Wall clock time and date at job start Tue Mar 31 2020 03:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36450 * 124.84993 * 2 1 4 4 C 1.34487 * 108.85352 * 179.68905 * 3 2 1 5 5 C 1.46686 * 106.33209 * 0.43580 * 4 3 2 6 6 C 1.47263 * 126.94094 * 179.82734 * 5 4 3 7 7 O 1.21625 * 120.00097 * 179.68372 * 6 5 4 8 8 N 1.34783 * 119.99857 * 359.69021 * 6 5 4 9 9 C 1.46501 * 119.99965 * 179.97438 * 8 6 5 10 10 C 1.52994 * 109.47195 * 179.97438 * 9 8 6 11 11 H 1.08997 * 109.51228 * 304.90238 * 10 9 8 12 12 C 1.52874 * 109.62721 * 184.90811 * 10 9 8 13 13 N 1.47146 * 108.61038 * 187.90024 * 12 10 9 14 14 C 1.36938 * 120.98166 * 230.49961 * 13 12 10 15 15 H 1.08000 * 120.00437 * 26.46046 * 14 13 12 16 16 C 1.38817 * 120.00106 * 206.45559 * 14 13 12 17 17 N 1.31620 * 119.99788 * 16.42248 * 16 14 13 18 18 Si 1.86802 * 119.99867 * 196.14101 * 16 14 13 19 19 H 1.48493 * 109.47220 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.46793 * 120.00703 * 18 16 14 21 21 H 1.48501 * 109.47003 * 240.00077 * 18 16 14 22 22 C 1.47152 * 118.03553 * 50.22601 * 13 12 10 23 23 C 1.53291 * 108.38463 * 309.71610 * 22 13 12 24 24 O 1.42958 * 109.22268 * 52.30270 * 23 22 13 25 25 C 1.34656 * 124.84931 * 179.97438 * 2 1 3 26 26 H 1.09007 * 109.47171 * 270.02252 * 1 2 3 27 27 H 1.08996 * 109.47337 * 30.02518 * 1 2 3 28 28 H 1.09000 * 109.46984 * 150.02753 * 1 2 3 29 29 H 1.07996 * 125.56995 * 359.97438 * 3 2 1 30 30 H 1.07997 * 126.82908 * 180.26707 * 4 3 2 31 31 H 0.97002 * 119.99921 * 359.97438 * 8 6 5 32 32 H 1.09002 * 109.46907 * 59.99826 * 9 8 6 33 33 H 1.08995 * 109.47254 * 300.00014 * 9 8 6 34 34 H 1.09004 * 109.61801 * 68.08073 * 12 10 9 35 35 H 1.09002 * 109.52448 * 307.66775 * 12 10 9 36 36 H 0.96997 * 119.99644 * 179.97438 * 17 16 14 37 37 H 1.08995 * 109.68009 * 69.44637 * 22 13 12 38 38 H 1.08998 * 109.67837 * 189.95158 * 22 13 12 39 39 H 1.09002 * 109.50962 * 172.22809 * 23 22 13 40 40 H 1.08996 * 109.51452 * 292.32644 * 23 22 13 41 41 H 1.08000 * 125.80396 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2447 1.1198 0.0000 4 6 3.5375 0.7492 0.0069 5 6 3.5461 -0.7176 0.0008 6 6 4.7283 -1.5957 0.0013 7 8 4.5885 -2.8039 0.0015 8 7 5.9653 -1.0605 0.0016 9 6 7.1414 -1.9340 0.0027 10 6 8.4109 -1.0802 0.0022 11 1 8.3851 -0.3900 -0.8411 12 6 9.6377 -1.9841 -0.1199 13 7 10.8452 -1.1655 0.0724 14 6 11.8810 -1.2162 -0.8218 15 1 11.6942 -1.4896 -1.8498 16 6 13.1714 -0.9161 -0.4071 17 7 13.4632 -0.9005 0.8762 18 14 14.4953 -0.5420 -1.6707 19 1 13.9162 -0.6300 -3.0353 20 1 15.0226 0.8276 -1.4445 21 1 15.5996 -1.5259 -1.5367 22 6 10.9041 -0.2861 1.2508 23 6 9.6134 0.5392 1.3032 24 8 8.4890 -0.3400 1.2228 25 6 2.2344 -1.1051 0.0005 26 1 -0.3634 0.0004 1.0277 27 1 -0.3634 0.8897 -0.5142 28 1 -0.3633 -0.8902 -0.5134 29 1 1.8828 2.1373 -0.0004 30 1 4.3980 1.4017 0.0127 31 1 6.0768 -0.0969 0.0011 32 1 7.1271 -2.5637 -0.8870 33 1 7.1263 -2.5627 0.8929 34 1 9.6582 -2.4417 -1.1091 35 1 9.5953 -2.7609 0.6436 36 1 14.3649 -0.6912 1.1660 37 1 10.9915 -0.8889 2.1547 38 1 11.7633 0.3797 1.1693 39 1 9.5746 1.0952 2.2400 40 1 9.5924 1.2359 0.4653 41 1 1.8767 -2.1241 0.0006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035326606.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:10 Heat of formation + Delta-G solvation = -27.807314 kcal Electronic energy + Delta-G solvation = -23066.023635 eV Core-core repulsion = 19560.810037 eV Total energy + Delta-G solvation = -3505.213598 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.09394 -40.53415 -39.70428 -36.48076 -35.69952 -33.76530 -33.29594 -32.23349 -30.12256 -29.28481 -27.89498 -26.62553 -24.98850 -23.84338 -22.88529 -21.58461 -20.98276 -20.46447 -18.99196 -18.74018 -17.52277 -17.06235 -16.94772 -16.56923 -16.31728 -16.10781 -15.61093 -15.48336 -15.30150 -14.99677 -14.78704 -14.55625 -14.16443 -13.87675 -13.70304 -13.27856 -13.21559 -13.03666 -12.99469 -12.89845 -12.69184 -12.50440 -12.16388 -12.04660 -11.86832 -11.33789 -10.99985 -10.79332 -10.54838 -10.11734 -9.47947 -9.25583 -8.75424 -7.91169 -5.39159 0.79852 1.46499 1.47990 1.55875 1.59113 1.94116 2.40286 2.52294 2.61761 2.80141 3.23966 3.49484 3.95447 4.02214 4.04375 4.08375 4.12205 4.25880 4.36604 4.49145 4.50370 4.53876 4.62047 4.64123 4.72283 4.77913 4.79321 4.90039 5.04927 5.06472 5.17529 5.24476 5.47220 5.55643 5.61261 5.79657 6.09923 6.26372 6.33613 6.38689 6.69253 7.06135 7.35080 7.73772 8.27972 9.15262 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.036946 B = 0.002755 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.677217 B =10160.921814 C =10326.875411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.443 5.443 3 C -0.008 4.008 4 C -0.186 4.186 5 C -0.268 4.268 6 C 0.584 3.416 7 O -0.602 6.602 8 N -0.709 5.709 9 C 0.142 3.858 10 C 0.081 3.919 11 H 0.069 0.931 12 C 0.117 3.883 13 N -0.613 5.613 14 C -0.265 4.265 15 H 0.073 0.927 16 C -0.052 4.052 17 N -0.937 5.937 18 Si 0.973 3.027 19 H -0.265 1.265 20 H -0.287 1.287 21 H -0.293 1.293 22 C 0.143 3.857 23 C 0.053 3.947 24 O -0.390 6.390 25 C 0.069 3.931 26 H 0.087 0.913 27 H 0.108 0.892 28 H 0.096 0.904 29 H 0.202 0.798 30 H 0.155 0.845 31 H 0.411 0.589 32 H 0.086 0.914 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.017 0.983 36 H 0.252 0.748 37 H -0.002 1.002 38 H 0.068 0.932 39 H 0.109 0.891 40 H 0.052 0.948 41 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.437 7.525 -2.363 27.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.118 5.118 3 C -0.135 4.135 4 C -0.210 4.210 5 C -0.278 4.278 6 C 0.375 3.625 7 O -0.486 6.486 8 N -0.359 5.359 9 C 0.018 3.982 10 C 0.022 3.978 11 H 0.087 0.913 12 C -0.010 4.010 13 N -0.338 5.338 14 C -0.395 4.395 15 H 0.090 0.910 16 C -0.247 4.247 17 N -0.582 5.582 18 Si 0.801 3.199 19 H -0.189 1.189 20 H -0.213 1.213 21 H -0.220 1.220 22 C 0.018 3.982 23 C -0.024 4.024 24 O -0.309 6.309 25 C -0.069 4.069 26 H 0.106 0.894 27 H 0.127 0.873 28 H 0.115 0.885 29 H 0.219 0.781 30 H 0.173 0.827 31 H 0.248 0.752 32 H 0.104 0.896 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.035 0.965 36 H 0.061 0.939 37 H 0.016 0.984 38 H 0.087 0.913 39 H 0.127 0.873 40 H 0.070 0.930 41 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -26.871 6.729 -2.163 27.785 hybrid contribution 1.679 0.204 -0.342 1.725 sum -25.192 6.932 -2.505 26.248 Atomic orbital electron populations 1.22456 0.74163 1.06375 1.04897 1.43936 1.08399 1.05096 1.54334 1.22290 0.89917 0.92632 1.08667 1.22292 0.97858 0.92161 1.08683 1.20362 0.92290 0.94457 1.20690 1.17846 0.83207 0.86847 0.74579 1.90716 1.87289 1.16555 1.53996 1.45602 1.04623 1.10945 1.74773 1.21152 0.82279 0.92321 1.02472 1.22542 0.93849 0.93823 0.87628 0.91315 1.21510 0.86691 0.92780 0.99969 1.44338 1.16106 1.46367 1.26953 1.19589 0.86539 1.42725 0.90623 0.90964 1.25864 0.99157 1.01964 0.97704 1.70201 1.19711 1.53287 1.15045 0.85124 0.78669 0.77107 0.79027 1.18917 1.21330 1.22044 1.21312 0.96324 0.92755 0.87851 1.23167 0.85639 0.91446 1.02162 1.87818 1.46582 1.57985 1.38550 1.21914 0.89692 0.92822 1.02442 0.89450 0.87346 0.88542 0.78102 0.82749 0.75246 0.89569 0.92242 0.90904 0.96515 0.93922 0.98372 0.91349 0.87307 0.92961 0.80340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.25 11.03 127.77 1.41 1.66 16 2 N -0.44 -6.01 3.09 -547.90 -1.69 -7.70 16 3 C -0.01 -0.11 11.34 83.12 0.94 0.83 16 4 C -0.19 -3.59 10.56 23.62 0.25 -3.34 16 5 C -0.27 -6.78 6.29 -19.04 -0.12 -6.90 16 6 C 0.58 18.62 7.81 86.62 0.68 19.30 16 7 O -0.60 -23.36 16.91 -4.11 -0.07 -23.43 16 8 N -0.71 -20.86 5.50 -466.53 -2.57 -23.42 16 9 C 0.14 4.61 5.35 86.38 0.46 5.07 16 10 C 0.08 2.88 2.80 30.55 0.09 2.96 16 11 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 12 C 0.12 5.01 6.00 86.21 0.52 5.53 16 13 N -0.61 -31.43 3.05 -698.37 -2.13 -33.56 16 14 C -0.27 -14.60 9.65 84.03 0.81 -13.79 16 15 H 0.07 3.84 7.88 -2.91 -0.02 3.82 16 16 C -0.05 -2.88 4.95 84.86 0.42 -2.46 16 17 N -0.94 -55.53 11.15 21.65 0.24 -55.29 16 18 Si 0.97 44.56 29.58 68.60 2.03 46.59 16 19 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 20 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 21 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 22 C 0.14 7.03 5.44 86.35 0.47 7.50 16 23 C 0.05 2.02 6.98 72.08 0.50 2.53 16 24 O -0.39 -14.63 10.33 -148.98 -1.54 -16.17 16 25 C 0.07 1.40 11.12 83.92 0.93 2.33 16 26 H 0.09 0.20 8.14 -2.38 -0.02 0.18 16 27 H 0.11 -0.01 8.13 -2.39 -0.02 -0.03 16 28 H 0.10 0.22 8.13 -2.39 -0.02 0.20 16 29 H 0.20 1.19 8.06 -2.91 -0.02 1.17 16 30 H 0.15 2.54 7.70 -2.91 -0.02 2.51 16 31 H 0.41 10.49 7.60 -92.71 -0.70 9.78 16 32 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 33 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.07 2.95 7.96 -2.38 -0.02 2.93 16 35 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 37 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 38 H 0.07 3.69 6.16 -2.39 -0.01 3.67 16 39 H 0.11 3.52 8.14 -2.39 -0.02 3.50 16 40 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.18 3.26 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -75.47 343.36 1.96 -73.51 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 0.33 Total: 18.27 kcal Atomic # 6 Polarization: 13.84 SS G_CDS: 7.36 Total: 21.21 kcal Atomic # 7 Polarization: -113.83 SS G_CDS: -6.15 Total: -119.97 kcal Atomic # 8 Polarization: -37.99 SS G_CDS: -1.61 Total: -39.60 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -75.47 1.96 -73.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035326606.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.699 kcal (2) G-P(sol) polarization free energy of solvation -75.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds