Wall clock time and date at job start Tue Mar 31 2020 03:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99818 * 2 1 4 4 H 1.48503 * 109.46821 * 239.99666 * 3 2 1 5 5 H 1.48503 * 109.47046 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47266 * 119.99549 * 3 2 1 7 7 C 1.38816 * 120.00010 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00027 * 195.71420 * 7 2 1 9 9 N 1.36936 * 120.00147 * 15.71271 * 7 2 1 10 10 C 1.47583 * 118.62322 * 26.50043 * 9 7 2 11 11 C 1.53954 * 112.11962 * 137.87324 * 10 9 7 12 12 C 1.50880 * 110.09370 * 319.44928 * 11 10 9 13 13 C 1.52565 * 109.36282 * 91.88878 * 12 11 10 14 14 C 1.47089 * 114.32525 * 274.98808 * 13 12 11 15 15 H 1.09003 * 109.33020 * 302.54013 * 14 13 12 16 16 N 1.46493 * 109.33307 * 183.06026 * 14 13 12 17 17 C 1.34780 * 120.00441 * 154.12845 * 16 14 13 18 18 O 1.21279 * 120.00025 * 0.02562 * 17 16 14 19 19 C 1.50701 * 119.99992 * 180.02562 * 17 16 14 20 20 N 1.46502 * 109.46779 * 180.02562 * 19 17 16 21 21 C 1.34426 * 126.82238 * 124.71396 * 20 19 17 22 22 N 1.30840 * 108.07790 * 179.89100 * 21 20 19 23 23 C 1.33237 * 109.82512 * 0.37757 * 22 21 20 24 24 N 1.30720 * 108.95112 * 359.76646 * 23 22 21 25 25 C 1.44576 * 118.64501 * 206.54702 * 9 7 2 26 26 H 0.97000 * 120.00099 * 0.02562 * 1 2 3 27 27 H 1.09004 * 108.94507 * 17.20076 * 10 9 7 28 28 H 1.09000 * 108.96546 * 258.55722 * 10 9 7 29 29 H 1.09000 * 109.36069 * 199.25642 * 11 10 9 30 30 H 1.08995 * 109.25790 * 79.57526 * 11 10 9 31 31 H 1.09002 * 109.49041 * 331.91723 * 12 11 10 32 32 H 1.09003 * 109.50048 * 211.86403 * 12 11 10 33 33 H 1.08996 * 108.51511 * 153.73064 * 13 12 11 34 34 H 1.09009 * 108.51150 * 36.23403 * 13 12 11 35 35 H 0.97006 * 120.00117 * 334.13153 * 16 14 13 36 36 H 1.09004 * 109.47098 * 299.99894 * 19 17 16 37 37 H 1.09000 * 109.47126 * 60.00180 * 19 17 16 38 38 H 1.08001 * 125.96429 * 0.03383 * 21 20 19 39 39 H 1.08006 * 125.52626 * 179.79903 * 23 22 21 40 40 H 1.08998 * 109.44873 * 150.68597 * 25 9 7 41 41 H 1.09000 * 109.44670 * 30.74451 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0600 -1.2195 0.2539 9 7 1.3640 -2.3661 -0.3201 10 6 0.1806 -2.2986 -1.1994 11 6 0.1735 -3.4245 -2.2493 12 6 1.5653 -3.6358 -2.7922 13 6 2.2725 -4.7074 -1.9680 14 6 2.9231 -4.2030 -0.7490 15 1 3.6421 -3.4290 -1.0176 16 7 3.6259 -5.3029 -0.0839 17 6 4.6847 -5.0445 0.7092 18 8 5.0553 -3.9013 0.8725 19 6 5.4079 -6.1760 1.3929 20 7 6.5120 -5.6380 2.1916 21 6 6.7275 -5.8344 3.5038 22 7 7.8156 -5.1889 3.8376 23 6 8.3157 -4.5649 2.7720 24 7 7.5522 -4.8097 1.7395 25 6 1.8685 -3.6097 0.2175 26 1 -0.4850 0.8400 -0.0004 27 1 0.1750 -1.3366 -1.7119 28 1 -0.7191 -2.3779 -0.5892 29 1 -0.4957 -3.1531 -3.0657 30 1 -0.1774 -4.3463 -1.7855 31 1 2.1248 -2.7023 -2.7319 32 1 1.5054 -3.9574 -3.8320 33 1 3.0289 -5.1818 -2.5931 34 1 1.5409 -5.4632 -1.6822 35 1 3.3294 -6.2172 -0.2142 36 1 4.7152 -6.7093 2.0440 37 1 5.8021 -6.8614 0.6426 38 1 6.1115 -6.4241 4.1665 39 1 9.2077 -3.9559 2.7625 40 1 1.0457 -4.3150 0.3342 41 1 2.3288 -3.4253 1.1882 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034514470.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:51 Heat of formation + Delta-G solvation = 60.932956 kcal Electronic energy + Delta-G solvation = -24050.955738 eV Core-core repulsion = 20581.882958 eV Total energy + Delta-G solvation = -3469.072780 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.97292 -40.98642 -39.23400 -36.26507 -34.97215 -34.83014 -32.91897 -32.16201 -31.79861 -28.96152 -27.81912 -25.84157 -24.93218 -23.28517 -22.87355 -21.65993 -21.47563 -20.83055 -18.63997 -18.44084 -18.28821 -17.36086 -16.64742 -16.56933 -16.43825 -15.84090 -15.82771 -15.41607 -15.08166 -14.84149 -14.61706 -14.29130 -14.10208 -13.82929 -13.67139 -13.12981 -13.03079 -12.87764 -12.73751 -12.51408 -12.34429 -12.08277 -11.66517 -11.48797 -11.39798 -11.27820 -11.14775 -11.00376 -10.75256 -10.57924 -10.45138 -10.12762 -8.66517 -7.92010 -5.37094 0.70712 1.36886 1.37735 1.38128 1.46496 1.62242 2.03583 2.18605 2.46884 3.20521 3.53976 3.55616 3.71417 3.80192 3.92270 4.09976 4.11563 4.18165 4.26170 4.41717 4.44777 4.51473 4.72000 4.76030 4.99278 5.04000 5.11825 5.22524 5.25712 5.27919 5.35290 5.42135 5.48797 5.59308 5.66157 5.69931 5.81698 5.91258 6.36755 6.62728 7.13815 7.14924 7.36327 7.92534 8.25349 9.11681 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.015256 B = 0.004689 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1834.927266 B = 5969.386825 C = 7317.205068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.039 4.039 3 Si 0.952 3.048 4 H -0.281 1.281 5 H -0.282 1.282 6 H -0.287 1.287 7 C -0.262 4.262 8 H 0.042 0.958 9 N -0.598 5.598 10 C 0.184 3.816 11 C -0.130 4.130 12 C -0.100 4.100 13 C -0.107 4.107 14 C 0.136 3.864 15 H 0.035 0.965 16 N -0.701 5.701 17 C 0.485 3.515 18 O -0.573 6.573 19 C 0.116 3.884 20 N -0.376 5.376 21 C 0.263 3.737 22 N -0.578 5.578 23 C 0.181 3.819 24 N -0.339 5.339 25 C 0.160 3.840 26 H 0.251 0.749 27 H 0.037 0.963 28 H -0.004 1.004 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.033 0.967 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.421 0.579 36 H 0.186 0.814 37 H 0.151 0.849 38 H 0.270 0.730 39 H 0.232 0.768 40 H 0.056 0.944 41 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.243 -21.137 -0.456 22.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.235 4.235 3 Si 0.781 3.219 4 H -0.208 1.208 5 H -0.208 1.208 6 H -0.213 1.213 7 C -0.393 4.393 8 H 0.059 0.941 9 N -0.320 5.320 10 C 0.060 3.940 11 C -0.168 4.168 12 C -0.138 4.138 13 C -0.145 4.145 14 C 0.028 3.972 15 H 0.053 0.947 16 N -0.355 5.355 17 C 0.270 3.730 18 O -0.450 6.450 19 C -0.008 4.008 20 N -0.168 5.168 21 C -0.033 4.033 22 N -0.306 5.306 23 C -0.121 4.121 24 N -0.166 5.166 25 C 0.032 3.968 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.015 0.985 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.052 0.948 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.106 0.894 35 H 0.259 0.741 36 H 0.203 0.797 37 H 0.168 0.832 38 H 0.285 0.715 39 H 0.248 0.752 40 H 0.074 0.926 41 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges 6.573 -19.950 -0.793 21.020 hybrid contribution 0.112 1.348 0.184 1.365 sum 6.685 -18.602 -0.609 19.776 Atomic orbital electron populations 1.70182 1.05969 1.25746 1.55438 1.25561 0.96014 1.00701 1.01193 0.85582 0.77894 0.80502 0.77922 1.20780 1.20767 1.21340 1.19224 0.91758 0.86762 1.41530 0.94059 1.43710 1.32377 1.01871 1.54022 1.20866 0.86617 0.96580 0.89966 1.21938 0.97385 0.99149 0.98364 1.20819 0.95680 0.98333 0.99002 1.20501 1.00459 0.98783 0.94766 1.20652 0.93913 0.88319 0.94270 0.94661 1.45782 1.30505 1.11106 1.48152 1.21359 0.80878 0.90838 0.79887 1.90861 1.66569 1.25066 1.62547 1.22016 0.86843 0.93329 0.98661 1.50162 1.20393 1.37180 1.09024 1.27051 0.94850 0.97093 0.84299 1.70508 1.12599 1.16432 1.31053 1.26446 1.00697 0.99265 0.85721 1.78110 1.00558 1.12653 1.25304 1.20994 0.94582 0.87660 0.93588 0.93991 0.94482 0.98550 0.91184 0.91118 0.94815 0.89920 0.90648 0.89445 0.74081 0.79680 0.83191 0.71473 0.75175 0.92628 0.97066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.09 11.01 21.65 0.24 -55.85 16 2 C -0.04 -2.29 4.87 84.86 0.41 -1.88 16 3 Si 0.95 48.50 29.58 68.60 2.03 50.53 16 4 H -0.28 -14.11 7.11 99.48 0.71 -13.40 16 5 H -0.28 -13.89 7.11 99.48 0.71 -13.18 16 6 H -0.29 -14.71 7.11 99.48 0.71 -14.01 16 7 C -0.26 -15.53 9.44 84.03 0.79 -14.74 16 8 H 0.04 2.62 7.88 -2.91 -0.02 2.60 16 9 N -0.60 -30.49 2.27 -698.41 -1.58 -32.08 16 10 C 0.18 8.77 4.67 86.49 0.40 9.18 16 11 C -0.13 -4.35 5.71 30.23 0.17 -4.17 16 12 C -0.10 -3.10 5.51 29.76 0.16 -2.93 16 13 C -0.11 -2.75 4.55 28.61 0.13 -2.62 16 14 C 0.14 4.54 2.35 43.79 0.10 4.64 16 15 H 0.04 1.57 7.55 -2.39 -0.02 1.55 16 16 N -0.70 -15.91 5.05 -448.29 -2.26 -18.18 16 17 C 0.49 13.21 7.83 87.66 0.69 13.89 16 18 O -0.57 -24.63 15.39 -3.03 -0.05 -24.67 16 19 C 0.12 1.62 7.03 85.63 0.60 2.22 16 20 N -0.38 -8.55 3.41 -355.79 -1.21 -9.76 16 21 C 0.26 4.99 12.63 180.36 2.28 7.26 16 22 N -0.58 -14.96 11.19 -203.99 -2.28 -17.25 16 23 C 0.18 5.00 13.03 180.76 2.36 7.36 16 24 N -0.34 -10.57 11.81 -61.24 -0.72 -11.30 16 25 C 0.16 6.67 5.24 87.37 0.46 7.12 16 26 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 27 H 0.04 2.02 6.33 -2.38 -0.02 2.00 16 28 H 0.00 -0.19 8.03 -2.39 -0.02 -0.21 16 29 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.07 2.03 7.32 -2.39 -0.02 2.02 16 31 H 0.03 1.34 7.48 -2.39 -0.02 1.33 16 32 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.09 1.74 7.36 -2.38 -0.02 1.73 16 35 H 0.42 4.81 8.58 -92.70 -0.80 4.01 16 36 H 0.19 0.43 8.09 -2.39 -0.02 0.41 16 37 H 0.15 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.27 1.67 8.06 -2.91 -0.02 1.65 16 39 H 0.23 4.87 8.06 -2.91 -0.02 4.84 16 40 H 0.06 2.02 8.07 -2.39 -0.02 2.00 16 41 H 0.01 0.53 7.98 -2.39 -0.02 0.51 16 Total: -1.00 -91.60 335.54 2.96 -88.64 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: 0.24 Total: 4.57 kcal Atomic # 6 Polarization: 16.77 SS G_CDS: 8.56 Total: 25.33 kcal Atomic # 7 Polarization: -136.58 SS G_CDS: -7.83 Total: -144.41 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.05 Total: -24.67 kcal Atomic # 14 Polarization: 48.50 SS G_CDS: 2.03 Total: 50.53 kcal Total: -91.60 2.96 -88.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034514470.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.577 kcal (2) G-P(sol) polarization free energy of solvation -91.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds