Wall clock time and date at job start Tue Mar 31 2020 03:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00056 * 2 1 4 4 H 1.48494 * 109.47488 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47278 * 300.00082 * 3 2 1 6 6 H 1.48506 * 109.46820 * 59.99775 * 3 2 1 7 7 C 1.38811 * 120.00110 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00228 * 195.80999 * 7 2 1 9 9 N 1.36938 * 119.99982 * 15.80039 * 7 2 1 10 10 C 1.47608 * 118.64366 * 26.27095 * 9 7 2 11 11 C 1.53943 * 112.14205 * 138.14534 * 10 9 7 12 12 C 1.50881 * 110.09610 * 319.43114 * 11 10 9 13 13 C 1.52570 * 109.35911 * 91.88778 * 12 11 10 14 14 C 1.47095 * 114.32600 * 274.99213 * 13 12 11 15 15 H 1.08999 * 109.18265 * 302.62160 * 14 13 12 16 16 N 1.46506 * 109.32637 * 183.06175 * 14 13 12 17 17 C 1.34771 * 120.00165 * 154.13269 * 16 14 13 18 18 O 1.21291 * 119.99628 * 359.97438 * 17 16 14 19 19 C 1.50697 * 120.00358 * 179.97438 * 17 16 14 20 20 N 1.46500 * 109.47205 * 179.97438 * 19 17 16 21 21 N 1.28595 * 124.61757 * 269.69684 * 20 19 17 22 22 C 1.31380 * 108.71730 * 179.82923 * 21 20 19 23 23 C 1.39667 * 105.89985 * 0.41841 * 22 21 20 24 24 N 1.28598 * 124.61824 * 90.00178 * 20 19 17 25 25 C 1.44578 * 118.64387 * 206.53364 * 9 7 2 26 26 H 0.97000 * 120.00244 * 0.02562 * 1 2 3 27 27 H 1.09001 * 108.94284 * 258.83314 * 10 9 7 28 28 H 1.09001 * 108.94320 * 17.45745 * 10 9 7 29 29 H 1.08998 * 109.36451 * 199.24390 * 11 10 9 30 30 H 1.08994 * 109.26776 * 79.56011 * 11 10 9 31 31 H 1.09000 * 109.49328 * 331.92607 * 12 11 10 32 32 H 1.09000 * 109.49188 * 211.85054 * 12 11 10 33 33 H 1.08996 * 108.51249 * 153.73249 * 13 12 11 34 34 H 1.09006 * 108.51267 * 36.24308 * 13 12 11 35 35 H 0.96998 * 119.99765 * 334.13105 * 16 14 13 36 36 H 1.09002 * 109.47063 * 300.00023 * 19 17 16 37 37 H 1.09002 * 109.47006 * 59.99666 * 19 17 16 38 38 H 1.08006 * 127.04877 * 180.16199 * 22 21 20 39 39 H 1.08004 * 127.05073 * 179.73162 * 23 22 21 40 40 H 1.09000 * 109.45186 * 30.48917 * 25 9 7 41 41 H 1.09001 * 109.44934 * 150.41231 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0596 -1.2200 0.2543 9 7 1.3644 -2.3655 -0.3240 10 6 0.1789 -2.2965 -1.2007 11 6 0.1670 -3.4226 -2.2502 12 6 1.5569 -3.6364 -2.7969 13 6 2.2646 -4.7089 -1.9743 14 6 2.9194 -4.2053 -0.7572 15 1 3.6371 -3.4319 -1.0306 16 7 3.6222 -5.3064 -0.0938 17 6 4.6834 -5.0496 0.6963 18 8 5.0569 -3.9069 0.8576 19 6 5.4061 -6.1820 1.3791 20 7 6.5141 -5.6458 2.1735 21 7 7.7115 -5.4765 1.7363 22 6 8.4469 -4.9773 2.7038 23 6 7.5976 -4.8548 3.8058 24 7 6.4230 -5.2856 3.4047 25 6 1.8684 -3.6101 0.2120 26 1 -0.4850 0.8400 -0.0004 27 1 -0.7193 -2.3741 -0.5880 28 1 0.1735 -1.3346 -1.7134 29 1 -0.5039 -3.1503 -3.0649 30 1 -0.1841 -4.3438 -1.7853 31 1 2.1182 -2.7039 -2.7383 32 1 1.4933 -3.9583 -3.8364 33 1 3.0185 -5.1848 -2.6014 34 1 1.5325 -5.4635 -1.6865 35 1 3.3237 -6.2202 -0.2232 36 1 4.7139 -6.7133 2.0324 37 1 5.7967 -6.8689 0.6284 38 1 9.4946 -4.7189 2.6577 39 1 7.8539 -4.4824 4.7867 40 1 2.3316 -3.4267 1.1815 41 1 1.0447 -4.3140 0.3311 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034233829.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:20:05 Heat of formation + Delta-G solvation = 76.228182 kcal Electronic energy + Delta-G solvation = -24097.714506 eV Core-core repulsion = 20629.304977 eV Total energy + Delta-G solvation = -3468.409529 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.46226 -41.11067 -39.28965 -36.31646 -34.92481 -34.69696 -33.37205 -32.92878 -31.85121 -29.20192 -27.86401 -25.88567 -24.97448 -23.80325 -23.15117 -21.73468 -21.48022 -20.86502 -18.81358 -18.65513 -18.53134 -17.38987 -16.84456 -16.72900 -16.50429 -16.22350 -15.71928 -15.46320 -15.29753 -15.01599 -14.69109 -14.31280 -14.12066 -13.85419 -13.45305 -13.12169 -13.04674 -12.87861 -12.56674 -12.49655 -12.36680 -12.08416 -11.78814 -11.68967 -11.49174 -11.41429 -11.31789 -11.31083 -11.15960 -10.57460 -10.25309 -10.19099 -8.68405 -7.92443 -5.37894 0.75406 1.30459 1.35628 1.37902 1.46284 1.49727 1.62815 2.15880 2.46501 3.19915 3.33238 3.52392 3.72838 3.90322 3.99701 4.03834 4.10431 4.19388 4.24533 4.39698 4.49249 4.58989 4.69681 4.74671 4.98337 5.02641 5.07964 5.09523 5.20694 5.24562 5.34591 5.35265 5.38417 5.58580 5.61498 5.69074 5.69738 5.81151 6.35942 6.49812 7.14111 7.21565 7.37916 7.90993 8.24347 9.11568 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.015356 B = 0.004720 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.012884 B = 5931.126364 C = 7275.888514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.040 4.040 3 Si 0.954 3.046 4 H -0.283 1.283 5 H -0.279 1.279 6 H -0.288 1.288 7 C -0.261 4.261 8 H 0.042 0.958 9 N -0.598 5.598 10 C 0.184 3.816 11 C -0.130 4.130 12 C -0.099 4.099 13 C -0.108 4.108 14 C 0.136 3.864 15 H 0.039 0.961 16 N -0.696 5.696 17 C 0.491 3.509 18 O -0.580 6.580 19 C 0.125 3.875 20 N -0.157 5.157 21 N -0.311 5.311 22 C -0.027 4.027 23 C -0.029 4.029 24 N -0.315 5.315 25 C 0.158 3.842 26 H 0.251 0.749 27 H -0.005 1.005 28 H 0.038 0.962 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.035 0.965 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.423 0.577 36 H 0.169 0.831 37 H 0.175 0.825 38 H 0.232 0.768 39 H 0.229 0.771 40 H 0.009 0.991 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.699 -18.794 -0.641 21.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.236 4.236 3 Si 0.783 3.217 4 H -0.208 1.208 5 H -0.205 1.205 6 H -0.215 1.215 7 C -0.392 4.392 8 H 0.060 0.940 9 N -0.320 5.320 10 C 0.060 3.940 11 C -0.169 4.169 12 C -0.138 4.138 13 C -0.146 4.146 14 C 0.029 3.971 15 H 0.058 0.942 16 N -0.350 5.350 17 C 0.276 3.724 18 O -0.459 6.459 19 C 0.001 3.999 20 N -0.057 5.057 21 N -0.152 5.152 22 C -0.210 4.210 23 C -0.212 4.212 24 N -0.156 5.156 25 C 0.030 3.970 26 H 0.060 0.940 27 H 0.014 0.986 28 H 0.057 0.943 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.054 0.946 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.261 0.739 36 H 0.187 0.813 37 H 0.192 0.808 38 H 0.248 0.752 39 H 0.245 0.755 40 H 0.028 0.972 41 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.751 -18.405 -1.300 20.421 hybrid contribution 0.853 1.696 0.805 2.062 sum 9.603 -16.709 -0.494 19.279 Atomic orbital electron populations 1.70205 1.06027 1.25639 1.55551 1.25591 0.96044 1.00807 1.01165 0.85408 0.78090 0.80792 0.77404 1.20793 1.20539 1.21466 1.19297 0.91798 0.86731 1.41368 0.94018 1.43737 1.32317 1.01774 1.54133 1.20874 0.86492 0.96651 0.89996 1.21938 0.97506 0.99079 0.98353 1.20818 0.95599 0.98323 0.99016 1.20518 1.00539 0.98883 0.94675 1.20713 0.93968 0.88144 0.94323 0.94238 1.45736 1.29898 1.11452 1.47867 1.21212 0.81198 0.90408 0.79617 1.90838 1.67224 1.25020 1.62776 1.22040 0.86540 0.94015 0.97261 1.47600 1.07156 1.44873 1.06033 1.73967 0.93448 1.19103 1.28645 1.25441 1.03386 1.02929 0.89213 1.25438 0.88178 1.04004 1.03567 1.74016 1.26829 1.16490 0.98223 1.20998 0.94635 0.87819 0.93565 0.93990 0.98641 0.94348 0.91070 0.91233 0.94628 0.89719 0.90318 0.89503 0.73887 0.81329 0.80755 0.75176 0.75458 0.97237 0.92706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.43 11.00 21.65 0.24 -56.19 16 2 C -0.04 -2.39 4.87 84.86 0.41 -1.98 16 3 Si 0.95 48.51 29.58 68.60 2.03 50.54 16 4 H -0.28 -14.49 7.11 99.48 0.71 -13.78 16 5 H -0.28 -13.66 7.11 99.48 0.71 -12.96 16 6 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 7 C -0.26 -15.61 9.44 84.03 0.79 -14.81 16 8 H 0.04 2.67 7.88 -2.91 -0.02 2.65 16 9 N -0.60 -30.91 2.27 -698.37 -1.59 -32.50 16 10 C 0.18 8.87 4.66 86.49 0.40 9.27 16 11 C -0.13 -4.41 5.71 30.22 0.17 -4.24 16 12 C -0.10 -3.08 5.51 29.76 0.16 -2.91 16 13 C -0.11 -2.83 4.55 28.62 0.13 -2.70 16 14 C 0.14 4.66 2.34 43.79 0.10 4.76 16 15 H 0.04 1.77 7.56 -2.39 -0.02 1.75 16 16 N -0.70 -17.13 5.05 -448.27 -2.26 -19.39 16 17 C 0.49 14.73 7.86 87.66 0.69 15.42 16 18 O -0.58 -26.02 16.08 -3.06 -0.05 -26.06 16 19 C 0.12 2.43 7.02 85.63 0.60 3.03 16 20 N -0.16 -4.34 3.44 -190.81 -0.66 -4.99 16 21 N -0.31 -8.68 12.05 -56.87 -0.69 -9.37 16 22 C -0.03 -0.60 12.20 85.11 1.04 0.44 16 23 C -0.03 -0.67 12.20 85.11 1.04 0.37 16 24 N -0.32 -9.24 12.05 -56.87 -0.69 -9.92 16 25 C 0.16 6.81 5.24 87.37 0.46 7.27 16 26 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 27 H 0.00 -0.24 8.03 -2.39 -0.02 -0.26 16 28 H 0.04 2.10 6.33 -2.39 -0.02 2.09 16 29 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.07 2.05 7.32 -2.39 -0.02 2.03 16 31 H 0.03 1.41 7.48 -2.39 -0.02 1.39 16 32 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.09 1.79 7.36 -2.38 -0.02 1.78 16 35 H 0.42 5.65 8.58 -92.71 -0.80 4.86 16 36 H 0.17 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.18 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.23 3.01 8.06 -2.91 -0.02 2.98 16 39 H 0.23 3.28 8.06 -2.91 -0.02 3.25 16 40 H 0.01 0.46 7.98 -2.39 -0.02 0.44 16 41 H 0.05 2.08 8.07 -2.39 -0.02 2.06 16 Total: -1.00 -88.37 336.16 2.59 -85.79 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: 0.24 Total: 8.19 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: 6.00 Total: 13.92 kcal Atomic # 7 Polarization: -126.73 SS G_CDS: -5.64 Total: -132.37 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -0.05 Total: -26.06 kcal Atomic # 14 Polarization: 48.51 SS G_CDS: 2.03 Total: 50.54 kcal Total: -88.37 2.59 -85.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034233829.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.014 kcal (2) G-P(sol) polarization free energy of solvation -88.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds