Wall clock time and date at job start Tue Mar 31 2020 03:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86806 * 120.00098 * 2 1 4 4 H 1.48502 * 109.47134 * 86.01714 * 3 2 1 5 5 H 1.48501 * 109.46979 * 206.01664 * 3 2 1 6 6 H 1.48499 * 109.47091 * 326.01905 * 3 2 1 7 7 C 1.38814 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00016 * 160.30039 * 7 2 1 9 9 N 1.36936 * 120.00241 * 340.30897 * 7 2 1 10 10 C 1.50174 * 120.53461 * 336.67596 * 9 7 2 11 11 C 1.46240 * 107.52874 * 109.56547 * 10 9 7 12 12 C 1.52522 * 114.27722 * 58.41259 * 11 10 9 13 13 C 1.50130 * 105.41205 * 270.58582 * 12 11 10 14 14 C 1.54842 * 110.81271 * 97.68372 * 13 12 11 15 15 H 1.09007 * 109.36042 * 81.33804 * 14 13 12 16 16 N 1.46503 * 109.36074 * 201.06212 * 14 13 12 17 17 C 1.34769 * 120.00028 * 205.00270 * 16 14 13 18 18 O 1.21282 * 120.00271 * 359.97438 * 17 16 14 19 19 C 1.50700 * 119.99989 * 180.02562 * 17 16 14 20 20 N 1.46508 * 109.47311 * 179.97438 * 19 17 16 21 21 C 1.34430 * 126.82275 * 124.70828 * 20 19 17 22 22 N 1.30827 * 108.07603 * 179.89558 * 21 20 19 23 23 C 1.33242 * 109.82579 * 0.37833 * 22 21 20 24 24 N 1.30707 * 108.95044 * 359.76536 * 23 22 21 25 25 C 1.43433 * 120.54110 * 156.39851 * 9 7 2 26 26 H 0.97001 * 119.99953 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.84576 * 229.07362 * 10 9 7 28 28 H 1.09002 * 109.84378 * 349.99375 * 10 9 7 29 29 H 1.09003 * 108.51761 * 179.65040 * 11 10 9 30 30 H 1.09001 * 108.52271 * 297.32038 * 11 10 9 31 31 H 1.08996 * 110.24856 * 29.55854 * 12 11 10 32 32 H 1.09005 * 110.24782 * 151.47506 * 12 11 10 33 33 H 1.09003 * 109.20914 * 218.02630 * 13 12 11 34 34 H 1.08993 * 109.20816 * 337.38875 * 13 12 11 35 35 H 0.97001 * 119.99439 * 25.00041 * 16 14 13 36 36 H 1.08999 * 109.46803 * 299.99829 * 19 17 16 37 37 H 1.08996 * 109.47379 * 59.99545 * 19 17 16 38 38 H 1.08002 * 125.96044 * 0.03648 * 21 20 19 39 39 H 1.08004 * 125.52406 * 179.80103 * 23 22 21 40 40 H 1.09005 * 108.15507 * 33.30360 * 25 9 7 41 41 H 1.08992 * 108.16167 * 149.87255 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4135 2.0951 1.3967 5 1 3.5874 1.4173 -0.6141 6 1 1.4923 2.6269 -0.7825 7 6 2.0102 -1.2022 0.0005 8 1 3.0429 -1.2297 -0.3147 9 7 1.3857 -2.3532 0.4006 10 6 0.1885 -2.2968 1.3055 11 6 -0.9798 -2.6824 0.5150 12 6 -0.8836 -4.0703 -0.1103 13 6 -0.2356 -3.8611 -1.4483 14 6 1.2831 -4.1541 -1.3760 15 1 1.4474 -5.2294 -1.4461 16 7 1.9603 -3.4857 -2.4900 17 6 3.1355 -3.9613 -2.9471 18 8 3.6328 -4.9423 -2.4359 19 6 3.8324 -3.2734 -4.0926 20 7 5.0806 -3.9769 -4.3982 21 6 5.4511 -4.4803 -5.5884 22 7 6.6311 -5.0277 -5.4480 23 6 7.0406 -4.9015 -4.1864 24 7 6.1251 -4.2648 -3.5046 25 6 1.8606 -3.6320 -0.0425 26 1 -0.4850 0.8401 -0.0004 27 1 0.3191 -2.9909 2.1357 28 1 0.0605 -1.2838 1.6870 29 1 -1.8587 -2.6529 1.1590 30 1 -1.1130 -1.9534 -0.2843 31 1 -0.2673 -4.7214 0.5097 32 1 -1.8784 -4.4984 -0.2333 33 1 -0.6953 -4.5282 -2.1775 34 1 -0.3863 -2.8283 -1.7621 35 1 1.5627 -2.7009 -2.8985 36 1 3.1854 -3.2829 -4.9698 37 1 4.0549 -2.2428 -3.8164 38 1 4.8762 -4.4380 -6.5017 39 1 7.9775 -5.2657 -3.7913 40 1 2.9442 -3.5745 -0.1466 41 1 1.6377 -4.3646 0.7331 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034514469.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:48 Heat of formation + Delta-G solvation = 71.523744 kcal Electronic energy + Delta-G solvation = -24420.934484 eV Core-core repulsion = 20952.320955 eV Total energy + Delta-G solvation = -3468.613529 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.97190 -40.85954 -39.27514 -35.87302 -34.94331 -34.76895 -32.88455 -32.15396 -31.69258 -29.00817 -27.84136 -25.62810 -24.78038 -23.29599 -22.85685 -21.87533 -21.02589 -20.74885 -18.57801 -18.36945 -18.22468 -17.00977 -16.78848 -16.67989 -16.08262 -16.04668 -15.60735 -15.46458 -15.10512 -14.92496 -14.58313 -14.05445 -13.85680 -13.64384 -13.42460 -13.23737 -13.17162 -12.74884 -12.67435 -12.35919 -12.29784 -11.90055 -11.80262 -11.31783 -11.23863 -11.12715 -10.98873 -10.91810 -10.75073 -10.48513 -10.42275 -9.96942 -8.59818 -7.79763 -5.19535 0.73707 1.33958 1.45477 1.52572 1.56860 1.62542 2.05208 2.34836 2.54306 3.33017 3.54371 3.60477 3.60750 3.77662 3.97782 4.08311 4.17248 4.19634 4.43617 4.44205 4.53402 4.62827 4.68929 4.84179 4.91449 5.07269 5.21966 5.25678 5.32627 5.35823 5.47459 5.51093 5.61159 5.69700 5.73817 5.80625 5.91782 6.23261 6.43533 6.66000 7.14508 7.21001 7.31169 7.92414 8.43859 9.23583 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.016270 B = 0.005013 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.584930 B = 5584.625608 C = 6718.194266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.028 4.028 3 Si 0.945 3.055 4 H -0.299 1.299 5 H -0.281 1.281 6 H -0.292 1.292 7 C -0.245 4.245 8 H 0.047 0.953 9 N -0.592 5.592 10 C 0.166 3.834 11 C -0.122 4.122 12 C -0.106 4.106 13 C -0.098 4.098 14 C 0.129 3.871 15 H 0.070 0.930 16 N -0.694 5.694 17 C 0.494 3.506 18 O -0.575 6.575 19 C 0.112 3.888 20 N -0.374 5.374 21 C 0.264 3.736 22 N -0.574 5.574 23 C 0.183 3.817 24 N -0.342 5.342 25 C 0.156 3.844 26 H 0.248 0.752 27 H 0.013 0.987 28 H 0.058 0.942 29 H 0.034 0.966 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.410 0.590 36 H 0.185 0.815 37 H 0.126 0.874 38 H 0.270 0.730 39 H 0.235 0.765 40 H 0.006 0.994 41 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.370 -6.209 -10.990 12.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.224 4.224 3 Si 0.776 3.224 4 H -0.227 1.227 5 H -0.206 1.206 6 H -0.218 1.218 7 C -0.375 4.375 8 H 0.065 0.935 9 N -0.313 5.313 10 C 0.043 3.957 11 C -0.160 4.160 12 C -0.144 4.144 13 C -0.136 4.136 14 C 0.021 3.979 15 H 0.088 0.912 16 N -0.344 5.344 17 C 0.279 3.721 18 O -0.454 6.454 19 C -0.013 4.013 20 N -0.165 5.165 21 C -0.032 4.032 22 N -0.302 5.302 23 C -0.120 4.120 24 N -0.169 5.169 25 C 0.026 3.974 26 H 0.058 0.942 27 H 0.032 0.968 28 H 0.076 0.924 29 H 0.053 0.947 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.246 0.754 36 H 0.202 0.798 37 H 0.144 0.856 38 H 0.286 0.714 39 H 0.251 0.749 40 H 0.024 0.976 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 0.795 -6.688 -10.072 12.116 hybrid contribution 0.216 1.503 0.223 1.535 sum 1.011 -5.185 -9.849 11.176 Atomic orbital electron populations 1.70078 1.05431 1.25098 1.54701 1.25264 0.95780 0.99602 1.01794 0.85619 0.78296 0.81682 0.76845 1.22663 1.20639 1.21829 1.19092 0.92814 0.86364 1.39214 0.93516 1.44261 1.34114 1.00876 1.52078 1.20110 0.86194 0.98926 0.90458 1.20823 0.97176 0.96722 1.01300 1.20950 1.00259 0.97014 0.96207 1.21542 0.92271 1.01682 0.98063 1.22421 0.92746 0.95434 0.87259 0.91206 1.45866 1.21673 1.31977 1.34879 1.20953 0.81391 0.84519 0.85190 1.90733 1.65372 1.28705 1.60606 1.21894 0.82195 0.96442 1.00788 1.50095 1.15148 1.43538 1.07723 1.27058 0.92907 0.91092 0.92149 1.70521 1.13044 1.26612 1.20064 1.26486 1.00212 0.97139 0.88121 1.78177 0.98526 1.22506 1.17708 1.20637 0.95179 0.87744 0.93822 0.94232 0.96843 0.92362 0.94735 0.90567 0.92469 0.90454 0.91439 0.92115 0.75437 0.79757 0.85601 0.71437 0.74886 0.97573 0.94292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.33 9.43 21.65 0.20 -46.12 16 2 C -0.03 -1.39 4.91 84.86 0.42 -0.97 16 3 Si 0.94 42.23 29.60 68.60 2.03 44.26 16 4 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 5 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 7 C -0.24 -12.37 9.62 84.03 0.81 -11.56 16 8 H 0.05 2.49 7.89 -2.91 -0.02 2.47 16 9 N -0.59 -27.31 2.61 -708.84 -1.85 -29.16 16 10 C 0.17 7.36 5.25 83.58 0.44 7.80 16 11 C -0.12 -4.70 5.02 28.35 0.14 -4.56 16 12 C -0.11 -3.36 5.76 29.51 0.17 -3.19 16 13 C -0.10 -3.04 5.23 30.30 0.16 -2.88 16 14 C 0.13 4.44 2.91 46.10 0.13 4.58 16 15 H 0.07 2.46 7.58 -2.38 -0.02 2.44 16 16 N -0.69 -21.25 5.08 -437.30 -2.22 -23.47 16 17 C 0.49 15.40 7.68 87.66 0.67 16.08 16 18 O -0.57 -23.53 15.40 -3.04 -0.05 -23.57 16 19 C 0.11 2.32 7.03 85.63 0.60 2.93 16 20 N -0.37 -9.63 3.41 -355.79 -1.21 -10.84 16 21 C 0.26 5.28 12.63 180.36 2.28 7.56 16 22 N -0.57 -14.88 11.19 -204.00 -2.28 -17.17 16 23 C 0.18 5.12 13.03 180.77 2.36 7.47 16 24 N -0.34 -11.42 11.81 -61.25 -0.72 -12.14 16 25 C 0.16 6.49 4.74 87.42 0.41 6.90 16 26 H 0.25 12.56 8.31 -92.71 -0.77 11.79 16 27 H 0.01 0.56 8.13 -2.39 -0.02 0.55 16 28 H 0.06 2.94 6.06 -2.39 -0.01 2.92 16 29 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.08 3.38 5.28 -2.39 -0.01 3.37 16 31 H 0.06 1.82 6.28 -2.39 -0.02 1.81 16 32 H 0.08 2.05 8.14 -2.38 -0.02 2.03 16 33 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.06 2.19 6.58 -2.39 -0.02 2.18 16 35 H 0.41 11.28 8.44 -92.71 -0.78 10.50 16 36 H 0.19 1.56 8.09 -2.39 -0.02 1.54 16 37 H 0.13 2.52 8.14 -2.39 -0.02 2.50 16 38 H 0.27 1.91 8.06 -2.91 -0.02 1.89 16 39 H 0.24 4.88 8.06 -2.91 -0.02 4.86 16 40 H 0.01 0.28 7.80 -2.38 -0.02 0.27 16 41 H 0.04 1.57 6.89 -2.39 -0.02 1.55 16 Total: -1.00 -72.21 329.67 2.76 -69.45 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: 0.27 Total: 18.60 kcal Atomic # 6 Polarization: 21.57 SS G_CDS: 8.59 Total: 30.16 kcal Atomic # 7 Polarization: -130.81 SS G_CDS: -8.09 Total: -138.90 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.05 Total: -23.57 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -72.21 2.76 -69.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034514469.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.979 kcal (2) G-P(sol) polarization free energy of solvation -72.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds