Wall clock time and date at job start Tue Mar 31 2020 03:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99818 * 2 1 4 4 H 1.48503 * 109.46821 * 239.99666 * 3 2 1 5 5 H 1.48503 * 109.47046 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47266 * 119.99549 * 3 2 1 7 7 C 1.38816 * 120.00010 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00027 * 195.71420 * 7 2 1 9 9 N 1.36936 * 120.00147 * 15.71271 * 7 2 1 10 10 C 1.47583 * 118.62322 * 26.50043 * 9 7 2 11 11 C 1.53954 * 112.11962 * 137.87324 * 10 9 7 12 12 C 1.50880 * 110.09370 * 319.44928 * 11 10 9 13 13 C 1.52565 * 109.36282 * 91.88878 * 12 11 10 14 14 C 1.47089 * 114.32525 * 274.98808 * 13 12 11 15 15 H 1.09003 * 109.33020 * 302.54013 * 14 13 12 16 16 N 1.46493 * 109.33307 * 183.06026 * 14 13 12 17 17 C 1.34780 * 120.00441 * 154.12845 * 16 14 13 18 18 O 1.21279 * 120.00025 * 0.02562 * 17 16 14 19 19 C 1.50701 * 119.99992 * 180.02562 * 17 16 14 20 20 N 1.46502 * 109.46779 * 180.02562 * 19 17 16 21 21 C 1.34426 * 126.82238 * 124.71396 * 20 19 17 22 22 N 1.30840 * 108.07790 * 179.89100 * 21 20 19 23 23 C 1.33237 * 109.82512 * 0.37757 * 22 21 20 24 24 N 1.30720 * 108.95112 * 359.76646 * 23 22 21 25 25 C 1.44576 * 118.64501 * 206.54702 * 9 7 2 26 26 H 0.97000 * 120.00099 * 0.02562 * 1 2 3 27 27 H 1.09004 * 108.94507 * 17.20076 * 10 9 7 28 28 H 1.09000 * 108.96546 * 258.55722 * 10 9 7 29 29 H 1.09000 * 109.36069 * 199.25642 * 11 10 9 30 30 H 1.08995 * 109.25790 * 79.57526 * 11 10 9 31 31 H 1.09002 * 109.49041 * 331.91723 * 12 11 10 32 32 H 1.09003 * 109.50048 * 211.86403 * 12 11 10 33 33 H 1.08996 * 108.51511 * 153.73064 * 13 12 11 34 34 H 1.09009 * 108.51150 * 36.23403 * 13 12 11 35 35 H 0.97006 * 120.00117 * 334.13153 * 16 14 13 36 36 H 1.09004 * 109.47098 * 299.99894 * 19 17 16 37 37 H 1.09000 * 109.47126 * 60.00180 * 19 17 16 38 38 H 1.08001 * 125.96429 * 0.03383 * 21 20 19 39 39 H 1.08006 * 125.52626 * 179.79903 * 23 22 21 40 40 H 1.08998 * 109.44873 * 150.68597 * 25 9 7 41 41 H 1.09000 * 109.44670 * 30.74451 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0600 -1.2195 0.2539 9 7 1.3640 -2.3661 -0.3201 10 6 0.1806 -2.2986 -1.1994 11 6 0.1735 -3.4245 -2.2493 12 6 1.5653 -3.6358 -2.7922 13 6 2.2725 -4.7074 -1.9680 14 6 2.9231 -4.2030 -0.7490 15 1 3.6421 -3.4290 -1.0176 16 7 3.6259 -5.3029 -0.0839 17 6 4.6847 -5.0445 0.7092 18 8 5.0553 -3.9013 0.8725 19 6 5.4079 -6.1760 1.3929 20 7 6.5120 -5.6380 2.1916 21 6 6.7275 -5.8344 3.5038 22 7 7.8156 -5.1889 3.8376 23 6 8.3157 -4.5649 2.7720 24 7 7.5522 -4.8097 1.7395 25 6 1.8685 -3.6097 0.2175 26 1 -0.4850 0.8400 -0.0004 27 1 0.1750 -1.3366 -1.7119 28 1 -0.7191 -2.3779 -0.5892 29 1 -0.4957 -3.1531 -3.0657 30 1 -0.1774 -4.3463 -1.7855 31 1 2.1248 -2.7023 -2.7319 32 1 1.5054 -3.9574 -3.8320 33 1 3.0289 -5.1818 -2.5931 34 1 1.5409 -5.4632 -1.6822 35 1 3.3294 -6.2172 -0.2142 36 1 4.7152 -6.7093 2.0440 37 1 5.8021 -6.8614 0.6426 38 1 6.1115 -6.4241 4.1665 39 1 9.2077 -3.9559 2.7625 40 1 1.0457 -4.3150 0.3342 41 1 2.3288 -3.4253 1.1882 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034514470.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:52 Heat of formation + Delta-G solvation = 87.053182 kcal Electronic energy + Delta-G solvation = -24049.823080 eV Core-core repulsion = 20581.882958 eV Total energy + Delta-G solvation = -3467.940122 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.07361 -39.72761 -37.73902 -34.66651 -34.02795 -33.27101 -31.21668 -30.99171 -30.35151 -27.97019 -25.95082 -24.29932 -23.22487 -22.20297 -22.00566 -20.40807 -20.13725 -19.19646 -17.49439 -17.27837 -16.62359 -16.03203 -15.60018 -15.14900 -14.98500 -14.58849 -14.41140 -14.11538 -13.63718 -13.60767 -13.20728 -12.85534 -12.66554 -12.53321 -12.14632 -11.88738 -11.55857 -11.06086 -10.94244 -10.76861 -10.59349 -10.21350 -10.17152 -10.14727 -10.04713 -9.77223 -9.74456 -9.66205 -9.61402 -9.41750 -8.89258 -8.32386 -6.64783 -5.74797 -3.18465 1.58550 2.13646 2.69501 2.97481 3.22719 3.44712 3.48148 3.52829 4.24876 4.33009 4.54626 4.65592 4.73613 4.83228 5.19271 5.22156 5.32507 5.42208 5.51299 5.69945 5.94568 5.99421 6.09360 6.15248 6.25330 6.34846 6.41046 6.56591 6.57814 6.62711 6.65667 6.71883 6.79414 6.89417 7.05911 7.43584 7.64238 7.71525 7.92110 8.04681 8.37327 8.51732 9.28377 9.93099 10.36265 11.32801 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.015256 B = 0.004689 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.927266 B = 5969.386825 C = 7317.205068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.006 3.994 3 Si 0.900 3.100 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.257 4.257 8 H 0.068 0.932 9 N -0.583 5.583 10 C 0.176 3.824 11 C -0.143 4.143 12 C -0.101 4.101 13 C -0.111 4.111 14 C 0.115 3.885 15 H 0.088 0.912 16 N -0.721 5.721 17 C 0.492 3.508 18 O -0.498 6.498 19 C 0.110 3.890 20 N -0.367 5.367 21 C 0.253 3.747 22 N -0.547 5.547 23 C 0.190 3.810 24 N -0.287 5.287 25 C 0.159 3.841 26 H 0.253 0.747 27 H 0.075 0.925 28 H 0.024 0.976 29 H 0.053 0.947 30 H 0.044 0.956 31 H 0.077 0.923 32 H 0.048 0.952 33 H 0.047 0.953 34 H 0.053 0.947 35 H 0.392 0.608 36 H 0.128 0.872 37 H 0.115 0.885 38 H 0.218 0.782 39 H 0.215 0.785 40 H 0.031 0.969 41 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.680 -17.411 0.024 18.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.192 4.192 3 Si 0.730 3.270 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.209 1.209 7 C -0.387 4.387 8 H 0.086 0.914 9 N -0.304 5.304 10 C 0.052 3.948 11 C -0.182 4.182 12 C -0.139 4.139 13 C -0.149 4.149 14 C 0.009 3.991 15 H 0.106 0.894 16 N -0.373 5.373 17 C 0.274 3.726 18 O -0.371 6.371 19 C -0.016 4.016 20 N -0.159 5.159 21 C -0.044 4.044 22 N -0.274 5.274 23 C -0.113 4.113 24 N -0.113 5.113 25 C 0.029 3.971 26 H 0.063 0.937 27 H 0.094 0.906 28 H 0.043 0.957 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.095 0.905 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.225 0.775 36 H 0.146 0.854 37 H 0.133 0.867 38 H 0.235 0.765 39 H 0.232 0.768 40 H 0.049 0.951 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.022 -16.128 -0.293 17.593 hybrid contribution -0.012 0.239 -0.021 0.240 sum 7.010 -15.889 -0.314 17.369 Atomic orbital electron populations 1.70066 1.05170 1.25486 1.54343 1.24999 0.95239 0.98310 1.00652 0.86398 0.78922 0.83364 0.78322 1.21005 1.21669 1.20855 1.19253 0.92658 0.84783 1.42015 0.91440 1.43571 1.32194 1.01532 1.53118 1.21055 0.88380 0.95847 0.89565 1.22082 0.95866 1.00623 0.99664 1.20830 0.97085 0.99443 0.96569 1.20562 0.99206 0.98938 0.96172 1.21316 0.96038 0.87921 0.93839 0.89402 1.46098 1.31269 1.10784 1.49164 1.20295 0.81228 0.90326 0.80749 1.90872 1.64550 1.21524 1.60121 1.21623 0.87180 0.95706 0.97127 1.49975 1.20373 1.37400 1.08123 1.26040 0.95540 0.98386 0.84446 1.70508 1.10967 1.15235 1.30660 1.26001 1.00243 0.99297 0.85775 1.78212 0.98878 1.10616 1.23613 1.20888 0.93287 0.88553 0.94336 0.93705 0.90623 0.95742 0.92869 0.93703 0.90458 0.93353 0.93421 0.92810 0.77502 0.85407 0.86695 0.76547 0.76824 0.95064 0.93539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.40 11.01 55.49 0.61 -25.79 16 2 C 0.01 0.18 4.87 -17.43 -0.08 0.09 16 3 Si 0.90 22.69 29.58 -169.99 -5.03 17.66 16 4 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.28 -7.20 7.11 56.52 0.40 -6.79 16 7 C -0.26 -7.23 9.44 -15.06 -0.14 -7.37 16 8 H 0.07 1.98 7.88 -52.49 -0.41 1.57 16 9 N -0.58 -14.36 2.27 -172.10 -0.39 -14.75 16 10 C 0.18 4.11 4.67 -2.95 -0.01 4.09 16 11 C -0.14 -2.55 5.71 -27.30 -0.16 -2.71 16 12 C -0.10 -1.68 5.51 -28.02 -0.15 -1.83 16 13 C -0.11 -1.62 4.55 -29.79 -0.14 -1.75 16 14 C 0.12 1.97 2.35 -69.79 -0.16 1.80 16 15 H 0.09 1.88 7.55 -51.93 -0.39 1.49 16 16 N -0.72 -9.13 5.05 -55.63 -0.28 -9.41 16 17 C 0.49 7.05 7.83 -10.98 -0.09 6.96 16 18 O -0.50 -10.33 15.39 5.56 0.09 -10.25 16 19 C 0.11 0.98 7.03 -5.19 -0.04 0.95 16 20 N -0.37 -4.55 3.41 -63.81 -0.22 -4.76 16 21 C 0.25 2.73 12.63 -90.65 -1.14 1.58 16 22 N -0.55 -7.33 11.19 -15.83 -0.18 -7.50 16 23 C 0.19 2.58 13.03 -91.81 -1.20 1.39 16 24 N -0.29 -4.45 11.81 29.29 0.35 -4.10 16 25 C 0.16 3.29 5.24 -4.09 -0.02 3.27 16 26 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 27 H 0.08 1.98 6.33 -51.93 -0.33 1.65 16 28 H 0.02 0.62 8.03 -51.93 -0.42 0.20 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.04 0.74 7.32 -51.93 -0.38 0.36 16 31 H 0.08 1.53 7.48 -51.93 -0.39 1.15 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.70 7.36 -51.92 -0.38 0.32 16 35 H 0.39 3.24 8.58 -40.82 -0.35 2.88 16 36 H 0.13 0.56 8.09 -51.93 -0.42 0.14 16 37 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.22 1.19 8.06 -52.49 -0.42 0.77 16 39 H 0.22 2.16 8.06 -52.48 -0.42 1.74 16 40 H 0.03 0.60 8.07 -51.93 -0.42 0.18 16 41 H 0.05 1.07 7.98 -51.93 -0.41 0.66 16 LS Contribution 335.54 15.07 5.06 5.06 Total: -1.00 -37.29 335.54 -9.31 -46.59 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -5.98 Total: 0.79 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: -3.33 Total: 6.47 kcal Atomic # 7 Polarization: -66.21 SS G_CDS: -0.11 Total: -66.32 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.09 Total: -10.25 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.03 Total: 17.66 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -37.29 -9.31 -46.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034514470.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.648 kcal (2) G-P(sol) polarization free energy of solvation -37.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds