Wall clock time and date at job start Tue Mar 31 2020 03:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86805 * 120.00086 * 2 1 4 4 H 1.48506 * 109.46826 * 239.72395 * 3 2 1 5 5 H 1.48497 * 109.47051 * 359.71953 * 3 2 1 6 6 H 1.48499 * 109.47422 * 119.72203 * 3 2 1 7 7 C 1.38815 * 120.00107 * 179.71730 * 2 1 3 8 8 H 1.08000 * 119.99641 * 180.02562 * 7 2 1 9 9 N 1.36931 * 119.99715 * 0.02562 * 7 2 1 10 10 C 1.46506 * 119.99939 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.47053 * 325.00795 * 10 9 7 12 12 C 1.53005 * 109.46671 * 85.00154 * 10 9 7 13 13 C 1.53006 * 109.46869 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.46900 * 299.99837 * 13 12 10 15 15 H 1.09005 * 109.47352 * 299.99982 * 14 13 12 16 16 N 1.46496 * 109.47257 * 179.97438 * 14 13 12 17 17 C 1.34782 * 119.99760 * 84.99735 * 16 14 13 18 18 O 1.21279 * 120.00189 * 0.02562 * 17 16 14 19 19 C 1.50696 * 119.99924 * 180.02562 * 17 16 14 20 20 N 1.46502 * 109.47184 * 180.02562 * 19 17 16 21 21 C 1.34434 * 126.82421 * 124.99837 * 20 19 17 22 22 N 1.30829 * 108.07713 * 179.97438 * 21 20 19 23 23 C 1.33242 * 109.82931 * 0.02562 * 22 21 20 24 24 N 1.30715 * 108.94751 * 359.75044 * 23 22 21 25 25 C 1.52998 * 109.47024 * 59.99923 * 14 13 12 26 26 C 1.52996 * 109.47719 * 299.99848 * 25 14 13 27 27 H 0.97000 * 120.00330 * 0.27723 * 1 2 3 28 28 H 0.97000 * 120.00754 * 359.97438 * 9 7 2 29 29 H 1.09003 * 109.46938 * 299.99485 * 12 10 9 30 30 H 1.08997 * 109.47471 * 60.00092 * 12 10 9 31 31 H 1.08996 * 109.47075 * 179.97438 * 13 12 10 32 32 H 1.08997 * 109.47253 * 59.99647 * 13 12 10 33 33 H 0.96994 * 120.00386 * 265.00629 * 16 14 13 34 34 H 1.09012 * 109.47166 * 300.00005 * 19 17 16 35 35 H 1.08996 * 109.47713 * 59.99624 * 19 17 16 36 36 H 1.08002 * 125.95659 * 359.97438 * 21 20 19 37 37 H 1.07998 * 125.52613 * 179.97438 * 23 22 21 38 38 H 1.09001 * 109.47056 * 179.97438 * 25 14 13 39 39 H 1.09001 * 109.46950 * 60.00599 * 25 14 13 40 40 H 1.08997 * 109.47030 * 300.00402 * 26 25 14 41 41 H 1.08996 * 109.47449 * 180.02562 * 26 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1090 1.6934 -1.2092 5 1 1.2852 2.7465 -0.0069 6 1 3.0988 1.6994 1.2159 7 6 2.0102 -1.2021 0.0059 8 1 3.0902 -1.2021 0.0063 9 7 1.3255 -2.3880 0.0113 10 6 2.0580 -3.6567 0.0169 11 1 2.9688 -3.5531 -0.5729 12 6 2.4218 -4.0290 1.4557 13 6 3.1874 -5.3538 1.4617 14 6 2.3107 -6.4521 0.8568 15 1 1.3999 -6.5562 1.4466 16 7 3.0438 -7.7204 0.8619 17 6 3.0357 -8.4991 1.9620 18 8 2.4211 -8.1500 2.9475 19 6 3.7903 -9.8035 1.9675 20 7 3.6254 -10.4576 3.2679 21 6 3.1702 -11.7026 3.4917 22 7 3.1737 -11.9101 4.7834 23 6 3.6219 -10.8254 5.4142 24 7 3.9162 -9.9104 4.5283 25 6 1.9468 -6.0797 -0.5819 26 6 1.1813 -4.7551 -0.5880 27 1 -0.4850 0.8400 -0.0041 28 1 0.3555 -2.3881 0.0113 29 1 3.0468 -3.2468 1.8865 30 1 1.5111 -4.1326 2.0456 31 1 3.4469 -5.6188 2.4866 32 1 4.0981 -5.2498 0.8719 33 1 3.5352 -7.9998 0.0736 34 1 3.4004 -10.4521 1.1828 35 1 4.8482 -9.6120 1.7882 36 1 2.8564 -12.4083 2.7367 37 1 3.7285 -10.7205 6.4838 38 1 1.3226 -6.8624 -1.0130 39 1 2.8576 -5.9759 -1.1717 40 1 0.2706 -4.8591 0.0018 41 1 0.9217 -4.4901 -1.6128 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034788295.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:29 Heat of formation + Delta-G solvation = 34.076256 kcal Electronic energy + Delta-G solvation = -22968.994174 eV Core-core repulsion = 19498.756800 eV Total energy + Delta-G solvation = -3470.237374 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.97624 -41.03305 -39.29861 -36.41236 -34.99746 -34.63126 -32.51041 -32.13628 -31.70473 -29.80166 -28.15257 -25.57078 -23.76595 -23.42464 -22.87650 -22.34008 -21.50454 -20.86946 -19.17100 -18.44083 -18.25646 -17.16369 -16.79506 -16.73421 -16.05495 -15.93741 -15.59911 -15.39969 -15.09254 -15.02571 -14.72325 -14.61505 -14.01671 -13.70575 -13.44311 -13.17068 -13.10352 -12.81835 -12.74179 -12.45577 -12.32566 -12.18940 -12.05180 -11.68585 -11.47978 -11.30082 -11.20665 -10.99559 -10.85808 -10.75609 -10.47470 -10.06256 -9.00928 -7.94586 -5.22819 0.70961 1.35238 1.45412 1.48591 1.54457 1.54846 2.03284 2.16590 2.55657 3.38060 3.52595 3.55879 3.72452 3.78117 3.85031 3.90002 4.11467 4.19005 4.28043 4.35848 4.39142 4.44171 4.52034 4.58260 4.64143 4.85053 4.99564 5.10920 5.12251 5.24336 5.25995 5.27421 5.45200 5.47833 5.52372 5.54097 5.62208 5.91502 6.28158 6.56044 7.14182 7.26497 7.33426 8.11458 8.33339 9.28973 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.036001 B = 0.002601 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.564827 B =10764.209080 C =11125.923842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.079 4.079 3 Si 0.971 3.029 4 H -0.274 1.274 5 H -0.297 1.297 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.075 0.925 9 N -0.740 5.740 10 C 0.173 3.827 11 H 0.050 0.950 12 C -0.124 4.124 13 C -0.111 4.111 14 C 0.156 3.844 15 H 0.057 0.943 16 N -0.702 5.702 17 C 0.492 3.508 18 O -0.573 6.573 19 C 0.112 3.888 20 N -0.378 5.378 21 C 0.264 3.736 22 N -0.579 5.579 23 C 0.182 3.818 24 N -0.340 5.340 25 C -0.103 4.103 26 C -0.115 4.115 27 H 0.250 0.750 28 H 0.371 0.629 29 H 0.037 0.963 30 H 0.033 0.967 31 H 0.040 0.960 32 H 0.079 0.921 33 H 0.423 0.577 34 H 0.189 0.811 35 H 0.145 0.855 36 H 0.271 0.729 37 H 0.231 0.769 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.049 0.951 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.115 -27.463 -2.601 29.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.271 4.271 3 Si 0.800 3.200 4 H -0.200 1.200 5 H -0.223 1.223 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.093 0.907 9 N -0.379 5.379 10 C 0.065 3.935 11 H 0.068 0.932 12 C -0.165 4.165 13 C -0.151 4.151 14 C 0.051 3.949 15 H 0.076 0.924 16 N -0.356 5.356 17 C 0.277 3.723 18 O -0.451 6.451 19 C -0.012 4.012 20 N -0.169 5.169 21 C -0.031 4.031 22 N -0.306 5.306 23 C -0.121 4.121 24 N -0.167 5.167 25 C -0.141 4.141 26 C -0.154 4.154 27 H 0.059 0.941 28 H 0.202 0.798 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.098 0.902 33 H 0.262 0.738 34 H 0.207 0.793 35 H 0.163 0.837 36 H 0.286 0.714 37 H 0.247 0.753 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.067 0.933 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.025 -26.639 -1.660 28.512 hybrid contribution -0.186 1.513 0.130 1.530 sum 9.839 -25.127 -1.529 27.028 Atomic orbital electron populations 1.69808 1.06618 1.26022 1.59800 1.25560 0.96371 1.01099 1.04083 0.85247 0.77219 0.79364 0.78174 1.20000 1.22287 1.20818 1.19589 0.91377 0.85345 1.40640 0.90705 1.42684 1.05440 1.01216 1.88581 1.20497 0.94661 0.85061 0.93281 0.93190 1.22045 0.98763 0.96056 0.99642 1.21748 0.99147 0.93971 1.00189 1.20768 0.94090 0.82335 0.97739 0.92438 1.45777 1.52920 1.20502 1.16387 1.21251 0.81236 0.86863 0.82915 1.90824 1.44839 1.74344 1.35073 1.22028 1.04489 0.92854 0.81841 1.50172 1.48573 1.12029 1.06111 1.27070 0.93605 0.86977 0.95475 1.70517 1.25678 1.29077 1.05370 1.26437 0.97043 0.86649 1.01938 1.78128 1.25359 1.23165 0.90015 1.21641 1.01912 0.96444 0.94084 1.21652 0.98310 0.94404 1.01016 0.94115 0.79786 0.94447 0.94785 0.94159 0.90209 0.73821 0.79343 0.83719 0.71365 0.75315 0.88839 0.88921 0.93257 0.91261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.43 13.06 21.65 0.28 -60.15 16 2 C -0.08 -4.61 5.50 84.86 0.47 -4.14 16 3 Si 0.97 46.70 29.55 68.60 2.03 48.72 16 4 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 5 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 6 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 7 C -0.24 -13.30 9.93 84.04 0.83 -12.46 16 8 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 9 N -0.74 -37.60 5.12 -322.93 -1.65 -39.25 16 10 C 0.17 6.61 2.77 44.99 0.12 6.73 16 11 H 0.05 1.88 8.08 -2.39 -0.02 1.86 16 12 C -0.12 -4.62 5.50 30.60 0.17 -4.45 16 13 C -0.11 -3.13 5.49 30.60 0.17 -2.96 16 14 C 0.16 3.50 2.45 44.99 0.11 3.61 16 15 H 0.06 1.69 7.58 -2.38 -0.02 1.67 16 16 N -0.70 -9.75 5.08 -442.54 -2.25 -12.00 16 17 C 0.49 9.08 7.83 87.65 0.69 9.76 16 18 O -0.57 -18.52 15.41 -3.03 -0.05 -18.57 16 19 C 0.11 0.85 7.03 85.63 0.60 1.45 16 20 N -0.38 -6.29 3.40 -355.79 -1.21 -7.50 16 21 C 0.26 3.47 12.63 180.36 2.28 5.75 16 22 N -0.58 -11.93 11.19 -204.00 -2.28 -14.21 16 23 C 0.18 4.09 13.03 180.76 2.36 6.44 16 24 N -0.34 -8.70 11.83 -61.24 -0.72 -9.42 16 25 C -0.10 -1.94 5.39 30.59 0.16 -1.78 16 26 C -0.11 -3.40 5.39 30.59 0.16 -3.23 16 27 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 28 H 0.37 20.38 7.80 -92.71 -0.72 19.66 16 29 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.42 1.82 8.60 -92.71 -0.80 1.02 16 34 H 0.19 -0.85 8.09 -2.38 -0.02 -0.86 16 35 H 0.15 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.27 0.08 8.06 -2.91 -0.02 0.06 16 37 H 0.23 3.78 8.06 -2.91 -0.02 3.76 16 38 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -89.23 344.59 1.80 -87.43 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: -0.47 Total: 20.22 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: 8.12 Total: 4.73 kcal Atomic # 7 Polarization: -134.70 SS G_CDS: -7.84 Total: -142.53 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.05 Total: -18.57 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.72 kcal Total: -89.23 1.80 -87.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034788295.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.504 kcal (2) G-P(sol) polarization free energy of solvation -89.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds