Wall clock time and date at job start Tue Mar 31 2020 03:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86802 * 120.00168 * 2 1 4 4 H 1.48494 * 109.47002 * 240.00144 * 3 2 1 5 5 H 1.48500 * 109.47127 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46824 * 120.00501 * 3 2 1 7 7 C 1.38811 * 119.99720 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99964 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00139 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00215 * 180.02562 * 9 7 2 11 11 H 1.08993 * 109.47109 * 34.99344 * 10 9 7 12 12 C 1.52997 * 109.47320 * 154.99636 * 10 9 7 13 13 C 1.52995 * 109.47319 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47507 * 300.00556 * 13 12 10 15 15 H 1.09001 * 109.46751 * 299.99725 * 14 13 12 16 16 N 1.46499 * 109.47481 * 179.97438 * 14 13 12 17 17 C 1.34777 * 120.00199 * 154.99940 * 16 14 13 18 18 O 1.21283 * 119.99750 * 359.97438 * 17 16 14 19 19 C 1.50702 * 119.99928 * 180.27479 * 17 16 14 20 20 C 1.50700 * 109.46869 * 179.72354 * 19 17 16 21 21 N 1.33241 * 125.52584 * 269.68822 * 20 19 17 22 22 C 1.30830 * 109.82844 * 179.85606 * 21 20 19 23 23 N 1.34430 * 108.07674 * 0.40877 * 22 21 20 24 24 H 0.96996 * 126.81709 * 179.72088 * 23 22 21 25 25 N 1.30706 * 125.52779 * 90.00107 * 20 19 17 26 26 C 1.52997 * 109.47284 * 59.99423 * 14 13 12 27 27 C 1.53000 * 109.47350 * 300.00347 * 26 14 13 28 28 H 0.96999 * 119.99614 * 359.97438 * 1 2 3 29 29 H 0.97007 * 119.99748 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.46979 * 59.99838 * 12 10 9 31 31 H 1.09000 * 109.47470 * 300.00042 * 12 10 9 32 32 H 1.09000 * 109.47384 * 179.97438 * 13 12 10 33 33 H 1.09007 * 109.46796 * 59.99739 * 13 12 10 34 34 H 0.97000 * 119.99484 * 334.99037 * 16 14 13 35 35 H 1.09004 * 109.46965 * 299.72211 * 19 17 16 36 36 H 1.08994 * 109.46990 * 59.72065 * 19 17 16 37 37 H 1.08001 * 125.95877 * 180.12478 * 22 21 20 38 38 H 1.08993 * 109.47268 * 60.00476 * 26 14 13 39 39 H 1.09006 * 109.47495 * 180.02562 * 26 14 13 40 40 H 1.09001 * 109.47157 * 299.99986 * 27 26 14 41 41 H 1.09000 * 109.47626 * 179.97438 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0005 11 1 2.9687 -3.5506 0.5888 12 6 1.1808 -4.7522 0.6092 13 6 1.9454 -6.0773 0.6086 14 6 2.3089 -6.4559 -0.8286 15 1 1.3979 -6.5618 -1.4178 16 7 3.0416 -7.7245 -0.8291 17 6 3.0325 -8.5075 -1.9260 18 8 2.4173 -8.1622 -2.9125 19 6 3.7812 -9.8154 -1.9243 20 6 3.6066 -10.4959 -3.2576 21 7 2.6365 -11.3553 -3.5671 22 6 2.7762 -11.7552 -4.8049 23 7 3.8641 -11.1542 -5.3172 24 1 4.2187 -11.2602 -6.2137 25 7 4.3854 -10.3431 -4.2961 26 6 3.1860 -5.3606 -1.4383 27 6 2.4213 -4.0354 -1.4378 28 1 -0.4849 0.8401 0.0004 29 1 0.3555 -2.3880 0.0002 30 1 0.2700 -4.8583 0.0198 31 1 0.9216 -4.4823 1.6329 32 1 1.3207 -6.8575 1.0433 33 1 2.8564 -5.9713 1.1977 34 1 3.5333 -8.0008 -0.0400 35 1 4.8404 -9.6276 -1.7482 36 1 3.3898 -10.4570 -1.1349 37 1 2.1326 -12.4506 -5.3231 38 1 4.0969 -5.2547 -0.8492 39 1 3.4446 -5.6301 -2.4624 40 1 1.5104 -4.1414 -2.0270 41 1 3.0464 -3.2550 -1.8717 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034774118.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:08 Heat of formation + Delta-G solvation = 46.199836 kcal Electronic energy + Delta-G solvation = -22872.394324 eV Core-core repulsion = 19402.682668 eV Total energy + Delta-G solvation = -3469.711656 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.38509 -39.92146 -37.92539 -34.82859 -33.60913 -32.98236 -31.96847 -30.73416 -30.35805 -29.28349 -27.04698 -23.67699 -23.11843 -22.35146 -21.74262 -20.70228 -20.19243 -19.37531 -18.63569 -17.37181 -16.88053 -16.27328 -15.79827 -15.49073 -15.08643 -14.81298 -14.12435 -13.93402 -13.74036 -13.58971 -13.45909 -13.07100 -12.53274 -12.44816 -12.30263 -11.95246 -11.76046 -11.39566 -10.99301 -10.77564 -10.71943 -10.63579 -10.47114 -10.34002 -10.18484 -10.11267 -10.05872 -9.75942 -9.71647 -9.52537 -8.93517 -8.80545 -6.90204 -5.71857 -3.00162 1.32082 2.34182 2.51191 2.60097 3.23836 3.46841 3.51162 3.52194 3.79266 4.31166 4.58064 4.62604 4.73283 4.98025 5.05166 5.09103 5.19752 5.33142 5.56091 5.66468 5.72878 5.78375 5.87299 5.91289 5.92922 6.06112 6.08858 6.29036 6.31633 6.35521 6.53353 6.61843 6.70311 6.71501 6.77590 7.03810 7.19980 7.47145 7.73923 7.77530 8.19914 8.47209 9.57866 10.16982 10.51475 11.50937 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.035021 B = 0.002573 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.337702 B =10877.802539 C =11188.885661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.236 4.236 8 H 0.069 0.931 9 N -0.726 5.726 10 C 0.177 3.823 11 H 0.046 0.954 12 C -0.121 4.121 13 C -0.118 4.118 14 C 0.146 3.854 15 H 0.087 0.913 16 N -0.724 5.724 17 C 0.520 3.480 18 O -0.529 6.529 19 C -0.050 4.050 20 C 0.249 3.751 21 N -0.535 5.535 22 C 0.263 3.737 23 N -0.484 5.484 24 H 0.442 0.558 25 N -0.304 5.304 26 C -0.124 4.124 27 C -0.132 4.132 28 H 0.255 0.745 29 H 0.383 0.617 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.399 0.601 35 H 0.117 0.883 36 H 0.122 0.878 37 H 0.223 0.777 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.176 -26.396 -4.720 28.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.368 4.368 8 H 0.087 0.913 9 N -0.366 5.366 10 C 0.068 3.932 11 H 0.064 0.936 12 C -0.160 4.160 13 C -0.157 4.157 14 C 0.043 3.957 15 H 0.105 0.895 16 N -0.375 5.375 17 C 0.304 3.696 18 O -0.404 6.404 19 C -0.093 4.093 20 C -0.034 4.034 21 N -0.263 5.263 22 C -0.037 4.037 23 N -0.202 5.202 24 H 0.287 0.713 25 N -0.133 5.133 26 C -0.163 4.163 27 C -0.173 4.173 28 H 0.065 0.935 29 H 0.217 0.783 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.233 0.767 35 H 0.135 0.865 36 H 0.140 0.860 37 H 0.239 0.761 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.180 -25.616 -5.155 27.380 hybrid contribution 0.471 0.577 -0.570 0.938 sum 8.652 -25.039 -5.725 27.103 Atomic orbital electron populations 1.69654 1.05083 1.25676 1.57853 1.24739 0.95506 0.97641 1.03216 0.86286 0.78518 0.83699 0.77802 1.21334 1.21743 1.21325 1.19200 0.90928 0.84190 1.42447 0.91298 1.42431 1.05791 0.99806 1.88568 1.20239 0.94280 0.85961 0.92767 0.93605 1.21752 0.98958 0.93494 1.01751 1.21745 1.00845 0.98256 0.94827 1.21108 0.95442 0.81680 0.97507 0.89501 1.46074 1.53544 1.21977 1.15926 1.20132 0.81210 0.84922 0.83373 1.90754 1.42883 1.73633 1.33161 1.19916 1.03285 0.94446 0.91639 1.23294 0.90013 0.94744 0.95346 1.70352 1.25781 1.16394 1.13790 1.26069 0.89923 0.96863 0.90807 1.48075 1.22698 1.34759 1.14635 0.71286 1.77982 1.23291 1.14942 0.97079 1.21895 0.98586 0.95381 1.00427 1.22224 0.99754 0.94525 1.00811 0.93523 0.78312 0.91994 0.91355 0.91806 0.91529 0.76749 0.86462 0.85996 0.76079 0.92273 0.92454 0.92553 0.91865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.60 13.06 55.49 0.72 -27.88 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.69 29.55 -169.99 -5.02 17.66 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.24 -6.63 9.93 -15.06 -0.15 -6.78 16 8 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 9 N -0.73 -18.37 5.12 -53.42 -0.27 -18.64 16 10 C 0.18 3.51 2.77 -67.93 -0.19 3.32 16 11 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 12 C -0.12 -1.95 5.39 -26.74 -0.14 -2.09 16 13 C -0.12 -1.46 5.39 -26.73 -0.14 -1.60 16 14 C 0.15 1.97 2.45 -67.93 -0.17 1.80 16 15 H 0.09 1.39 7.58 -51.93 -0.39 0.99 16 16 N -0.72 -7.69 5.08 -53.81 -0.27 -7.96 16 17 C 0.52 6.55 7.79 -10.98 -0.09 6.47 16 18 O -0.53 -9.33 15.70 5.55 0.09 -9.24 16 19 C -0.05 -0.46 6.33 -29.03 -0.18 -0.65 16 20 C 0.25 2.98 6.63 -156.86 -1.04 1.94 16 21 N -0.54 -6.18 11.19 -11.98 -0.13 -6.31 16 22 C 0.26 1.98 13.13 -90.66 -1.19 0.79 16 23 N -0.48 -3.81 7.45 29.53 0.22 -3.59 16 24 H 0.44 1.72 8.96 -182.34 -1.63 0.09 16 25 N -0.30 -3.65 12.80 32.42 0.41 -3.24 16 26 C -0.12 -1.89 5.49 -26.73 -0.15 -2.03 16 27 C -0.13 -2.47 5.50 -26.73 -0.15 -2.62 16 28 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 29 H 0.38 10.33 7.80 -40.82 -0.32 10.01 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.40 2.79 8.60 -40.82 -0.35 2.44 16 35 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.22 0.47 8.06 -52.49 -0.42 0.05 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 344.20 15.07 5.19 5.19 Total: -1.00 -38.29 344.20 -10.07 -48.36 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -7.31 Total: 7.63 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -3.68 Total: -1.98 kcal Atomic # 7 Polarization: -68.29 SS G_CDS: 0.68 Total: -67.61 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.09 Total: -9.24 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.66 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -38.29 -10.07 -48.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034774118.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.559 kcal (2) G-P(sol) polarization free energy of solvation -38.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds