Wall clock time and date at job start Tue Mar 31 2020 03:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00485 * 2 1 4 4 H 1.48500 * 109.47013 * 89.99782 * 3 2 1 5 5 H 1.48495 * 109.47429 * 210.00065 * 3 2 1 6 6 H 1.48503 * 109.47030 * 330.00311 * 3 2 1 7 7 C 1.38815 * 119.99900 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99963 * 139.29301 * 7 2 1 9 9 N 1.36940 * 119.99854 * 319.29777 * 7 2 1 10 10 C 1.50164 * 120.53765 * 352.84170 * 9 7 2 11 11 C 1.46238 * 107.53002 * 109.56644 * 10 9 7 12 12 C 1.52527 * 114.27438 * 58.41187 * 11 10 9 13 13 C 1.50121 * 105.41433 * 270.58765 * 12 11 10 14 14 C 1.54845 * 110.81445 * 97.68551 * 13 12 11 15 15 H 1.09004 * 109.35716 * 81.33739 * 14 13 12 16 16 N 1.46499 * 109.35943 * 201.06155 * 14 13 12 17 17 C 1.34772 * 120.00034 * 204.99615 * 16 14 13 18 18 O 1.21282 * 119.99962 * 0.02562 * 17 16 14 19 19 C 1.50698 * 119.99960 * 180.02562 * 17 16 14 20 20 C 1.50699 * 109.47159 * 180.02562 * 19 17 16 21 21 N 1.33248 * 125.52675 * 90.00386 * 20 19 17 22 22 C 1.30826 * 109.82814 * 179.97438 * 21 20 19 23 23 N 1.34423 * 108.08169 * 359.97438 * 22 21 20 24 24 H 0.96998 * 126.82845 * 179.97438 * 23 22 21 25 25 N 1.30713 * 125.52996 * 269.69394 * 20 19 17 26 26 C 1.43430 * 120.53636 * 172.56973 * 9 7 2 27 27 H 0.96994 * 120.00074 * 173.65620 * 1 2 3 28 28 H 1.08996 * 109.84977 * 229.08106 * 10 9 7 29 29 H 1.09009 * 109.84534 * 349.99834 * 10 9 7 30 30 H 1.09004 * 108.52288 * 179.64729 * 11 10 9 31 31 H 1.08994 * 108.52899 * 297.32549 * 11 10 9 32 32 H 1.08998 * 110.25086 * 29.56499 * 12 11 10 33 33 H 1.09002 * 110.24549 * 151.47223 * 12 11 10 34 34 H 1.08995 * 109.20809 * 218.02611 * 13 12 11 35 35 H 1.09000 * 109.20983 * 337.38837 * 13 12 11 36 36 H 0.97001 * 119.99792 * 25.00188 * 16 14 13 37 37 H 1.09001 * 109.47702 * 300.00300 * 19 17 16 38 38 H 1.09005 * 109.47405 * 60.00455 * 19 17 16 39 39 H 1.08004 * 125.96071 * 180.02562 * 22 21 20 40 40 H 1.09001 * 108.15893 * 33.29946 * 26 9 7 41 41 H 1.09000 * 108.16547 * 149.86905 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 1.4001 5 1 3.5478 1.4400 -0.7000 6 1 1.4478 2.6527 -0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 2.8943 -1.3151 -0.6106 9 7 1.5739 -2.2450 0.7724 10 6 0.4449 -2.0544 1.7440 11 6 -0.7128 -2.7793 1.2217 12 6 -0.4750 -4.2708 1.0090 13 6 0.0459 -4.3959 -0.3934 14 6 1.5915 -4.4890 -0.4000 15 1 1.8927 -5.5130 -0.1792 16 7 2.0953 -4.1089 -1.7221 17 6 3.2894 -4.5681 -2.1457 18 8 3.9468 -5.2963 -1.4326 19 6 3.8079 -4.1767 -3.5055 20 6 5.1519 -4.8187 -3.7346 21 7 5.3549 -6.0140 -4.2874 22 6 6.6373 -6.2678 -4.3373 23 7 7.2910 -5.2194 -3.8078 24 1 8.2511 -5.1222 -3.7095 25 7 6.3079 -4.2909 -3.4285 26 6 2.1841 -3.5384 0.6629 27 1 -0.4850 -0.8348 -0.0928 28 1 0.7237 -2.4552 2.7185 29 1 0.2091 -0.9940 1.8339 30 1 -1.5415 -2.6568 1.9190 31 1 -0.9967 -2.3366 0.2670 32 1 0.2637 -4.6403 1.7202 33 1 -1.4098 -4.8210 1.1170 34 1 -0.3694 -5.2936 -0.8514 35 1 -0.2627 -3.5237 -0.9697 36 1 1.5693 -3.5268 -2.2925 37 1 3.1094 -4.5135 -4.2716 38 1 3.9091 -3.0926 -3.5576 39 1 7.0916 -7.1632 -4.7354 40 1 3.2405 -3.3975 0.4342 41 1 2.1148 -4.0301 1.6332 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034479838.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:48 Heat of formation + Delta-G solvation = 82.055897 kcal Electronic energy + Delta-G solvation = -24296.080598 eV Core-core repulsion = 20827.923777 eV Total energy + Delta-G solvation = -3468.156821 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.11507 -39.45152 -37.89767 -34.42231 -33.28321 -33.24088 -31.73685 -31.12691 -30.20699 -28.61942 -25.95212 -24.19644 -22.98781 -22.72681 -21.21053 -20.35443 -19.55809 -19.19758 -18.37047 -17.09106 -16.82470 -15.76206 -15.50705 -15.22612 -15.04734 -14.48021 -14.33152 -13.74325 -13.62356 -13.39312 -13.14025 -12.68317 -12.35534 -12.16935 -12.11473 -11.97390 -11.72269 -11.01581 -10.82520 -10.54012 -10.35695 -10.20011 -10.13225 -10.07502 -10.03149 -9.82739 -9.78856 -9.70759 -9.44399 -9.29184 -8.64920 -8.11245 -6.93017 -6.14280 -2.99354 1.58867 2.60664 2.81082 3.08003 3.55663 3.59416 3.72980 3.74816 4.11287 4.61916 4.63774 4.85905 5.17424 5.19018 5.26531 5.34664 5.44439 5.47408 5.56644 5.73990 5.97740 6.02641 6.05355 6.17699 6.27933 6.34616 6.37737 6.42560 6.63008 6.71814 6.72829 6.89117 6.94441 6.96277 7.14288 7.25926 7.27620 7.99256 8.04476 8.07236 8.55952 8.70009 9.10898 9.88538 10.33352 11.16152 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.016160 B = 0.004879 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.306667 B = 5738.015907 C = 6992.968442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.016 4.016 3 Si 1.037 2.963 4 H -0.295 1.295 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.350 4.350 8 H 0.064 0.936 9 N -0.587 5.587 10 C 0.129 3.871 11 C -0.135 4.135 12 C -0.110 4.110 13 C -0.111 4.111 14 C 0.116 3.884 15 H 0.074 0.926 16 N -0.702 5.702 17 C 0.522 3.478 18 O -0.547 6.547 19 C -0.053 4.053 20 C 0.256 3.744 21 N -0.536 5.536 22 C 0.257 3.743 23 N -0.486 5.486 24 H 0.440 0.560 25 N -0.300 5.300 26 C 0.154 3.846 27 H 0.273 0.727 28 H 0.023 0.977 29 H 0.094 0.906 30 H 0.039 0.961 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.045 0.955 35 H 0.072 0.928 36 H 0.401 0.599 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.221 0.779 40 H 0.041 0.959 41 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.484 -11.107 -7.152 14.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.218 4.218 3 Si 0.868 3.132 4 H -0.223 1.223 5 H -0.220 1.220 6 H -0.221 1.221 7 C -0.478 4.478 8 H 0.082 0.918 9 N -0.308 5.308 10 C 0.005 3.995 11 C -0.174 4.174 12 C -0.148 4.148 13 C -0.150 4.150 14 C 0.009 3.991 15 H 0.092 0.908 16 N -0.352 5.352 17 C 0.306 3.694 18 O -0.425 6.425 19 C -0.095 4.095 20 C -0.028 4.028 21 N -0.264 5.264 22 C -0.042 4.042 23 N -0.204 5.204 24 H 0.285 0.715 25 N -0.129 5.129 26 C 0.023 3.977 27 H 0.086 0.914 28 H 0.041 0.959 29 H 0.112 0.888 30 H 0.058 0.942 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.235 0.765 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.237 0.763 40 H 0.059 0.941 41 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 6.565 -9.451 -6.353 13.145 hybrid contribution 0.785 -1.579 -0.524 1.840 sum 7.350 -11.030 -6.877 14.932 Atomic orbital electron populations 1.70837 1.07178 1.30593 1.45953 1.25362 0.95789 1.00520 1.00141 0.83936 0.75388 0.77320 0.76601 1.22308 1.22005 1.22087 1.19935 1.09175 0.92350 1.26306 0.91769 1.44373 1.38941 1.05039 1.42494 1.20591 0.86904 1.01548 0.90438 1.21096 0.99391 0.94561 1.02379 1.20940 0.99796 0.97439 0.96656 1.21664 0.94244 1.01172 0.97874 1.22747 0.93485 0.99218 0.83689 0.90814 1.45897 1.19823 1.50369 1.19071 1.19957 0.81573 0.80440 0.87442 1.90677 1.57101 1.37534 1.57173 1.19935 0.89858 1.02244 0.97466 1.23350 0.94241 0.89963 0.95220 1.70342 1.15821 1.16479 1.23746 1.26014 0.88574 0.94174 0.95433 1.48085 1.10375 1.14211 1.47743 0.71478 1.78061 0.97272 1.14450 1.23141 1.20612 0.96250 0.86237 0.94609 0.91372 0.95900 0.88752 0.94249 0.90997 0.91809 0.92657 0.93632 0.90933 0.76521 0.86395 0.86328 0.76285 0.94090 0.94596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.08 11.99 55.49 0.67 -24.41 16 2 C -0.02 -0.43 4.53 -17.43 -0.08 -0.51 16 3 Si 1.04 24.73 30.06 -169.99 -5.11 19.62 16 4 H -0.30 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.35 -9.20 9.46 -15.06 -0.14 -9.35 16 8 H 0.06 1.77 8.05 -52.48 -0.42 1.35 16 9 N -0.59 -13.86 2.62 -175.40 -0.46 -14.32 16 10 C 0.13 2.88 5.22 -5.21 -0.03 2.85 16 11 C -0.14 -2.61 4.96 -30.19 -0.15 -2.76 16 12 C -0.11 -1.83 5.76 -28.41 -0.16 -2.00 16 13 C -0.11 -1.88 5.23 -27.19 -0.14 -2.02 16 14 C 0.12 2.14 2.91 -66.22 -0.19 1.95 16 15 H 0.07 1.39 7.58 -51.93 -0.39 0.99 16 16 N -0.70 -12.24 5.08 -52.15 -0.26 -12.50 16 17 C 0.52 9.41 7.63 -10.99 -0.08 9.33 16 18 O -0.55 -11.86 15.70 5.56 0.09 -11.77 16 19 C -0.05 -0.77 6.33 -29.04 -0.18 -0.95 16 20 C 0.26 4.08 6.63 -156.85 -1.04 3.04 16 21 N -0.54 -7.81 11.19 -11.98 -0.13 -7.95 16 22 C 0.26 2.61 13.13 -90.66 -1.19 1.42 16 23 N -0.49 -5.23 7.45 29.53 0.22 -5.02 16 24 H 0.44 2.88 8.96 -182.34 -1.63 1.24 16 25 N -0.30 -4.76 12.80 32.42 0.41 -4.35 16 26 C 0.15 3.28 4.74 -4.93 -0.02 3.25 16 27 H 0.27 7.34 4.95 -40.82 -0.20 7.14 16 28 H 0.02 0.48 8.13 -51.93 -0.42 0.06 16 29 H 0.09 2.39 5.61 -51.92 -0.29 2.10 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 1.55 4.65 -51.93 -0.24 1.31 16 32 H 0.06 1.07 6.28 -51.93 -0.33 0.74 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 1.36 6.58 -51.93 -0.34 1.01 16 36 H 0.40 6.49 8.44 -40.82 -0.34 6.15 16 37 H 0.12 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.12 1.61 8.14 -51.93 -0.42 1.19 16 39 H 0.22 0.95 8.06 -52.48 -0.42 0.53 16 40 H 0.04 0.98 7.80 -51.93 -0.41 0.58 16 41 H 0.04 0.73 6.89 -51.93 -0.36 0.38 16 LS Contribution 327.41 15.07 4.93 4.93 Total: -1.00 -34.85 327.41 -9.78 -44.63 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -6.71 Total: 6.87 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: -3.42 Total: 4.26 kcal Atomic # 7 Polarization: -68.99 SS G_CDS: 0.44 Total: -68.54 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.09 Total: -11.77 kcal Atomic # 14 Polarization: 24.73 SS G_CDS: -5.11 Total: 19.62 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.85 -9.78 -44.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034479838.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.682 kcal (2) G-P(sol) polarization free energy of solvation -34.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds