Wall clock time and date at job start Tue Mar 31 2020 03:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86805 * 120.00086 * 2 1 4 4 H 1.48506 * 109.46826 * 239.72395 * 3 2 1 5 5 H 1.48497 * 109.47051 * 359.71953 * 3 2 1 6 6 H 1.48499 * 109.47422 * 119.72203 * 3 2 1 7 7 C 1.38815 * 120.00107 * 179.71730 * 2 1 3 8 8 H 1.08000 * 119.99641 * 180.02562 * 7 2 1 9 9 N 1.36931 * 119.99715 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99939 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.47053 * 325.00795 * 10 9 7 12 12 C 1.53005 * 109.46671 * 85.00154 * 10 9 7 13 13 C 1.53006 * 109.46869 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.46900 * 299.99837 * 13 12 10 15 15 H 1.09005 * 109.47352 * 299.99982 * 14 13 12 16 16 N 1.46496 * 109.47257 * 179.97438 * 14 13 12 17 17 C 1.34782 * 119.99760 * 84.99735 * 16 14 13 18 18 O 1.21279 * 120.00189 * 0.02562 * 17 16 14 19 19 C 1.50696 * 119.99924 * 180.02562 * 17 16 14 20 20 N 1.46502 * 109.47184 * 180.02562 * 19 17 16 21 21 C 1.34434 * 126.82421 * 124.99837 * 20 19 17 22 22 N 1.30829 * 108.07713 * 179.97438 * 21 20 19 23 23 C 1.33242 * 109.82931 * 0.02562 * 22 21 20 24 24 N 1.30715 * 108.94751 * 359.75044 * 23 22 21 25 25 C 1.52998 * 109.47024 * 59.99923 * 14 13 12 26 26 C 1.52996 * 109.47719 * 299.99848 * 25 14 13 27 27 H 0.97000 * 120.00330 * 0.27723 * 1 2 3 28 28 H 0.97000 * 120.00754 * 359.97438 * 9 7 2 29 29 H 1.09003 * 109.46938 * 299.99485 * 12 10 9 30 30 H 1.08997 * 109.47471 * 60.00092 * 12 10 9 31 31 H 1.08996 * 109.47075 * 179.97438 * 13 12 10 32 32 H 1.08997 * 109.47253 * 59.99647 * 13 12 10 33 33 H 0.96994 * 120.00386 * 265.00629 * 16 14 13 34 34 H 1.09012 * 109.47166 * 300.00005 * 19 17 16 35 35 H 1.08996 * 109.47713 * 59.99624 * 19 17 16 36 36 H 1.08002 * 125.95659 * 359.97438 * 21 20 19 37 37 H 1.07998 * 125.52613 * 179.97438 * 23 22 21 38 38 H 1.09001 * 109.47056 * 179.97438 * 25 14 13 39 39 H 1.09001 * 109.46950 * 60.00599 * 25 14 13 40 40 H 1.08997 * 109.47030 * 300.00402 * 26 25 14 41 41 H 1.08996 * 109.47449 * 180.02562 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1090 1.6934 -1.2092 5 1 1.2852 2.7465 -0.0069 6 1 3.0988 1.6994 1.2159 7 6 2.0102 -1.2021 0.0059 8 1 3.0902 -1.2021 0.0063 9 7 1.3255 -2.3880 0.0113 10 6 2.0580 -3.6567 0.0169 11 1 2.9688 -3.5531 -0.5729 12 6 2.4218 -4.0290 1.4557 13 6 3.1874 -5.3538 1.4617 14 6 2.3107 -6.4521 0.8568 15 1 1.3999 -6.5562 1.4466 16 7 3.0438 -7.7204 0.8619 17 6 3.0357 -8.4991 1.9620 18 8 2.4211 -8.1500 2.9475 19 6 3.7903 -9.8035 1.9675 20 7 3.6254 -10.4576 3.2679 21 6 3.1702 -11.7026 3.4917 22 7 3.1737 -11.9101 4.7834 23 6 3.6219 -10.8254 5.4142 24 7 3.9162 -9.9104 4.5283 25 6 1.9468 -6.0797 -0.5819 26 6 1.1813 -4.7551 -0.5880 27 1 -0.4850 0.8400 -0.0041 28 1 0.3555 -2.3881 0.0113 29 1 3.0468 -3.2468 1.8865 30 1 1.5111 -4.1326 2.0456 31 1 3.4469 -5.6188 2.4866 32 1 4.0981 -5.2498 0.8719 33 1 3.5352 -7.9998 0.0736 34 1 3.4004 -10.4521 1.1828 35 1 4.8482 -9.6120 1.7882 36 1 2.8564 -12.4083 2.7367 37 1 3.7285 -10.7205 6.4838 38 1 1.3226 -6.8624 -1.0130 39 1 2.8576 -5.9759 -1.1717 40 1 0.2706 -4.8591 0.0018 41 1 0.9217 -4.4901 -1.6128 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034788295.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:30 Heat of formation + Delta-G solvation = 61.204144 kcal Electronic energy + Delta-G solvation = -22967.817821 eV Core-core repulsion = 19498.756800 eV Total energy + Delta-G solvation = -3469.061021 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -42.30849 -40.11138 -38.06390 -34.98579 -34.30967 -33.09882 -31.43355 -30.79353 -30.45502 -28.74811 -26.95734 -23.73703 -22.69788 -22.35065 -22.23176 -21.15996 -20.62103 -19.51920 -17.80300 -17.64406 -16.98141 -16.22249 -15.98894 -15.32678 -15.17105 -14.93852 -14.41074 -14.11793 -13.93127 -13.73778 -13.63424 -13.29823 -12.87829 -12.61705 -12.13090 -12.04962 -11.85983 -11.48817 -11.10369 -10.82657 -10.80770 -10.72095 -10.49060 -10.27071 -10.22470 -10.15114 -10.00580 -9.80984 -9.76798 -9.58093 -9.10273 -8.86075 -6.95182 -5.75955 -3.04632 1.35265 1.87661 2.29329 2.75157 2.88692 3.43907 3.48495 3.49404 4.01836 4.05892 4.29461 4.50914 4.58881 4.60741 4.82602 4.95669 4.99730 5.21410 5.49419 5.55003 5.63509 5.67488 5.78578 5.82903 5.92712 5.98249 6.16168 6.18212 6.19405 6.24920 6.41586 6.44901 6.52227 6.60179 6.69691 6.96208 7.12962 7.23422 7.69812 7.82222 7.95036 8.42848 9.53701 10.12063 10.46506 11.46746 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.036001 B = 0.002601 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.564827 B =10764.209080 C =11125.923842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.725 5.725 10 C 0.178 3.822 11 H 0.046 0.954 12 C -0.132 4.132 13 C -0.124 4.124 14 C 0.147 3.853 15 H 0.087 0.913 16 N -0.722 5.722 17 C 0.497 3.503 18 O -0.507 6.507 19 C 0.110 3.890 20 N -0.370 5.370 21 C 0.253 3.747 22 N -0.545 5.545 23 C 0.192 3.808 24 N -0.287 5.287 25 C -0.118 4.118 26 C -0.121 4.121 27 H 0.255 0.745 28 H 0.383 0.617 29 H 0.064 0.936 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.398 0.602 34 H 0.130 0.870 35 H 0.119 0.881 36 H 0.219 0.781 37 H 0.217 0.783 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.323 -24.896 -0.296 26.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.366 5.366 10 C 0.068 3.932 11 H 0.064 0.936 12 C -0.173 4.173 13 C -0.163 4.163 14 C 0.044 3.956 15 H 0.105 0.895 16 N -0.374 5.374 17 C 0.280 3.720 18 O -0.380 6.380 19 C -0.016 4.016 20 N -0.162 5.162 21 C -0.044 4.044 22 N -0.272 5.272 23 C -0.111 4.111 24 N -0.113 5.113 25 C -0.156 4.156 26 C -0.160 4.160 27 H 0.065 0.935 28 H 0.217 0.783 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.232 0.768 34 H 0.148 0.852 35 H 0.137 0.863 36 H 0.235 0.765 37 H 0.233 0.767 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.158 -24.019 0.702 25.376 hybrid contribution 0.361 0.780 -0.583 1.038 sum 8.519 -23.239 0.119 24.752 Atomic orbital electron populations 1.69645 1.05104 1.25750 1.57698 1.24741 0.95506 0.97673 1.03090 0.86286 0.78536 0.83656 0.77821 1.21305 1.21708 1.21294 1.19189 0.90924 0.84166 1.42670 0.91290 1.42419 1.05783 0.99789 1.88573 1.20233 0.94269 0.85990 0.92741 0.93608 1.22234 0.99777 0.94484 1.00854 1.21893 0.98536 0.95359 1.00496 1.21145 0.95391 0.81442 0.97649 0.89460 1.46085 1.53571 1.22218 1.15570 1.20381 0.82152 0.85575 0.83939 1.90832 1.41924 1.72623 1.32665 1.21603 1.03460 0.94582 0.81986 1.49988 1.48618 1.11460 1.06110 1.26069 0.96025 0.86969 0.95343 1.70523 1.24322 1.28660 1.03686 1.26043 0.97379 0.86642 1.01065 1.78235 1.23485 1.21455 0.88158 1.21746 1.00870 0.98367 0.94647 1.21755 0.98955 0.93422 1.01847 0.93474 0.78306 0.91758 0.92518 0.92345 0.92270 0.76766 0.85230 0.86349 0.76487 0.76699 0.91871 0.91482 0.91977 0.91281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.28 13.06 55.49 0.72 -27.56 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.45 29.55 -169.99 -5.02 17.42 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.24 -6.59 9.93 -15.06 -0.15 -6.74 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 N -0.73 -18.01 5.12 -53.42 -0.27 -18.28 16 10 C 0.18 3.39 2.77 -67.93 -0.19 3.21 16 11 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 12 C -0.13 -2.39 5.50 -26.73 -0.15 -2.54 16 13 C -0.12 -1.78 5.49 -26.73 -0.15 -1.93 16 14 C 0.15 1.79 2.45 -67.93 -0.17 1.63 16 15 H 0.09 1.29 7.58 -51.93 -0.39 0.89 16 16 N -0.72 -6.28 5.08 -53.81 -0.27 -6.55 16 17 C 0.50 5.19 7.83 -10.98 -0.09 5.10 16 18 O -0.51 -8.20 15.41 5.56 0.09 -8.11 16 19 C 0.11 0.65 7.03 -5.19 -0.04 0.62 16 20 N -0.37 -3.54 3.40 -63.81 -0.22 -3.76 16 21 C 0.25 2.04 12.63 -90.65 -1.14 0.89 16 22 N -0.55 -5.93 11.19 -15.83 -0.18 -6.11 16 23 C 0.19 2.14 13.03 -91.81 -1.20 0.94 16 24 N -0.29 -3.71 11.83 29.29 0.35 -3.36 16 25 C -0.12 -1.32 5.39 -26.73 -0.14 -1.46 16 26 C -0.12 -1.85 5.39 -26.73 -0.14 -2.00 16 27 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 28 H 0.38 10.16 7.80 -40.82 -0.32 9.84 16 29 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.40 1.94 8.60 -40.82 -0.35 1.59 16 34 H 0.13 0.15 8.09 -51.92 -0.42 -0.27 16 35 H 0.12 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.22 0.60 8.06 -52.49 -0.42 0.18 16 37 H 0.22 1.68 8.06 -52.49 -0.42 1.26 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 344.59 15.07 5.19 5.19 Total: -1.00 -37.92 344.59 -9.36 -47.28 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -6.10 Total: 6.62 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -3.65 Total: -2.79 kcal Atomic # 7 Polarization: -65.74 SS G_CDS: 0.13 Total: -65.61 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: 0.09 Total: -8.11 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -37.92 -9.36 -47.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034788295.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.482 kcal (2) G-P(sol) polarization free energy of solvation -37.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds