Wall clock time and date at job start Tue Mar 31 2020 03:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.33309 * 126.81718 * 2 1 4 4 N 1.28518 * 109.44433 * 179.97438 * 3 2 1 5 5 N 1.28719 * 110.63172 * 359.71265 * 4 3 2 6 6 H 0.97002 * 126.03187 * 180.30020 * 5 4 3 7 7 C 1.37008 * 126.81154 * 179.97438 * 2 1 3 8 8 C 1.47237 * 127.19038 * 0.02562 * 7 2 1 9 9 O 1.21617 * 120.00047 * 359.97438 * 8 7 2 10 10 N 1.34768 * 120.00122 * 180.02562 * 8 7 2 11 11 C 1.46507 * 120.00354 * 179.97438 * 10 8 7 12 12 H 1.09006 * 109.23982 * 324.65325 * 11 10 8 13 13 C 1.54842 * 109.35899 * 204.99812 * 11 10 8 14 14 C 1.50127 * 110.81178 * 200.92182 * 13 11 10 15 15 C 1.52524 * 105.41056 * 97.68840 * 14 13 11 16 16 C 1.46239 * 114.27600 * 270.58974 * 15 14 13 17 17 N 1.50172 * 107.53207 * 58.40879 * 16 15 14 18 18 C 1.36931 * 120.53516 * 109.56848 * 17 16 15 19 19 H 1.08004 * 119.99977 * 172.84823 * 18 17 16 20 20 C 1.38819 * 120.00300 * 352.84705 * 18 17 16 21 21 N 1.31616 * 119.99532 * 319.30052 * 20 18 17 22 22 Si 1.86802 * 120.00013 * 139.29464 * 20 18 17 23 23 H 1.48494 * 109.46784 * 180.02562 * 22 20 18 24 24 H 1.48497 * 109.47014 * 60.00199 * 22 20 18 25 25 H 1.48496 * 109.47313 * 300.00228 * 22 20 18 26 26 C 1.43432 * 118.92783 * 289.84141 * 17 16 15 27 27 H 1.09001 * 109.46436 * 270.02187 * 1 2 3 28 28 H 1.08993 * 109.46993 * 30.02065 * 1 2 3 29 29 H 1.08998 * 109.47475 * 150.02854 * 1 2 3 30 30 H 0.97006 * 120.00326 * 359.97438 * 10 8 7 31 31 H 1.09003 * 109.20752 * 80.58505 * 13 11 10 32 32 H 1.08999 * 109.20807 * 321.27058 * 13 11 10 33 33 H 1.08992 * 110.25071 * 338.71453 * 14 13 11 34 34 H 1.08998 * 110.36908 * 216.71606 * 14 13 11 35 35 H 1.08999 * 108.52632 * 149.35177 * 15 14 13 36 36 H 1.08994 * 108.40503 * 31.74138 * 15 14 13 37 37 H 1.09003 * 109.84536 * 298.90100 * 16 15 14 38 38 H 1.09005 * 109.90325 * 177.94904 * 16 15 14 39 39 H 0.97000 * 120.00306 * 353.65432 * 21 20 18 40 40 H 1.08998 * 108.16066 * 213.03328 * 26 17 16 41 41 H 1.09004 * 108.15966 * 329.60352 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3059 1.0672 0.0000 4 7 3.5325 0.6835 0.0005 5 7 3.6056 -0.6016 0.0070 6 1 4.4212 -1.1267 0.0128 7 6 2.3280 -1.0969 0.0005 8 6 1.9222 -2.5123 0.0006 9 8 0.7421 -2.8065 0.0007 10 7 2.8584 -3.4817 0.0016 11 6 2.4546 -4.8900 0.0023 12 1 1.5484 -5.0036 0.5974 13 6 3.5857 -5.7479 0.6207 14 6 3.4598 -7.1825 0.1964 15 6 4.4248 -7.3453 -0.9735 16 6 3.8371 -7.0601 -2.2818 17 7 3.3266 -5.6481 -2.2504 18 6 3.9512 -4.6663 -2.9722 19 1 3.5125 -3.6815 -3.0366 20 6 5.1482 -4.9367 -3.6211 21 7 6.0666 -5.6704 -3.0289 22 14 5.4555 -4.2593 -5.3346 23 1 6.7978 -4.6883 -5.8030 24 1 5.3939 -2.7760 -5.2989 25 1 4.4190 -4.7755 -6.2642 26 6 2.1779 -5.3434 -1.4474 27 1 -0.3632 0.0004 1.0277 28 1 -0.3633 0.8897 -0.5141 29 1 -0.3634 -0.8902 -0.5134 30 1 3.7996 -3.2470 0.0019 31 1 3.5271 -5.6890 1.7076 32 1 4.5501 -5.3601 0.2927 33 1 2.4395 -7.3930 -0.1240 34 1 3.7424 -7.8460 1.0136 35 1 4.7956 -8.3703 -0.9765 36 1 5.2690 -6.6733 -0.8192 37 1 3.0133 -7.7472 -2.4752 38 1 4.5945 -7.1626 -3.0591 39 1 5.9473 -5.9452 -2.1063 40 1 1.6162 -4.5524 -1.9443 41 1 1.5448 -6.2300 -1.4099 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034345539.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:03 Heat of formation + Delta-G solvation = 64.877186 kcal Electronic energy + Delta-G solvation = -24748.702250 eV Core-core repulsion = 21279.800504 eV Total energy + Delta-G solvation = -3468.901746 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -44.51034 -41.00725 -39.51962 -36.30734 -35.29007 -34.74028 -33.61623 -32.94438 -31.61377 -28.97466 -27.83520 -26.08857 -25.22910 -24.60158 -23.22568 -22.16790 -21.54395 -20.93445 -19.91709 -19.02947 -17.77451 -17.63802 -17.25766 -16.71772 -16.35944 -15.97787 -15.61725 -15.41622 -15.08146 -14.85938 -14.32978 -14.04343 -13.97301 -13.80729 -13.71858 -13.48181 -13.02419 -12.77724 -12.55478 -12.47531 -12.33426 -12.19323 -11.97906 -11.77213 -11.70187 -11.54487 -11.29297 -11.20140 -11.15728 -10.55035 -10.35870 -10.05195 -8.87628 -8.28224 -5.08759 -0.25744 1.08533 1.36435 1.55667 1.62329 1.80227 1.88131 2.02648 2.64101 3.11830 3.15863 3.44989 3.48340 3.71317 3.82056 3.91982 4.01188 4.22490 4.38991 4.44239 4.47545 4.59218 4.68196 4.73224 4.75648 4.90737 4.93132 5.08665 5.10914 5.14081 5.26733 5.30256 5.39172 5.48846 5.50178 5.56554 5.63477 5.90085 6.32020 6.48996 6.93649 7.08515 7.09132 7.85587 8.31700 9.04484 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.014263 B = 0.005968 C = 0.004774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.631034 B = 4690.458058 C = 5864.257489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.049 3.951 3 N -0.292 5.292 4 N -0.057 5.057 5 N -0.355 5.355 6 H 0.464 0.536 7 C -0.071 4.071 8 C 0.595 3.405 9 O -0.544 6.544 10 N -0.693 5.693 11 C 0.123 3.877 12 H 0.091 0.909 13 C -0.104 4.104 14 C -0.102 4.102 15 C -0.128 4.128 16 C 0.131 3.869 17 N -0.597 5.597 18 C -0.349 4.349 19 H 0.044 0.956 20 C -0.051 4.051 21 N -0.922 5.922 22 Si 1.071 2.929 23 H -0.294 1.294 24 H -0.288 1.288 25 H -0.295 1.295 26 C 0.154 3.846 27 H 0.096 0.904 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.400 0.600 31 H 0.075 0.925 32 H 0.051 0.949 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.053 0.947 36 H 0.047 0.953 37 H 0.037 0.963 38 H 0.059 0.941 39 H 0.273 0.727 40 H 0.015 0.985 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.953 1.765 9.916 11.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.092 4.092 3 N -0.158 5.158 4 N -0.038 5.038 5 N -0.085 5.085 6 H 0.313 0.687 7 C -0.206 4.206 8 C 0.379 3.621 9 O -0.421 6.421 10 N -0.342 5.342 11 C 0.016 3.984 12 H 0.109 0.891 13 C -0.142 4.142 14 C -0.140 4.140 15 C -0.167 4.167 16 C 0.008 3.992 17 N -0.319 5.319 18 C -0.478 4.478 19 H 0.062 0.938 20 C -0.251 4.251 21 N -0.565 5.565 22 Si 0.900 3.100 23 H -0.220 1.220 24 H -0.215 1.215 25 H -0.223 1.223 26 C 0.024 3.976 27 H 0.114 0.886 28 H 0.110 0.890 29 H 0.103 0.897 30 H 0.234 0.766 31 H 0.094 0.906 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.056 0.944 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.033 0.967 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.035 2.902 8.610 10.388 hybrid contribution -0.189 -0.932 0.858 1.280 sum -5.224 1.971 9.468 10.992 Atomic orbital electron populations 1.20357 0.83336 1.04575 1.04629 1.22753 0.99727 0.86705 0.99986 1.74896 0.95542 1.26638 1.18716 1.78113 1.15941 0.92964 1.16793 1.45470 1.09243 1.06553 1.47194 0.68669 1.22139 0.85452 0.96439 1.16557 1.16735 0.85918 0.82436 0.77019 1.90776 1.17274 1.82258 1.51799 1.45886 1.09063 1.06676 1.72553 1.22733 0.98379 0.78438 0.98886 0.89059 1.21610 0.97367 0.95371 0.99866 1.20928 0.99846 0.95680 0.97545 1.20935 0.99096 1.00427 0.96261 1.20538 0.97322 0.84063 0.97288 1.44361 1.32470 1.04010 1.51069 1.19795 1.05543 0.94158 1.28283 0.93799 1.26050 0.91517 1.01437 1.06114 1.70910 1.31116 1.39933 1.14548 0.83424 0.75088 0.75441 0.76027 1.22047 1.21503 1.22259 1.20651 0.89028 0.97900 0.90018 0.88572 0.88951 0.89737 0.76567 0.90613 0.92998 0.91177 0.89562 0.92787 0.93443 0.94448 0.92265 0.91442 0.96692 0.92825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.64 9.93 71.24 0.71 -0.93 16 2 C 0.05 1.41 7.30 42.05 0.31 1.71 16 3 N -0.29 -8.98 12.35 -47.88 -0.59 -9.57 16 4 N -0.06 -1.66 13.35 37.02 0.49 -1.16 16 5 N -0.36 -9.06 6.97 -48.52 -0.34 -9.40 16 6 H 0.46 9.07 8.32 -219.89 -1.83 7.24 16 7 C -0.07 -2.05 7.17 40.41 0.29 -1.76 16 8 C 0.60 18.48 7.62 86.61 0.66 19.14 16 9 O -0.54 -19.05 14.65 -4.08 -0.06 -19.11 16 10 N -0.69 -20.42 5.08 -440.75 -2.24 -22.66 16 11 C 0.12 3.73 2.91 46.09 0.13 3.86 16 12 H 0.09 2.66 7.57 -2.38 -0.02 2.64 16 13 C -0.10 -2.83 5.23 30.30 0.16 -2.67 16 14 C -0.10 -2.73 5.76 29.51 0.17 -2.56 16 15 C -0.13 -4.39 4.96 28.35 0.14 -4.25 16 16 C 0.13 5.41 5.22 83.58 0.44 5.84 16 17 N -0.60 -26.00 2.62 -708.84 -1.86 -27.86 16 18 C -0.35 -17.50 9.46 84.04 0.80 -16.70 16 19 H 0.04 2.33 8.05 -2.91 -0.02 2.30 16 20 C -0.05 -2.66 4.53 84.86 0.38 -2.28 16 21 N -0.92 -49.48 11.99 21.65 0.26 -49.22 16 22 Si 1.07 48.89 30.06 68.60 2.06 50.95 16 23 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 24 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 25 H -0.30 -13.36 7.11 99.48 0.71 -12.65 16 26 C 0.15 5.75 4.75 87.42 0.41 6.17 16 27 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.08 2.16 6.61 -2.39 -0.02 2.15 16 30 H 0.40 10.91 7.71 -92.70 -0.71 10.19 16 31 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.05 1.66 6.58 -2.39 -0.02 1.64 16 33 H 0.07 1.84 6.28 -2.39 -0.02 1.83 16 34 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.05 1.88 4.65 -2.39 -0.01 1.87 16 37 H 0.04 1.42 8.13 -2.39 -0.02 1.40 16 38 H 0.06 2.88 5.61 -2.38 -0.01 2.86 16 39 H 0.27 14.13 4.95 -92.71 -0.46 13.67 16 40 H 0.01 0.64 7.81 -2.39 -0.02 0.62 16 41 H 0.05 1.86 6.89 -2.39 -0.02 1.85 16 Total: -1.00 -62.16 323.07 1.18 -60.97 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: -1.15 Total: 21.47 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: 4.60 Total: 5.58 kcal Atomic # 7 Polarization: -115.59 SS G_CDS: -4.27 Total: -119.86 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.06 Total: -19.11 kcal Atomic # 14 Polarization: 48.89 SS G_CDS: 2.06 Total: 50.95 kcal Total: -62.16 1.18 -60.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034345539.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.852 kcal (2) G-P(sol) polarization free energy of solvation -62.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds