Wall clock time and date at job start Tue Mar 31 2020 03:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86793 * 120.00128 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47255 * 119.99698 * 3 2 1 6 6 H 1.48501 * 109.47312 * 239.99977 * 3 2 1 7 7 C 1.38813 * 119.99404 * 179.72599 * 2 1 3 8 8 H 1.07999 * 119.99831 * 150.03889 * 7 2 1 9 9 N 1.36938 * 120.00299 * 330.03042 * 7 2 1 10 10 C 1.44577 * 118.64297 * 325.32573 * 9 7 2 11 11 C 1.54863 * 109.60172 * 270.70515 * 10 9 7 12 12 C 1.47100 * 110.31930 * 288.73377 * 11 10 9 13 13 C 1.52567 * 114.32454 * 62.80381 * 12 11 10 14 14 C 1.50890 * 109.35544 * 274.98487 * 13 12 11 15 15 H 1.08999 * 109.36448 * 331.69730 * 14 13 12 16 16 N 1.46497 * 109.36192 * 211.95280 * 14 13 12 17 17 C 1.34785 * 119.99530 * 155.00211 * 16 14 13 18 18 O 1.21280 * 120.00120 * 359.97438 * 17 16 14 19 19 C 1.50701 * 119.99905 * 179.97438 * 17 16 14 20 20 C 1.50696 * 109.47288 * 179.97438 * 19 17 16 21 21 N 1.33234 * 125.53085 * 269.69477 * 20 19 17 22 22 C 1.30833 * 109.83098 * 179.84952 * 21 20 19 23 23 N 1.34426 * 108.07831 * 0.40899 * 22 21 20 24 24 H 0.96999 * 126.82672 * 179.71090 * 23 22 21 25 25 N 1.30717 * 125.52403 * 90.00239 * 20 19 17 26 26 C 1.47602 * 118.64183 * 145.05399 * 9 7 2 27 27 H 0.96996 * 120.00154 * 174.81503 * 1 2 3 28 28 H 1.09002 * 109.45064 * 30.74225 * 10 9 7 29 29 H 1.09004 * 109.45117 * 150.66218 * 10 9 7 30 30 H 1.09000 * 109.32729 * 48.99309 * 11 10 9 31 31 H 1.09000 * 109.33204 * 168.64899 * 11 10 9 32 32 H 1.08996 * 108.51106 * 184.05275 * 12 11 10 33 33 H 1.08998 * 108.50943 * 301.54535 * 12 11 10 34 34 H 1.08995 * 109.49690 * 34.94937 * 13 12 11 35 35 H 1.09000 * 109.48802 * 155.02134 * 13 12 11 36 36 H 0.96997 * 120.00745 * 334.99823 * 16 14 13 37 37 H 1.09001 * 109.47328 * 300.00538 * 19 17 16 38 38 H 1.09006 * 109.47244 * 59.99954 * 19 17 16 39 39 H 1.08001 * 125.96055 * 180.12254 * 22 21 20 40 40 H 1.08998 * 108.94943 * 258.57824 * 26 9 7 41 41 H 1.08997 * 108.94381 * 17.20812 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 -0.0006 5 1 3.1039 1.6964 1.2125 6 1 3.1040 1.6963 -1.2125 7 6 2.0102 -1.2022 0.0057 8 1 2.9819 -1.2670 -0.4611 9 7 1.4627 -2.3060 0.6034 10 6 0.6548 -2.1234 1.7884 11 6 1.5568 -2.1793 3.0459 12 6 2.0259 -3.5541 3.2775 13 6 2.9000 -4.1163 2.1605 14 6 2.0200 -4.6981 1.0816 15 1 1.0836 -5.0387 1.5236 16 7 2.7036 -5.8331 0.4568 17 6 1.9869 -6.8040 -0.1435 18 8 0.7761 -6.7382 -0.1660 19 6 2.6900 -7.9714 -0.7868 20 6 1.6693 -8.9072 -1.3812 21 7 1.1025 -9.9357 -0.7518 22 6 0.2609 -10.5370 -1.5529 23 7 0.2806 -9.8975 -2.7351 24 1 -0.2372 -10.1192 -3.5248 25 7 1.2006 -8.8449 -2.5999 26 6 1.7170 -3.6323 0.0078 27 1 -0.4850 -0.8366 -0.0759 28 1 0.1562 -1.1552 1.7421 29 1 -0.0934 -2.9143 1.8429 30 1 2.4161 -1.5241 2.9029 31 1 0.9879 -1.8440 3.9132 32 1 2.5962 -3.5734 4.2061 33 1 1.1566 -4.2010 3.3958 34 1 3.5112 -3.3179 1.7400 35 1 3.5465 -4.8964 2.5625 36 1 3.6720 -5.8860 0.4750 37 1 3.3522 -7.6085 -1.5729 38 1 3.2750 -8.5022 -0.0355 39 1 -0.3410 -11.3999 -1.3085 40 1 0.8396 -3.9385 -0.5620 41 1 2.5684 -3.5591 -0.6687 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034479837.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:42 Heat of formation + Delta-G solvation = 41.060647 kcal Electronic energy + Delta-G solvation = -23792.006239 eV Core-core repulsion = 20322.071731 eV Total energy + Delta-G solvation = -3469.934508 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.09035 -41.02774 -39.37406 -36.39994 -35.04717 -34.35312 -32.96244 -32.69461 -31.70266 -29.74599 -27.72088 -26.12033 -24.86332 -23.77863 -22.52765 -21.69634 -21.00312 -20.79448 -19.29796 -19.23242 -18.21526 -17.40975 -16.84847 -16.40112 -16.27003 -16.04802 -15.74188 -15.48214 -15.40929 -14.89556 -14.53703 -14.29148 -14.17238 -13.96223 -13.44768 -13.19446 -13.07089 -12.75439 -12.58706 -12.39202 -12.06852 -11.88729 -11.80958 -11.57556 -11.40107 -11.28751 -11.22552 -11.11055 -10.99279 -10.67066 -10.50076 -10.07816 -8.87420 -8.18069 -5.49254 0.63245 1.57548 1.59794 1.66296 1.68620 1.84013 1.85430 2.31909 2.67637 3.14801 3.18162 3.51435 3.66025 3.82090 3.88102 3.97878 4.16063 4.18423 4.27538 4.34688 4.43329 4.49786 4.55756 4.71371 4.82364 4.94741 5.00429 5.05045 5.21989 5.24102 5.27215 5.32656 5.36619 5.43985 5.55974 5.61542 5.92250 6.24582 6.35305 6.55825 7.07360 7.11511 7.26333 7.80681 8.18309 8.91832 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.023748 B = 0.003578 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.743741 B = 7823.483743 C = 8370.727405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.069 4.069 3 Si 1.111 2.889 4 H -0.294 1.294 5 H -0.274 1.274 6 H -0.276 1.276 7 C -0.361 4.361 8 H 0.046 0.954 9 N -0.597 5.597 10 C 0.142 3.858 11 C -0.129 4.129 12 C -0.100 4.100 13 C -0.104 4.104 14 C 0.151 3.849 15 H 0.055 0.945 16 N -0.705 5.705 17 C 0.516 3.484 18 O -0.586 6.586 19 C -0.042 4.042 20 C 0.232 3.768 21 N -0.573 5.573 22 C 0.274 3.726 23 N -0.477 5.477 24 H 0.457 0.543 25 N -0.345 5.345 26 C 0.146 3.854 27 H 0.249 0.751 28 H 0.044 0.956 29 H 0.016 0.984 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.048 0.952 34 H 0.064 0.936 35 H 0.098 0.902 36 H 0.421 0.579 37 H 0.142 0.858 38 H 0.155 0.845 39 H 0.274 0.726 40 H -0.026 1.026 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.663 -21.311 1.140 22.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.267 4.267 3 Si 0.935 3.065 4 H -0.220 1.220 5 H -0.199 1.199 6 H -0.202 1.202 7 C -0.491 4.491 8 H 0.064 0.936 9 N -0.320 5.320 10 C 0.016 3.984 11 C -0.168 4.168 12 C -0.138 4.138 13 C -0.142 4.142 14 C 0.045 3.955 15 H 0.074 0.926 16 N -0.358 5.358 17 C 0.303 3.697 18 O -0.465 6.465 19 C -0.084 4.084 20 C -0.052 4.052 21 N -0.302 5.302 22 C -0.024 4.024 23 N -0.196 5.196 24 H 0.305 0.695 25 N -0.176 5.176 26 C 0.020 3.980 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.034 0.966 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.116 0.884 36 H 0.259 0.741 37 H 0.160 0.840 38 H 0.173 0.827 39 H 0.289 0.711 40 H -0.008 1.008 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 6.956 -19.217 1.017 20.462 hybrid contribution -0.708 -1.758 -1.050 2.167 sum 6.247 -20.975 -0.033 21.886 Atomic orbital electron populations 1.70907 1.08057 1.28893 1.48718 1.27246 0.96165 1.05142 0.98123 0.82929 0.74039 0.71966 0.77554 1.22029 1.19949 1.20200 1.20100 0.99978 0.91115 1.37889 0.93605 1.43746 1.59896 1.01559 1.26800 1.20894 0.92345 0.98895 0.86289 1.21212 1.00101 0.97936 0.97580 1.20250 0.99214 0.95744 0.98586 1.21192 0.97803 1.00654 0.94513 1.21038 0.96076 0.85122 0.93272 0.92636 1.45898 1.11119 1.21544 1.57220 1.20885 0.87388 0.83818 0.77656 1.90725 1.16700 1.79095 1.60020 1.20014 0.94661 0.90873 1.02836 1.23704 0.98031 0.94790 0.88642 1.70330 1.14566 1.10801 1.34462 1.27045 0.95645 0.98308 0.81428 1.48019 1.33744 1.22486 1.15394 0.69458 1.77895 1.09556 1.09092 1.21021 1.21598 0.96432 0.85828 0.94124 0.94184 0.93811 0.96567 0.93144 0.91892 0.90076 0.93373 0.91751 0.88395 0.74130 0.84028 0.82697 0.71051 1.00783 0.93314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.93 12.16 21.65 0.26 -57.66 16 2 C -0.07 -3.98 4.68 84.86 0.40 -3.59 16 3 Si 1.11 51.10 30.01 68.60 2.06 53.16 16 4 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 5 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 6 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.36 -20.45 9.17 84.03 0.77 -19.68 16 8 H 0.05 2.60 7.97 -2.91 -0.02 2.57 16 9 N -0.60 -30.90 2.01 -697.69 -1.40 -32.30 16 10 C 0.14 7.01 4.89 87.37 0.43 7.43 16 11 C -0.13 -5.01 5.74 29.40 0.17 -4.85 16 12 C -0.10 -3.14 5.15 28.62 0.15 -2.99 16 13 C -0.10 -3.11 5.06 29.76 0.15 -2.96 16 14 C 0.15 5.36 2.27 44.75 0.10 5.46 16 15 H 0.06 2.27 6.75 -2.39 -0.02 2.25 16 16 N -0.70 -19.01 4.98 -443.70 -2.21 -21.22 16 17 C 0.52 15.82 7.78 87.66 0.68 16.50 16 18 O -0.59 -24.90 15.70 -3.03 -0.05 -24.94 16 19 C -0.04 -0.90 6.33 29.10 0.18 -0.71 16 20 C 0.23 6.26 6.63 138.63 0.92 7.18 16 21 N -0.57 -14.27 11.19 -191.81 -2.15 -16.41 16 22 C 0.27 4.39 13.13 180.36 2.37 6.76 16 23 N -0.48 -8.54 7.45 -60.49 -0.45 -8.99 16 24 H 0.46 4.45 8.96 -213.10 -1.91 2.54 16 25 N -0.35 -9.57 12.80 -51.34 -0.66 -10.23 16 26 C 0.15 6.77 5.86 86.61 0.51 7.28 16 27 H 0.25 16.27 7.42 -92.71 -0.69 15.58 16 28 H 0.04 2.48 5.28 -2.39 -0.01 2.47 16 29 H 0.02 0.79 8.07 -2.39 -0.02 0.77 16 30 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.05 1.53 7.36 -2.39 -0.02 1.51 16 34 H 0.06 2.20 7.49 -2.39 -0.02 2.19 16 35 H 0.10 2.13 7.94 -2.39 -0.02 2.12 16 36 H 0.42 7.52 8.54 -92.71 -0.79 6.73 16 37 H 0.14 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.16 2.16 8.14 -2.38 -0.02 2.14 16 39 H 0.27 0.88 8.06 -2.91 -0.02 0.86 16 40 H -0.03 -1.39 8.14 -2.39 -0.02 -1.41 16 41 H 0.05 2.22 7.86 -2.39 -0.02 2.20 16 Total: -1.00 -87.62 334.87 0.68 -86.94 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -1.55 Total: 15.82 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: 6.82 Total: 15.85 kcal Atomic # 7 Polarization: -140.22 SS G_CDS: -6.60 Total: -146.82 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.05 Total: -24.94 kcal Atomic # 14 Polarization: 51.10 SS G_CDS: 2.06 Total: 53.16 kcal Total: -87.62 0.68 -86.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034479837.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.999 kcal (2) G-P(sol) polarization free energy of solvation -87.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds