 9 7 28 28 H 1.09001 * 108.94320 * 17.45745 * 10 9 7 29 29 H 1.08998 * 109.36451 * 199.24390 * 11 10 9 30 30 H 1.08994 * 109.26776 * 79.56011 * 11 10 9 31 31 H 1.09000 * 109.49328 * 331.92607 * 12 11 10 32 32 H 1.09000 * 109.49188 * 211.85054 * 12 11 10 33 33 H 1.08996 * 108.51249 * 153.73249 * 13 12 11 34 34 H 1.09006 * 108.51267 * 36.24308 * 13 12 11 35 35 H 0.96998 * 119.99765 * 334.13105 * 16 14 13 36 36 H 1.09002 * 109.47063 * 300.00023 * 19 17 16 37 37 H 1.09002 * 109.47006 * 59.99666 * 19 17 16 38 38 H 1.08006 * 127.04877 * 180.16199 * 22 21 20 39 39 H 1.08004 * 127.05073 * 179.73162 * 23 22 21 40 40 H 1.09000 * 109.45186 * 30.48917 * 25 9 7 41 41 H 1.09001 * 109.44934 * 150.41231 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0596 -1.2200 0.2543 9 7 1.3644 -2.3655 -0.3240 10 6 0.1789 -2.2965 -1.2007 11 6 0.1670 -3.4226 -2.2502 12 6 1.5569 -3.6364 -2.7969 13 6 2.2646 -4.7089 -1.9743 14 6 2.9194 -4.2053 -0.7572 15 1 3.6371 -3.4319 -1.0306 16 7 3.6222 -5.3064 -0.0938 17 6 4.6834 -5.0496 0.6963 18 8 5.0569 -3.9069 0.8576 19 6 5.4061 -6.1820 1.3791 20 7 6.5141 -5.6458 2.1735 21 7 7.7115 -5.4765 1.7363 22 6 8.4469 -4.9773 2.7038 23 6 7.5976 -4.8548 3.8058 24 7 6.4230 -5.2856 3.4047 25 6 1.8684 -3.6101 0.2120 26 1 -0.4850 0.8400 -0.0004 27 1 -0.7193 -2.3741 -0.5880 28 1 0.1735 -1.3346 -1.7134 29 1 -0.5039 -3.1503 -3.0649 30 1 -0.1841 -4.3438 -1.7853 31 1 2.1182 -2.7039 -2.7383 32 1 1.4933 -3.9583 -3.8364 33 1 3.0185 -5.1848 -2.6014 34 1 1.5325 -5.4635 -1.6865 35 1 3.3237 -6.2202 -0.2232 36 1 4.7139 -6.7133 2.0324 37 1 5.7967 -6.8689 0.6284 38 1 9.4946 -4.7189 2.6577 39 1 7.8539 -4.4824 4.7867 40 1 2.3316 -3.4267 1.1815 41 1 1.0447 -4.3140 0.3311 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034233829.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:05 Heat of formation + Delta-G solvation = 104.492182 kcal Electronic energy + Delta-G solvation = -24096.488887 eV Core-core repulsion = 20629.304977 eV Total energy + Delta-G solvation = -3467.183910 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.51629 -39.78684 -37.74993 -34.67591 -33.76242 -33.26963 -32.38581 -30.99179 -30.36319 -28.15962 -25.96243 -24.31415 -23.23258 -22.87476 -21.98869 -20.44487 -20.12928 -19.19627 -17.68880 -17.53885 -16.61368 -15.95102 -15.69015 -15.61557 -14.98484 -14.62410 -14.44535 -14.28886 -13.71544 -13.60429 -13.19576 -12.71721 -12.61778 -12.45101 -12.14463 -11.63028 -11.57017 -11.06278 -10.94783 -10.79527 -10.77956 -10.55631 -10.28930 -10.17559 -10.13121 -10.06407 -9.74251 -9.65060 -9.59306 -9.22401 -8.92517 -8.32698 -6.64380 -5.74098 -3.17630 1.75007 2.16148 2.52053 2.63571 3.27948 3.41664 3.49762 3.55617 4.13849 4.53604 4.62977 4.69774 4.79758 5.06041 5.20314 5.32568 5.33735 5.42728 5.51710 5.70113 5.94665 5.99034 5.99621 6.10042 6.17640 6.25774 6.35348 6.55798 6.58084 6.59414 6.63256 6.71188 6.79940 6.90221 7.06304 7.44628 7.59775 7.72623 7.93272 8.30482 8.33803 8.52214 9.29015 9.93737 10.36952 11.33473 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.015356 B = 0.004720 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.012884 B = 5931.126364 C = 7275.888514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.005 3.995 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.255 4.255 8 H 0.069 0.931 9 N -0.584 5.584 10 C 0.176 3.824 11 C -0.143 4.143 12 C -0.101 4.101 13 C -0.111 4.111 14 C 0.115 3.885 15 H 0.088 0.912 16 N -0.716 5.716 17 C 0.494 3.506 18 O -0.508 6.508 19 C 0.122 3.878 20 N -0.142 5.142 21 N -0.283 5.283 22 C -0.027 4.027 23 C -0.027 4.027 24 N -0.278 5.278 25 C 0.158 3.842 26 H 0.252 0.748 27 H 0.025 0.975 28 H 0.075 0.925 29 H 0.053 0.947 30 H 0.045 0.955 31 H 0.077 0.923 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.054 0.946 35 H 0.394 0.606 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.197 0.803 39 H 0.197 0.803 40 H 0.048 0.952 41 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.109 -15.986 0.222 18.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.193 4.193 3 Si 0.728 3.272 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.385 4.385 8 H 0.087 0.913 9 N -0.304 5.304 10 C 0.051 3.949 11 C -0.182 4.182 12 C -0.139 4.139 13 C -0.150 4.150 14 C 0.009 3.991 15 H 0.106 0.894 16 N -0.368 5.368 17 C 0.276 3.724 18 O -0.382 6.382 19 C -0.003 4.003 20 N -0.042 5.042 21 N -0.124 5.124 22 C -0.210 4.210 23 C -0.210 4.210 24 N -0.119 5.119 25 C 0.028 3.972 26 H 0.062 0.938 27 H 0.043 0.957 28 H 0.094 0.906 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.095 0.905 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.227 0.773 36 H 0.153 0.847 37 H 0.151 0.849 38 H 0.214 0.786 39 H 0.214 0.786 40 H 0.066 0.934 41 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 8.179 -15.502 -0.417 17.532 hybrid contribution 0.988 0.828 0.462 1.369 sum 9.167 -14.674 0.045 17.302 Atomic orbital electron populations 1.70087 1.05170 1.25247 1.54537 1.25001 0.95246 0.98320 1.00730 0.86269 0.79670 0.84041 0.77197 1.20165 1.21574 1.21733 1.19342 0.92723 0.84777 1.41659 0.91343 1.43601 1.32095 1.01508 1.53232 1.21058 0.88356 0.95828 0.89617 1.22077 0.95871 1.00639 0.99650 1.20828 0.97100 0.99394 0.96572 1.20573 0.99251 0.98994 0.96133 1.21344 0.96050 0.87803 0.93927 0.89367 1.46049 1.30804 1.11001 1.48989 1.20330 0.81420 0.90159 0.80470 1.90862 1.65195 1.21720 1.60394 1.21727 0.86579 0.95889 0.96087 1.47300 1.06669 1.44208 1.05996 1.74013 0.92827 1.18009 1.27529 1.24748 1.01948 1.04340 0.89970 1.24770 0.88909 1.05178 1.02104 1.74065 1.25295 1.15174 0.97361 1.20901 0.93355 0.88582 0.94359 0.93817 0.95707 0.90623 0.92850 0.93668 0.90464 0.93314 0.93357 0.92726 0.77277 0.84715 0.84872 0.78649 0.78613 0.93389 0.94969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.53 11.00 55.49 0.61 -25.92 16 2 C 0.01 0.15 4.87 -17.43 -0.08 0.06 16 3 Si 0.90 22.70 29.58 -169.99 -5.03 17.67 16 4 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 7 C -0.26 -7.22 9.44 -15.06 -0.14 -7.36 16 8 H 0.07 2.03 7.88 -52.49 -0.41 1.62 16 9 N -0.58 -14.51 2.27 -172.09 -0.39 -14.90 16 10 C 0.18 4.13 4.66 -2.94 -0.01 4.12 16 11 C -0.14 -2.57 5.71 -27.30 -0.16 -2.73 16 12 C -0.10 -1.68 5.51 -28.02 -0.15 -1.83 16 13 C -0.11 -1.64 4.55 -29.79 -0.14 -1.78 16 14 C 0.11 2.00 2.34 -69.78 -0.16 1.83 16 15 H 0.09 1.90 7.56 -51.93 -0.39 1.51 16 16 N -0.72 -9.49 5.05 -55.62 -0.28 -9.77 16 17 C 0.49 7.54 7.86 -10.99 -0.09 7.46 16 18 O -0.51 -10.92 16.08 5.55 0.09 -10.83 16 19 C 0.12 1.32 7.02 -5.20 -0.04 1.28 16 20 N -0.14 -2.03 3.44 -11.66 -0.04 -2.07 16 21 N -0.28 -4.10 12.05 30.67 0.37 -3.73 16 22 C -0.03 -0.32 12.20 -17.21 -0.21 -0.53 16 23 C -0.03 -0.32 12.20 -17.21 -0.21 -0.53 16 24 N -0.28 -4.17 12.05 30.67 0.37 -3.80 16 25 C 0.16 3.34 5.24 -4.09 -0.02 3.32 16 26 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 27 H 0.02 0.63 8.03 -51.93 -0.42 0.22 16 28 H 0.08 1.99 6.33 -51.93 -0.33 1.66 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.04 0.75 7.32 -51.93 -0.38 0.37 16 31 H 0.08 1.53 7.48 -51.93 -0.39 1.14 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.72 7.36 -51.93 -0.38 0.34 16 35 H 0.39 3.44 8.58 -40.82 -0.35 3.09 16 36 H 0.14 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.13 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.20 1.51 8.06 -52.48 -0.42 1.08 16 39 H 0.20 1.59 8.06 -52.48 -0.42 1.17 16 40 H 0.05 1.14 7.98 -51.93 -0.41 0.72 16 41 H 0.03 0.63 8.07 -51.93 -0.42 0.21 16 LS Contribution 336.16 15.07 5.07 5.07 Total: -1.00 -36.76 336.16 -6.63 -43.39 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -5.98 Total: 1.59 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -1.41 Total: 3.31 kcal Atomic # 7 Polarization: -60.83 SS G_CDS: 0.64 Total: -60.19 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.09 Total: -10.83 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.03 Total: 17.67 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -36.76 -6.63 -43.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034233829.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.878 kcal (2) G-P(sol) polarization free energy of solvation -36.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.386 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds