Wall clock time and date at job start Tue Mar 31 2020 03:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00485 * 2 1 4 4 H 1.48500 * 109.47013 * 89.99782 * 3 2 1 5 5 H 1.48495 * 109.47429 * 210.00065 * 3 2 1 6 6 H 1.48503 * 109.47030 * 330.00311 * 3 2 1 7 7 C 1.38815 * 119.99900 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99963 * 139.29301 * 7 2 1 9 9 N 1.36940 * 119.99854 * 319.29777 * 7 2 1 10 10 C 1.50164 * 120.53765 * 352.84170 * 9 7 2 11 11 C 1.46238 * 107.53002 * 109.56644 * 10 9 7 12 12 C 1.52527 * 114.27438 * 58.41187 * 11 10 9 13 13 C 1.50121 * 105.41433 * 270.58765 * 12 11 10 14 14 C 1.54845 * 110.81445 * 97.68551 * 13 12 11 15 15 H 1.09004 * 109.35716 * 81.33739 * 14 13 12 16 16 N 1.46499 * 109.35943 * 201.06155 * 14 13 12 17 17 C 1.34772 * 120.00034 * 204.99615 * 16 14 13 18 18 O 1.21282 * 119.99962 * 0.02562 * 17 16 14 19 19 C 1.50698 * 119.99960 * 180.02562 * 17 16 14 20 20 C 1.50699 * 109.47159 * 180.02562 * 19 17 16 21 21 N 1.33248 * 125.52675 * 90.00386 * 20 19 17 22 22 C 1.30826 * 109.82814 * 179.97438 * 21 20 19 23 23 N 1.34423 * 108.08169 * 359.97438 * 22 21 20 24 24 H 0.96998 * 126.82845 * 179.97438 * 23 22 21 25 25 N 1.30713 * 125.52996 * 269.69394 * 20 19 17 26 26 C 1.43430 * 120.53636 * 172.56973 * 9 7 2 27 27 H 0.96994 * 120.00074 * 173.65620 * 1 2 3 28 28 H 1.08996 * 109.84977 * 229.08106 * 10 9 7 29 29 H 1.09009 * 109.84534 * 349.99834 * 10 9 7 30 30 H 1.09004 * 108.52288 * 179.64729 * 11 10 9 31 31 H 1.08994 * 108.52899 * 297.32549 * 11 10 9 32 32 H 1.08998 * 110.25086 * 29.56499 * 12 11 10 33 33 H 1.09002 * 110.24549 * 151.47223 * 12 11 10 34 34 H 1.08995 * 109.20809 * 218.02611 * 13 12 11 35 35 H 1.09000 * 109.20983 * 337.38837 * 13 12 11 36 36 H 0.97001 * 119.99792 * 25.00188 * 16 14 13 37 37 H 1.09001 * 109.47702 * 300.00300 * 19 17 16 38 38 H 1.09005 * 109.47405 * 60.00455 * 19 17 16 39 39 H 1.08004 * 125.96071 * 180.02562 * 22 21 20 40 40 H 1.09001 * 108.15893 * 33.29946 * 26 9 7 41 41 H 1.09000 * 108.16547 * 149.86905 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 1.4001 5 1 3.5478 1.4400 -0.7000 6 1 1.4478 2.6527 -0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 2.8943 -1.3151 -0.6106 9 7 1.5739 -2.2450 0.7724 10 6 0.4449 -2.0544 1.7440 11 6 -0.7128 -2.7793 1.2217 12 6 -0.4750 -4.2708 1.0090 13 6 0.0459 -4.3959 -0.3934 14 6 1.5915 -4.4890 -0.4000 15 1 1.8927 -5.5130 -0.1792 16 7 2.0953 -4.1089 -1.7221 17 6 3.2894 -4.5681 -2.1457 18 8 3.9468 -5.2963 -1.4326 19 6 3.8079 -4.1767 -3.5055 20 6 5.1519 -4.8187 -3.7346 21 7 5.3549 -6.0140 -4.2874 22 6 6.6373 -6.2678 -4.3373 23 7 7.2910 -5.2194 -3.8078 24 1 8.2511 -5.1222 -3.7095 25 7 6.3079 -4.2909 -3.4285 26 6 2.1841 -3.5384 0.6629 27 1 -0.4850 -0.8348 -0.0928 28 1 0.7237 -2.4552 2.7185 29 1 0.2091 -0.9940 1.8339 30 1 -1.5415 -2.6568 1.9190 31 1 -0.9967 -2.3366 0.2670 32 1 0.2637 -4.6403 1.7202 33 1 -1.4098 -4.8210 1.1170 34 1 -0.3694 -5.2936 -0.8514 35 1 -0.2627 -3.5237 -0.9697 36 1 1.5693 -3.5268 -2.2925 37 1 3.1094 -4.5135 -4.2716 38 1 3.9091 -3.0926 -3.5576 39 1 7.0916 -7.1632 -4.7354 40 1 3.2405 -3.3975 0.4342 41 1 2.1148 -4.0301 1.6332 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034479838.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:47 Heat of formation + Delta-G solvation = 57.962200 kcal Electronic energy + Delta-G solvation = -24297.125379 eV Core-core repulsion = 20827.923777 eV Total energy + Delta-G solvation = -3469.201602 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.08311 -40.94787 -39.49798 -36.07909 -34.88571 -34.33458 -33.02692 -32.69549 -31.74166 -29.84722 -27.74348 -25.74874 -24.66000 -23.76085 -22.60283 -21.82417 -20.97600 -20.68350 -19.27732 -18.99066 -18.18976 -17.27624 -16.75081 -16.49249 -16.37406 -16.06850 -15.74024 -15.54163 -15.18451 -14.84310 -14.36778 -14.31432 -13.91015 -13.74747 -13.47582 -13.16851 -13.04968 -12.73819 -12.50255 -12.41619 -12.14156 -11.92397 -11.72932 -11.52459 -11.26539 -11.23619 -11.14877 -11.09492 -10.96056 -10.60645 -10.33770 -9.96330 -8.83580 -8.23770 -5.04287 0.64870 1.62306 1.63212 1.66410 1.73969 1.84120 1.85741 2.46483 2.69524 3.15860 3.16684 3.48227 3.66412 3.80276 3.89831 4.03445 4.15671 4.27757 4.39893 4.43772 4.46253 4.49747 4.53353 4.70416 4.75894 4.95310 5.08874 5.15097 5.18074 5.24097 5.29822 5.33760 5.41894 5.51330 5.64236 5.67203 5.95938 6.27504 6.52617 6.62306 7.08768 7.13150 7.28687 7.90018 8.34948 9.09147 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.016160 B = 0.004879 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.306667 B = 5738.015907 C = 6992.968442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.053 4.053 3 Si 1.079 2.921 4 H -0.295 1.295 5 H -0.286 1.286 6 H -0.296 1.296 7 C -0.348 4.348 8 H 0.045 0.955 9 N -0.598 5.598 10 C 0.132 3.868 11 C -0.128 4.128 12 C -0.103 4.103 13 C -0.102 4.102 14 C 0.124 3.876 15 H 0.075 0.925 16 N -0.699 5.699 17 C 0.520 3.480 18 O -0.586 6.586 19 C -0.048 4.048 20 C 0.237 3.763 21 N -0.572 5.572 22 C 0.275 3.725 23 N -0.476 5.476 24 H 0.457 0.543 25 N -0.346 5.346 26 C 0.158 3.842 27 H 0.272 0.728 28 H 0.035 0.965 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.053 0.947 36 H 0.407 0.593 37 H 0.147 0.853 38 H 0.124 0.876 39 H 0.278 0.722 40 H 0.006 0.994 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.598 -12.693 -7.821 16.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.252 4.252 3 Si 0.908 3.092 4 H -0.222 1.222 5 H -0.212 1.212 6 H -0.223 1.223 7 C -0.476 4.476 8 H 0.063 0.937 9 N -0.320 5.320 10 C 0.008 3.992 11 C -0.167 4.167 12 C -0.140 4.140 13 C -0.140 4.140 14 C 0.016 3.984 15 H 0.093 0.907 16 N -0.348 5.348 17 C 0.306 3.694 18 O -0.467 6.467 19 C -0.090 4.090 20 C -0.046 4.046 21 N -0.301 5.301 22 C -0.023 4.023 23 N -0.195 5.195 24 H 0.306 0.694 25 N -0.176 5.176 26 C 0.029 3.971 27 H 0.085 0.915 28 H 0.053 0.947 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.242 0.758 37 H 0.164 0.836 38 H 0.142 0.858 39 H 0.293 0.707 40 H 0.025 0.975 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 6.702 -11.045 -7.029 14.708 hybrid contribution 0.860 -1.160 -0.288 1.472 sum 7.562 -12.205 -7.317 16.114 Atomic orbital electron populations 1.70871 1.07613 1.30753 1.47640 1.26153 0.96015 1.02574 1.00494 0.83328 0.74701 0.74759 0.76460 1.22217 1.21208 1.22315 1.19874 1.08140 0.93500 1.26131 0.93725 1.44399 1.39735 1.05428 1.42448 1.20543 0.87650 1.00161 0.90827 1.20934 0.98381 0.96111 1.01249 1.20932 1.01404 0.95450 0.96249 1.21586 0.92582 1.01622 0.98212 1.22523 0.94694 0.98013 0.83189 0.90725 1.45889 1.19915 1.50243 1.18778 1.20523 0.81038 0.79484 0.88335 1.90644 1.58076 1.39386 1.58583 1.19944 0.90470 1.02581 0.95962 1.23499 0.94440 0.90802 0.95866 1.70318 1.18276 1.16346 1.25182 1.27081 0.87441 0.94784 0.92953 1.47997 1.10822 1.13593 1.47116 0.69392 1.77930 0.98271 1.16804 1.24632 1.20579 0.94316 0.86078 0.96154 0.91520 0.94706 0.92011 0.92607 0.93299 0.91682 0.89452 0.90827 0.92802 0.75786 0.83559 0.85806 0.70704 0.97519 0.93680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.97 11.99 21.65 0.26 -51.71 16 2 C -0.05 -2.88 4.53 84.86 0.38 -2.50 16 3 Si 1.08 50.73 30.06 68.60 2.06 52.79 16 4 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 5 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 7 C -0.35 -18.63 9.46 84.03 0.80 -17.83 16 8 H 0.04 2.53 8.05 -2.91 -0.02 2.51 16 9 N -0.60 -28.50 2.62 -708.84 -1.86 -30.35 16 10 C 0.13 5.86 5.22 83.58 0.44 6.29 16 11 C -0.13 -4.78 4.96 28.36 0.14 -4.64 16 12 C -0.10 -3.14 5.76 29.51 0.17 -2.97 16 13 C -0.10 -3.24 5.23 30.30 0.16 -3.08 16 14 C 0.12 4.48 2.91 46.10 0.13 4.61 16 15 H 0.07 2.73 7.58 -2.39 -0.02 2.71 16 16 N -0.70 -24.30 5.08 -437.29 -2.22 -26.52 16 17 C 0.52 18.87 7.63 87.66 0.67 19.54 16 18 O -0.59 -25.76 15.70 -3.04 -0.05 -25.81 16 19 C -0.05 -1.39 6.33 29.10 0.18 -1.20 16 20 C 0.24 7.48 6.63 138.63 0.92 8.40 16 21 N -0.57 -15.90 11.19 -191.80 -2.15 -18.04 16 22 C 0.28 4.89 13.13 180.36 2.37 7.26 16 23 N -0.48 -9.50 7.45 -60.49 -0.45 -9.95 16 24 H 0.46 5.15 8.96 -213.10 -1.91 3.24 16 25 N -0.35 -10.91 12.80 -51.33 -0.66 -11.57 16 26 C 0.16 6.80 4.74 87.43 0.41 7.22 16 27 H 0.27 14.85 4.95 -92.71 -0.46 14.39 16 28 H 0.03 1.44 8.13 -2.39 -0.02 1.42 16 29 H 0.06 3.17 5.61 -2.38 -0.01 3.16 16 30 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 31 H 0.05 2.09 4.65 -2.39 -0.01 2.08 16 32 H 0.06 2.00 6.28 -2.39 -0.02 1.99 16 33 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.05 1.95 6.58 -2.39 -0.02 1.94 16 36 H 0.41 13.13 8.44 -92.71 -0.78 12.35 16 37 H 0.15 3.28 8.14 -2.39 -0.02 3.26 16 38 H 0.12 3.41 8.14 -2.38 -0.02 3.39 16 39 H 0.28 1.15 8.06 -2.91 -0.02 1.13 16 40 H 0.01 0.32 7.80 -2.39 -0.02 0.30 16 41 H 0.04 1.82 6.89 -2.39 -0.02 1.81 16 Total: -1.00 -77.37 327.41 0.41 -76.96 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: -1.30 Total: 23.10 kcal Atomic # 6 Polarization: 14.33 SS G_CDS: 6.77 Total: 21.10 kcal Atomic # 7 Polarization: -141.07 SS G_CDS: -7.07 Total: -148.14 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -0.05 Total: -25.81 kcal Atomic # 14 Polarization: 50.73 SS G_CDS: 2.06 Total: 52.79 kcal Total: -77.37 0.41 -76.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034479838.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.922 kcal (2) G-P(sol) polarization free energy of solvation -77.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds