Wall clock time and date at job start Tue Mar 31 2020 03:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.33309 * 126.81718 * 2 1 4 4 N 1.28518 * 109.44433 * 179.97438 * 3 2 1 5 5 N 1.28719 * 110.63172 * 359.71265 * 4 3 2 6 6 H 0.97002 * 126.03187 * 180.30020 * 5 4 3 7 7 C 1.37008 * 126.81154 * 179.97438 * 2 1 3 8 8 C 1.47237 * 127.19038 * 0.02562 * 7 2 1 9 9 O 1.21617 * 120.00047 * 359.97438 * 8 7 2 10 10 N 1.34768 * 120.00122 * 180.02562 * 8 7 2 11 11 C 1.46507 * 120.00354 * 179.97438 * 10 8 7 12 12 H 1.09006 * 109.23982 * 324.65325 * 11 10 8 13 13 C 1.54842 * 109.35899 * 204.99812 * 11 10 8 14 14 C 1.50127 * 110.81178 * 200.92182 * 13 11 10 15 15 C 1.52524 * 105.41056 * 97.68840 * 14 13 11 16 16 C 1.46239 * 114.27600 * 270.58974 * 15 14 13 17 17 N 1.50172 * 107.53207 * 58.40879 * 16 15 14 18 18 C 1.36931 * 120.53516 * 109.56848 * 17 16 15 19 19 H 1.08004 * 119.99977 * 172.84823 * 18 17 16 20 20 C 1.38819 * 120.00300 * 352.84705 * 18 17 16 21 21 N 1.31616 * 119.99532 * 319.30052 * 20 18 17 22 22 Si 1.86802 * 120.00013 * 139.29464 * 20 18 17 23 23 H 1.48494 * 109.46784 * 180.02562 * 22 20 18 24 24 H 1.48497 * 109.47014 * 60.00199 * 22 20 18 25 25 H 1.48496 * 109.47313 * 300.00228 * 22 20 18 26 26 C 1.43432 * 118.92783 * 289.84141 * 17 16 15 27 27 H 1.09001 * 109.46436 * 270.02187 * 1 2 3 28 28 H 1.08993 * 109.46993 * 30.02065 * 1 2 3 29 29 H 1.08998 * 109.47475 * 150.02854 * 1 2 3 30 30 H 0.97006 * 120.00326 * 359.97438 * 10 8 7 31 31 H 1.09003 * 109.20752 * 80.58505 * 13 11 10 32 32 H 1.08999 * 109.20807 * 321.27058 * 13 11 10 33 33 H 1.08992 * 110.25071 * 338.71453 * 14 13 11 34 34 H 1.08998 * 110.36908 * 216.71606 * 14 13 11 35 35 H 1.08999 * 108.52632 * 149.35177 * 15 14 13 36 36 H 1.08994 * 108.40503 * 31.74138 * 15 14 13 37 37 H 1.09003 * 109.84536 * 298.90100 * 16 15 14 38 38 H 1.09005 * 109.90325 * 177.94904 * 16 15 14 39 39 H 0.97000 * 120.00306 * 353.65432 * 21 20 18 40 40 H 1.08998 * 108.16066 * 213.03328 * 26 17 16 41 41 H 1.09004 * 108.15966 * 329.60352 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3059 1.0672 0.0000 4 7 3.5325 0.6835 0.0005 5 7 3.6056 -0.6016 0.0070 6 1 4.4212 -1.1267 0.0128 7 6 2.3280 -1.0969 0.0005 8 6 1.9222 -2.5123 0.0006 9 8 0.7421 -2.8065 0.0007 10 7 2.8584 -3.4817 0.0016 11 6 2.4546 -4.8900 0.0023 12 1 1.5484 -5.0036 0.5974 13 6 3.5857 -5.7479 0.6207 14 6 3.4598 -7.1825 0.1964 15 6 4.4248 -7.3453 -0.9735 16 6 3.8371 -7.0601 -2.2818 17 7 3.3266 -5.6481 -2.2504 18 6 3.9512 -4.6663 -2.9722 19 1 3.5125 -3.6815 -3.0366 20 6 5.1482 -4.9367 -3.6211 21 7 6.0666 -5.6704 -3.0289 22 14 5.4555 -4.2593 -5.3346 23 1 6.7978 -4.6883 -5.8030 24 1 5.3939 -2.7760 -5.2989 25 1 4.4190 -4.7755 -6.2642 26 6 2.1779 -5.3434 -1.4474 27 1 -0.3632 0.0004 1.0277 28 1 -0.3633 0.8897 -0.5141 29 1 -0.3634 -0.8902 -0.5134 30 1 3.7996 -3.2470 0.0019 31 1 3.5271 -5.6890 1.7076 32 1 4.5501 -5.3601 0.2927 33 1 2.4395 -7.3930 -0.1240 34 1 3.7424 -7.8460 1.0136 35 1 4.7956 -8.3703 -0.9765 36 1 5.2690 -6.6733 -0.8192 37 1 3.0133 -7.7472 -2.4752 38 1 4.5945 -7.1626 -3.0591 39 1 5.9473 -5.9452 -2.1063 40 1 1.6162 -4.5524 -1.9443 41 1 1.5448 -6.2300 -1.4099 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034345539.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:05 Heat of formation + Delta-G solvation = 84.636920 kcal Electronic energy + Delta-G solvation = -24747.845404 eV Core-core repulsion = 21279.800504 eV Total energy + Delta-G solvation = -3468.044899 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.34512 -39.66049 -38.06335 -34.88504 -33.95897 -33.36473 -32.41420 -31.24791 -30.16866 -27.85966 -26.21801 -24.70923 -23.91984 -23.03153 -21.93668 -20.77972 -20.22018 -19.50167 -18.71511 -17.23639 -16.55014 -16.46070 -15.89182 -15.30120 -14.81215 -14.51864 -14.05841 -13.77221 -13.71101 -13.58743 -13.06300 -12.83806 -12.69202 -12.55412 -12.31631 -11.99496 -11.86338 -11.22103 -11.17299 -11.01671 -10.69380 -10.60134 -10.52013 -10.32724 -10.12813 -9.96029 -9.91584 -9.81781 -9.58164 -9.31101 -8.94465 -8.29183 -7.10198 -6.30338 -3.15877 0.92835 2.27190 2.45670 3.13064 3.26643 3.42324 3.51232 3.66067 4.27782 4.49305 4.63481 4.88452 5.01146 5.03570 5.07766 5.17780 5.26323 5.54181 5.65388 5.69732 5.79088 5.82690 5.85104 5.88341 6.11012 6.16191 6.22659 6.28511 6.44076 6.52511 6.55216 6.57303 6.72052 6.77263 6.81618 7.11988 7.14060 7.56781 7.86447 8.19917 8.27247 8.39751 8.93832 9.71908 10.17047 10.99645 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.014263 B = 0.005968 C = 0.004774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.631034 B = 4690.458058 C = 5864.257489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.052 3.948 3 N -0.274 5.274 4 N -0.050 5.050 5 N -0.372 5.372 6 H 0.452 0.548 7 C -0.061 4.061 8 C 0.591 3.409 9 O -0.524 6.524 10 N -0.696 5.696 11 C 0.114 3.886 12 H 0.081 0.919 13 C -0.112 4.112 14 C -0.110 4.110 15 C -0.136 4.136 16 C 0.129 3.871 17 N -0.586 5.586 18 C -0.358 4.358 19 H 0.062 0.938 20 C -0.013 4.013 21 N -0.898 5.898 22 Si 1.034 2.966 23 H -0.287 1.287 24 H -0.295 1.295 25 H -0.294 1.294 26 C 0.152 3.848 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.394 0.606 31 H 0.046 0.954 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.041 0.959 36 H 0.071 0.929 37 H 0.025 0.975 38 H 0.095 0.905 39 H 0.273 0.727 40 H 0.043 0.957 41 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.328 2.058 8.571 10.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.088 4.088 3 N -0.140 5.140 4 N -0.032 5.032 5 N -0.099 5.099 6 H 0.299 0.701 7 C -0.195 4.195 8 C 0.375 3.625 9 O -0.400 6.400 10 N -0.345 5.345 11 C 0.007 3.993 12 H 0.099 0.901 13 C -0.150 4.150 14 C -0.148 4.148 15 C -0.175 4.175 16 C 0.005 3.995 17 N -0.307 5.307 18 C -0.485 4.485 19 H 0.080 0.920 20 C -0.216 4.216 21 N -0.539 5.539 22 Si 0.864 3.136 23 H -0.213 1.213 24 H -0.223 1.223 25 H -0.222 1.222 26 C 0.022 3.978 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.113 0.887 30 H 0.228 0.772 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.059 0.941 36 H 0.089 0.911 37 H 0.043 0.957 38 H 0.113 0.887 39 H 0.086 0.914 40 H 0.061 0.939 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -4.415 3.192 7.249 9.068 hybrid contribution -0.323 -1.010 1.291 1.670 sum -4.738 2.181 8.540 10.007 Atomic orbital electron populations 1.20281 0.84957 1.04380 1.03497 1.22282 0.98558 0.87009 1.00947 1.74894 0.95267 1.26114 1.17772 1.78159 1.15938 0.92399 1.16694 1.45485 1.09060 1.06943 1.48394 0.70079 1.22262 0.84847 0.96922 1.15488 1.16660 0.86196 0.82041 0.77646 1.90789 1.16478 1.81847 1.50858 1.45930 1.08773 1.06913 1.72851 1.22943 0.97185 0.77957 1.01224 0.90115 1.21679 0.99234 0.95781 0.98313 1.20938 1.00556 0.95212 0.98106 1.21092 0.99330 1.00405 0.96649 1.20602 0.97831 0.84504 0.96559 1.44344 1.32172 1.04089 1.50102 1.19844 1.06278 0.94253 1.28139 0.92044 1.25401 0.91156 1.00606 1.04416 1.70892 1.30481 1.38379 1.14195 0.83984 0.75816 0.75512 0.78323 1.21257 1.22259 1.22184 1.20630 0.90273 0.98202 0.88741 0.90238 0.90504 0.88686 0.77237 0.93473 0.91030 0.91610 0.92477 0.94066 0.91082 0.95692 0.88743 0.91386 0.93920 0.94059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.89 9.93 36.01 0.36 -0.53 16 2 C 0.05 0.78 7.30 -82.40 -0.60 0.18 16 3 N -0.27 -4.35 12.35 33.51 0.41 -3.94 16 4 N -0.05 -0.76 13.35 60.35 0.81 0.04 16 5 N -0.37 -4.93 6.97 33.31 0.23 -4.70 16 6 H 0.45 4.65 8.32 -190.33 -1.58 3.07 16 7 C -0.06 -0.90 7.17 -82.33 -0.59 -1.49 16 8 C 0.59 9.48 7.62 -12.61 -0.10 9.38 16 9 O -0.52 -9.43 14.65 5.26 0.08 -9.36 16 10 N -0.70 -10.67 5.08 -53.28 -0.27 -10.94 16 11 C 0.11 1.84 2.91 -66.22 -0.19 1.65 16 12 H 0.08 1.28 7.57 -51.93 -0.39 0.89 16 13 C -0.11 -1.67 5.23 -27.19 -0.14 -1.82 16 14 C -0.11 -1.64 5.76 -28.40 -0.16 -1.81 16 15 C -0.14 -2.42 4.96 -30.19 -0.15 -2.57 16 16 C 0.13 2.68 5.22 -5.20 -0.03 2.66 16 17 N -0.59 -12.85 2.62 -175.40 -0.46 -13.31 16 18 C -0.36 -8.90 9.46 -15.06 -0.14 -9.05 16 19 H 0.06 1.61 8.05 -52.48 -0.42 1.18 16 20 C -0.01 -0.33 4.53 -17.43 -0.08 -0.41 16 21 N -0.90 -23.83 11.99 55.49 0.67 -23.17 16 22 Si 1.03 23.87 30.06 -169.99 -5.11 18.76 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.30 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 26 C 0.15 2.93 4.75 -4.93 -0.02 2.90 16 27 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.09 1.26 6.61 -51.93 -0.34 0.91 16 30 H 0.39 5.58 7.71 -40.82 -0.31 5.27 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 1.20 6.58 -51.93 -0.34 0.86 16 33 H 0.07 0.98 6.28 -51.93 -0.33 0.66 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 1.43 4.65 -51.93 -0.24 1.19 16 37 H 0.02 0.49 8.13 -51.93 -0.42 0.07 16 38 H 0.09 2.27 5.61 -51.93 -0.29 1.98 16 39 H 0.27 6.98 4.95 -40.82 -0.20 6.78 16 40 H 0.04 0.92 7.81 -51.93 -0.41 0.51 16 41 H 0.04 0.75 6.89 -51.93 -0.36 0.39 16 LS Contribution 323.07 15.07 4.87 4.87 Total: -1.00 -29.15 323.07 -7.18 -36.33 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -6.55 Total: 6.31 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -1.85 Total: -0.91 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: 1.39 Total: -56.01 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: 0.08 Total: -9.36 kcal Atomic # 14 Polarization: 23.87 SS G_CDS: -5.11 Total: 18.76 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.15 -7.18 -36.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034345539.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.972 kcal (2) G-P(sol) polarization free energy of solvation -29.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds