Wall clock time and date at job start Tue Mar 31 2020 03:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.35539 * 125.67620 * 2 1 4 4 C 1.35456 * 108.86994 * 180.13773 * 3 2 1 5 5 C 1.39834 * 107.86354 * 359.60493 * 4 3 2 6 6 C 1.37648 * 125.67952 * 179.69514 * 2 1 3 7 7 C 1.46679 * 126.23250 * 0.02562 * 6 2 1 8 8 O 1.21687 * 119.99882 * 354.31710 * 7 6 2 9 9 N 1.34782 * 119.99626 * 174.32145 * 7 6 2 10 10 C 1.46497 * 119.99391 * 185.06742 * 9 7 6 11 11 C 1.52999 * 109.47138 * 179.97438 * 10 9 7 12 12 H 1.09006 * 109.51216 * 59.99624 * 11 10 9 13 13 C 1.53295 * 109.51788 * 180.09789 * 11 10 9 14 14 N 1.47151 * 108.38772 * 172.22169 * 13 11 10 15 15 C 1.36941 * 120.97763 * 129.48747 * 14 13 11 16 16 H 1.07997 * 119.99978 * 332.87141 * 15 14 13 17 17 C 1.38811 * 119.99552 * 152.87926 * 15 14 13 18 18 N 1.31621 * 120.00053 * 331.81664 * 17 15 14 19 19 Si 1.86800 * 119.99947 * 151.82473 * 17 15 14 20 20 H 1.48509 * 109.46921 * 94.98547 * 19 17 15 21 21 H 1.48502 * 109.47060 * 214.98249 * 19 17 15 22 22 H 1.48496 * 109.47259 * 334.98598 * 19 17 15 23 23 C 1.47149 * 118.03919 * 309.47236 * 14 13 11 24 24 C 1.53299 * 108.38365 * 50.52847 * 23 14 13 25 25 O 1.42955 * 109.26672 * 307.72338 * 24 23 14 26 26 H 1.08998 * 109.47224 * 268.71092 * 1 2 3 27 27 H 1.09010 * 109.47514 * 28.71078 * 1 2 3 28 28 H 1.08996 * 109.47277 * 148.70863 * 1 2 3 29 29 H 1.07998 * 125.56650 * 0.02562 * 3 2 1 30 30 H 1.08001 * 126.06258 * 179.87003 * 4 3 2 31 31 H 1.07996 * 126.45382 * 180.24207 * 5 4 3 32 32 H 0.96999 * 120.00306 * 5.06451 * 9 7 6 33 33 H 1.09005 * 109.47415 * 299.99656 * 10 9 7 34 34 H 1.08998 * 109.47488 * 59.99623 * 10 9 7 35 35 H 1.08994 * 109.68114 * 291.95272 * 13 11 10 36 36 H 1.09008 * 109.67760 * 52.46277 * 13 11 10 37 37 H 0.97000 * 119.99789 * 180.02562 * 18 17 15 38 38 H 1.08995 * 109.68339 * 170.25367 * 23 14 13 39 39 H 1.09002 * 109.67639 * 290.77079 * 23 14 13 40 40 H 1.08999 * 109.51181 * 67.62636 * 24 23 14 41 41 H 1.09006 * 109.51022 * 187.77861 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2554 1.1010 0.0000 4 6 3.5521 0.7094 -0.0031 5 6 3.5779 -0.6887 0.0041 6 6 2.2678 -1.1181 0.0059 7 6 1.8124 -2.5124 0.0128 8 8 0.6266 -2.7646 0.1180 9 7 2.7074 -3.5141 -0.0973 10 6 2.2456 -4.9005 -0.2022 11 6 3.4533 -5.8330 -0.3158 12 1 4.0809 -5.7253 0.5689 13 6 2.9712 -7.2838 -0.4281 14 7 4.1329 -8.1374 -0.7234 15 6 4.3868 -9.2624 0.0150 16 1 4.0507 -9.3231 1.0395 17 6 5.0764 -10.3246 -0.5535 18 7 5.0107 -10.5326 -1.8515 19 14 6.0973 -11.4589 0.5238 20 1 5.2880 -12.6462 0.8989 21 1 7.3034 -11.8979 -0.2232 22 1 6.5121 -10.7345 1.7519 23 6 5.0135 -7.7466 -1.8356 24 6 5.3961 -6.2732 -1.6547 25 8 4.2092 -5.4955 -1.4814 26 1 -0.3633 -0.0231 1.0274 27 1 -0.3634 0.9014 -0.4937 28 1 -0.3633 -0.8781 -0.5337 29 1 1.9081 2.1236 0.0004 30 1 4.4131 1.3613 -0.0058 31 1 4.4583 -1.3142 0.0075 32 1 3.6571 -3.3171 -0.1071 33 1 1.6685 -5.1594 0.6855 34 1 1.6189 -5.0087 -1.0874 35 1 2.5176 -7.5938 0.5132 36 1 2.2403 -7.3665 -1.2325 37 1 5.4923 -11.2751 -2.2486 38 1 5.9124 -8.3630 -1.8263 39 1 4.4890 -7.8767 -2.7822 40 1 6.0315 -6.1673 -0.7754 41 1 5.9334 -5.9255 -2.5371 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035294834.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:08 Heat of formation + Delta-G solvation = -26.523171 kcal Electronic energy + Delta-G solvation = -23357.882905 eV Core-core repulsion = 19852.724991 eV Total energy + Delta-G solvation = -3505.157914 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.28258 -40.52957 -39.70058 -36.52232 -35.84559 -33.82533 -33.36314 -32.49456 -30.43007 -29.06870 -27.35711 -27.09313 -24.98930 -23.98055 -22.94428 -21.61735 -21.35288 -20.46937 -19.00230 -18.73394 -17.55304 -17.15842 -16.96228 -16.58126 -16.49274 -16.19169 -15.56809 -15.51703 -15.35172 -15.00187 -14.68988 -14.55164 -14.29574 -14.09066 -13.72995 -13.23723 -13.20747 -13.16452 -13.11748 -12.87734 -12.63210 -12.58720 -12.24128 -12.09899 -11.87318 -11.34105 -11.10543 -10.84144 -10.48991 -10.21315 -9.66417 -9.15165 -8.80448 -7.96985 -5.36951 0.48785 1.44736 1.48288 1.58894 1.67804 1.85706 2.34786 2.39583 2.49992 2.76594 3.15428 3.47083 3.77279 3.96420 4.00351 4.04881 4.21700 4.23895 4.39217 4.45622 4.49053 4.51239 4.57907 4.59774 4.71088 4.73123 4.75409 4.86467 5.03897 5.16178 5.19504 5.29692 5.32782 5.45450 5.62561 5.83515 6.02336 6.23621 6.28957 6.35245 6.51171 7.02139 7.13518 7.72090 8.28056 9.09162 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.035618 B = 0.002958 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.926334 B = 9463.279535 C = 9751.625900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.422 5.422 3 C 0.024 3.976 4 C -0.222 4.222 5 C -0.138 4.138 6 C -0.090 4.090 7 C 0.583 3.417 8 O -0.589 6.589 9 N -0.700 5.700 10 C 0.145 3.855 11 C 0.080 3.920 12 H 0.072 0.928 13 C 0.117 3.883 14 N -0.610 5.610 15 C -0.277 4.277 16 H 0.070 0.930 17 C -0.041 4.041 18 N -0.925 5.925 19 Si 0.961 3.039 20 H -0.286 1.286 21 H -0.290 1.290 22 H -0.267 1.267 23 C 0.143 3.857 24 C 0.056 3.944 25 O -0.388 6.388 26 H 0.079 0.921 27 H 0.116 0.884 28 H 0.075 0.925 29 H 0.206 0.794 30 H 0.165 0.835 31 H 0.156 0.844 32 H 0.415 0.585 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.016 0.984 37 H 0.253 0.747 38 H 0.055 0.945 39 H 0.001 0.999 40 H 0.055 0.945 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.651 24.121 3.939 24.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.095 5.095 3 C -0.112 4.112 4 C -0.245 4.245 5 C -0.165 4.165 6 C -0.203 4.203 7 C 0.373 3.627 8 O -0.472 6.472 9 N -0.351 5.351 10 C 0.020 3.980 11 C 0.021 3.979 12 H 0.090 0.910 13 C -0.010 4.010 14 N -0.335 5.335 15 C -0.407 4.407 16 H 0.088 0.912 17 C -0.238 4.238 18 N -0.569 5.569 19 Si 0.788 3.212 20 H -0.213 1.213 21 H -0.216 1.216 22 H -0.192 1.192 23 C 0.018 3.982 24 C -0.022 4.022 25 O -0.307 6.307 26 H 0.097 0.903 27 H 0.134 0.866 28 H 0.094 0.906 29 H 0.222 0.778 30 H 0.183 0.817 31 H 0.174 0.826 32 H 0.251 0.749 33 H 0.108 0.892 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.034 0.966 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.019 0.981 40 H 0.073 0.927 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.882 23.884 3.772 24.490 hybrid contribution 0.828 -1.485 0.202 1.712 sum -3.054 22.399 3.974 22.953 Atomic orbital electron populations 1.22309 0.75366 1.05407 1.04275 1.44117 1.07562 1.05048 1.52738 1.22722 0.90495 0.92441 1.05499 1.21208 0.97221 0.94613 1.11453 1.21711 0.94243 0.96709 1.03826 1.20004 0.91641 0.87200 1.21463 1.17304 0.85152 0.84507 0.75745 1.90748 1.17718 1.85596 1.53140 1.45431 1.10523 1.05550 1.73621 1.21220 0.94964 0.79221 1.02554 1.22640 0.92609 0.93845 0.88834 0.91048 1.21596 0.89715 0.90190 0.99470 1.44373 1.26085 1.25910 1.37088 1.19422 1.34512 0.93346 0.93380 0.91236 1.25744 1.03232 0.98103 0.96720 1.70320 1.42981 1.31232 1.12328 0.85384 0.78493 0.78544 0.78738 1.21318 1.21597 1.19178 1.21248 0.94250 0.93667 0.89077 1.23136 0.86231 0.90841 1.01982 1.87805 1.37915 1.59764 1.45261 0.90281 0.86598 0.90628 0.77754 0.81721 0.82641 0.74862 0.89200 0.91861 0.90973 0.96578 0.93832 0.92630 0.98102 0.92663 0.87025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.09 10.48 127.77 1.34 2.43 16 2 N -0.42 -8.54 3.16 -534.32 -1.69 -10.23 16 3 C 0.02 0.36 11.38 83.48 0.95 1.31 16 4 C -0.22 -3.58 10.81 22.01 0.24 -3.35 16 5 C -0.14 -2.80 10.35 22.57 0.23 -2.56 16 6 C -0.09 -2.23 6.88 40.35 0.28 -1.95 16 7 C 0.58 17.05 7.77 86.45 0.67 17.72 16 8 O -0.59 -20.42 14.79 -4.31 -0.06 -20.49 16 9 N -0.70 -18.76 5.43 -467.08 -2.54 -21.30 16 10 C 0.14 4.28 5.37 86.38 0.46 4.75 16 11 C 0.08 2.67 2.86 30.69 0.09 2.76 16 12 H 0.07 2.28 8.14 -2.38 -0.02 2.26 16 13 C 0.12 4.83 6.02 86.35 0.52 5.35 16 14 N -0.61 -30.48 3.04 -697.55 -2.12 -32.59 16 15 C -0.28 -15.09 9.54 84.03 0.80 -14.28 16 16 H 0.07 3.68 7.97 -2.91 -0.02 3.66 16 17 C -0.04 -2.25 4.61 84.86 0.39 -1.86 16 18 N -0.92 -54.46 12.00 21.65 0.26 -54.20 16 19 Si 0.96 43.80 29.64 68.60 2.03 45.83 16 20 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 21 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 22 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 23 C 0.14 6.76 5.55 86.36 0.48 7.24 16 24 C 0.06 1.99 6.98 72.08 0.50 2.49 16 25 O -0.39 -13.61 10.14 -148.98 -1.51 -15.12 16 26 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.12 1.00 8.14 -2.38 -0.02 0.99 16 28 H 0.07 1.64 6.55 -2.39 -0.02 1.63 16 29 H 0.21 1.27 8.06 -2.91 -0.02 1.25 16 30 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 31 H 0.16 2.60 7.45 -2.91 -0.02 2.58 16 32 H 0.41 9.57 7.26 -92.71 -0.67 8.90 16 33 H 0.09 2.55 8.14 -2.38 -0.02 2.53 16 34 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.07 2.84 7.96 -2.39 -0.02 2.82 16 36 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 37 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 38 H 0.06 2.86 6.58 -2.39 -0.02 2.85 16 39 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 40 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.11 3.35 8.14 -2.38 -0.02 3.33 16 Total: -1.00 -71.48 339.60 1.69 -69.79 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: 0.36 Total: 18.27 kcal Atomic # 6 Polarization: 13.08 SS G_CDS: 6.96 Total: 20.04 kcal Atomic # 7 Polarization: -112.24 SS G_CDS: -6.09 Total: -118.32 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: -1.57 Total: -35.60 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -71.48 1.69 -69.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035294834.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.266 kcal (2) G-P(sol) polarization free energy of solvation -71.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds