Wall clock time and date at job start Tue Mar 31 2020 03:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86802 * 120.00168 * 2 1 4 4 H 1.48494 * 109.47002 * 240.00144 * 3 2 1 5 5 H 1.48500 * 109.47127 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46824 * 120.00501 * 3 2 1 7 7 C 1.38811 * 119.99720 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99964 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00139 * 359.97438 * 7 2 1 10 10 C 1.46504 * 120.00215 * 180.02562 * 9 7 2 11 11 H 1.08993 * 109.47109 * 34.99344 * 10 9 7 12 12 C 1.52997 * 109.47320 * 154.99636 * 10 9 7 13 13 C 1.52995 * 109.47319 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47507 * 300.00556 * 13 12 10 15 15 H 1.09001 * 109.46751 * 299.99725 * 14 13 12 16 16 N 1.46499 * 109.47481 * 179.97438 * 14 13 12 17 17 C 1.34777 * 120.00199 * 154.99940 * 16 14 13 18 18 O 1.21283 * 119.99750 * 359.97438 * 17 16 14 19 19 C 1.50702 * 119.99928 * 180.27479 * 17 16 14 20 20 C 1.50700 * 109.46869 * 179.72354 * 19 17 16 21 21 N 1.33241 * 125.52584 * 269.68822 * 20 19 17 22 22 C 1.30830 * 109.82844 * 179.85606 * 21 20 19 23 23 N 1.34430 * 108.07674 * 0.40877 * 22 21 20 24 24 H 0.96996 * 126.81709 * 179.72088 * 23 22 21 25 25 N 1.30706 * 125.52779 * 90.00107 * 20 19 17 26 26 C 1.52997 * 109.47284 * 59.99423 * 14 13 12 27 27 C 1.53000 * 109.47350 * 300.00347 * 26 14 13 28 28 H 0.96999 * 119.99614 * 359.97438 * 1 2 3 29 29 H 0.97007 * 119.99748 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.46979 * 59.99838 * 12 10 9 31 31 H 1.09000 * 109.47470 * 300.00042 * 12 10 9 32 32 H 1.09000 * 109.47384 * 179.97438 * 13 12 10 33 33 H 1.09007 * 109.46796 * 59.99739 * 13 12 10 34 34 H 0.97000 * 119.99484 * 334.99037 * 16 14 13 35 35 H 1.09004 * 109.46965 * 299.72211 * 19 17 16 36 36 H 1.08994 * 109.46990 * 59.72065 * 19 17 16 37 37 H 1.08001 * 125.95877 * 180.12478 * 22 21 20 38 38 H 1.08993 * 109.47268 * 60.00476 * 26 14 13 39 39 H 1.09006 * 109.47495 * 180.02562 * 26 14 13 40 40 H 1.09001 * 109.47157 * 299.99986 * 27 26 14 41 41 H 1.09000 * 109.47626 * 179.97438 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6569 -0.0005 11 1 2.9687 -3.5506 0.5888 12 6 1.1808 -4.7522 0.6092 13 6 1.9454 -6.0773 0.6086 14 6 2.3089 -6.4559 -0.8286 15 1 1.3979 -6.5618 -1.4178 16 7 3.0416 -7.7245 -0.8291 17 6 3.0325 -8.5075 -1.9260 18 8 2.4173 -8.1622 -2.9125 19 6 3.7812 -9.8154 -1.9243 20 6 3.6066 -10.4959 -3.2576 21 7 2.6365 -11.3553 -3.5671 22 6 2.7762 -11.7552 -4.8049 23 7 3.8641 -11.1542 -5.3172 24 1 4.2187 -11.2602 -6.2137 25 7 4.3854 -10.3431 -4.2961 26 6 3.1860 -5.3606 -1.4383 27 6 2.4213 -4.0354 -1.4378 28 1 -0.4849 0.8401 0.0004 29 1 0.3555 -2.3880 0.0002 30 1 0.2700 -4.8583 0.0198 31 1 0.9216 -4.4823 1.6329 32 1 1.3207 -6.8575 1.0433 33 1 2.8564 -5.9713 1.1977 34 1 3.5333 -8.0008 -0.0400 35 1 4.8404 -9.6276 -1.7482 36 1 3.3898 -10.4570 -1.1349 37 1 2.1326 -12.4506 -5.3231 38 1 4.0969 -5.2547 -0.8492 39 1 3.4446 -5.6301 -2.4624 40 1 1.5104 -4.1414 -2.0270 41 1 3.0464 -3.2550 -1.8717 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034774118.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:23:07 Heat of formation + Delta-G solvation = 17.333476 kcal Electronic energy + Delta-G solvation = -22873.646064 eV Core-core repulsion = 19402.682668 eV Total energy + Delta-G solvation = -3470.963396 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.06110 -40.98831 -39.25516 -36.36207 -34.67019 -34.25739 -32.77689 -32.36851 -31.67408 -30.28941 -28.49545 -25.57055 -23.85663 -23.61563 -22.89766 -21.83855 -21.21421 -20.66728 -19.29295 -19.09440 -18.11630 -17.35839 -16.83250 -16.54977 -16.25168 -15.87992 -15.59500 -15.36370 -15.06528 -14.87153 -14.69173 -14.32305 -13.96184 -13.46527 -13.17917 -13.13122 -13.07634 -13.01055 -12.77796 -12.42189 -12.29107 -12.16338 -12.01961 -11.65545 -11.44365 -11.24384 -11.18039 -11.07856 -10.95109 -10.82766 -10.57985 -10.00473 -8.98803 -7.92699 -5.20862 0.65931 1.46561 1.49838 1.55724 1.65653 1.71776 1.86679 2.38010 2.57424 3.19008 3.39848 3.68697 3.75881 3.82680 3.91321 3.97429 4.19524 4.31174 4.39304 4.42610 4.48240 4.55605 4.60115 4.61688 4.67913 4.88538 5.02364 5.14197 5.15874 5.24749 5.27298 5.29325 5.37458 5.48929 5.56465 5.56919 5.65189 6.26445 6.30069 6.62319 7.10363 7.32224 7.35219 8.13335 8.35572 9.30927 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.035021 B = 0.002573 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.337702 B =10877.802539 C =11188.885661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.972 3.028 4 H -0.281 1.281 5 H -0.297 1.297 6 H -0.275 1.275 7 C -0.237 4.237 8 H 0.075 0.925 9 N -0.740 5.740 10 C 0.173 3.827 11 H 0.050 0.950 12 C -0.114 4.114 13 C -0.104 4.104 14 C 0.154 3.846 15 H 0.058 0.942 16 N -0.705 5.705 17 C 0.518 3.482 18 O -0.586 6.586 19 C -0.044 4.044 20 C 0.231 3.769 21 N -0.575 5.575 22 C 0.273 3.727 23 N -0.477 5.477 24 H 0.457 0.543 25 N -0.344 5.344 26 C -0.111 4.111 27 C -0.123 4.123 28 H 0.250 0.750 29 H 0.371 0.629 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.421 0.579 35 H 0.145 0.855 36 H 0.151 0.849 37 H 0.271 0.729 38 H 0.079 0.921 39 H 0.042 0.958 40 H 0.035 0.965 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.824 -28.509 -3.812 30.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.801 3.199 4 H -0.208 1.208 5 H -0.223 1.223 6 H -0.201 1.201 7 C -0.369 4.369 8 H 0.093 0.907 9 N -0.379 5.379 10 C 0.065 3.935 11 H 0.068 0.932 12 C -0.153 4.153 13 C -0.142 4.142 14 C 0.049 3.951 15 H 0.077 0.923 16 N -0.357 5.357 17 C 0.304 3.696 18 O -0.465 6.465 19 C -0.086 4.086 20 C -0.052 4.052 21 N -0.304 5.304 22 C -0.025 4.025 23 N -0.196 5.196 24 H 0.305 0.695 25 N -0.174 5.174 26 C -0.151 4.151 27 C -0.164 4.164 28 H 0.059 0.941 29 H 0.202 0.798 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.260 0.740 35 H 0.162 0.838 36 H 0.169 0.831 37 H 0.287 0.713 38 H 0.098 0.902 39 H 0.061 0.939 40 H 0.053 0.947 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 9.906 -27.789 -4.230 29.804 hybrid contribution -0.039 1.140 -0.946 1.482 sum 9.867 -26.649 -5.176 28.885 Atomic orbital electron populations 1.69819 1.06615 1.25987 1.59875 1.25565 0.96381 1.01098 1.04136 0.85237 0.77197 0.79340 0.78170 1.20754 1.22288 1.20078 1.19598 0.91389 0.85333 1.40544 0.90692 1.42686 1.05444 1.01190 1.88584 1.20493 0.94632 0.85011 0.93370 0.93193 1.21648 0.98329 0.94317 1.01007 1.21647 1.01890 0.96474 0.94211 1.20801 0.94219 0.82353 0.97746 0.92326 1.45805 1.52929 1.20487 1.16520 1.20763 0.80383 0.85827 0.82613 1.90734 1.45417 1.75059 1.35328 1.20037 1.04426 0.92536 0.91602 1.23775 0.90163 0.95078 0.96210 1.70346 1.26612 1.17570 1.15875 1.27009 0.89485 0.96046 0.89979 1.48026 1.22736 1.34026 1.14848 0.69465 1.77864 1.24805 1.16611 0.98094 1.21757 0.99140 0.93909 1.00268 1.22037 0.98821 0.95974 0.99588 0.94138 0.79773 0.93171 0.91287 0.89116 0.88992 0.74042 0.83751 0.83098 0.71320 0.90192 0.93940 0.94656 0.94270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.91 13.06 21.65 0.28 -60.62 16 2 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 3 Si 0.97 47.06 29.55 68.60 2.03 49.09 16 4 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 5 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 6 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 7 C -0.24 -13.38 9.93 84.03 0.83 -12.55 16 8 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 9 N -0.74 -38.16 5.12 -322.94 -1.65 -39.82 16 10 C 0.17 6.80 2.77 44.99 0.12 6.93 16 11 H 0.05 1.94 8.08 -2.39 -0.02 1.92 16 12 C -0.11 -3.57 5.39 30.59 0.16 -3.40 16 13 C -0.10 -2.25 5.39 30.59 0.16 -2.09 16 14 C 0.15 3.90 2.45 44.99 0.11 4.01 16 15 H 0.06 1.87 7.58 -2.39 -0.02 1.85 16 16 N -0.71 -13.11 5.08 -442.54 -2.25 -15.36 16 17 C 0.52 12.31 7.79 87.66 0.68 13.00 16 18 O -0.59 -20.80 15.70 -3.04 -0.05 -20.85 16 19 C -0.04 -0.71 6.33 29.10 0.18 -0.53 16 20 C 0.23 5.26 6.63 138.63 0.92 6.18 16 21 N -0.57 -12.52 11.19 -191.81 -2.15 -14.66 16 22 C 0.27 3.60 13.13 180.36 2.37 5.97 16 23 N -0.48 -6.89 7.45 -60.49 -0.45 -7.34 16 24 H 0.46 2.95 8.96 -213.10 -1.91 1.04 16 25 N -0.34 -8.00 12.80 -51.34 -0.66 -8.66 16 26 C -0.11 -3.31 5.49 30.59 0.17 -3.15 16 27 C -0.12 -4.70 5.50 30.60 0.17 -4.53 16 28 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 29 H 0.37 20.66 7.80 -92.70 -0.72 19.93 16 30 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 34 H 0.42 4.12 8.60 -92.71 -0.80 3.32 16 35 H 0.14 1.47 8.14 -2.38 -0.02 1.45 16 36 H 0.15 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.27 0.27 8.06 -2.91 -0.02 0.25 16 38 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 40 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 Total: -1.00 -86.83 344.20 -0.89 -87.72 By element: Atomic # 1 Polarization: 27.25 SS G_CDS: -2.36 Total: 24.89 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: 6.36 Total: 5.61 kcal Atomic # 7 Polarization: -139.59 SS G_CDS: -6.87 Total: -146.46 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.05 Total: -20.85 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -86.83 -0.89 -87.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034774118.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.053 kcal (2) G-P(sol) polarization free energy of solvation -86.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds