Wall clock time and date at job start Tue Mar 31 2020 03:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36451 * 124.85144 * 2 1 4 4 C 1.34488 * 108.85750 * 179.77326 * 3 2 1 5 5 C 1.46695 * 106.32923 * 0.37662 * 4 3 2 6 6 C 1.47258 * 126.93805 * 179.89260 * 5 4 3 7 7 O 1.21630 * 119.99651 * 179.67962 * 6 5 4 8 8 N 1.34772 * 120.00528 * 359.68249 * 6 5 4 9 9 C 1.46504 * 120.00436 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47280 * 180.02562 * 9 8 6 11 11 H 1.09002 * 109.51201 * 59.89796 * 10 9 8 12 12 C 1.53293 * 109.51285 * 180.02562 * 10 9 8 13 13 N 1.47159 * 108.38381 * 172.27774 * 12 10 9 14 14 C 1.36936 * 120.98024 * 129.44415 * 13 12 10 15 15 H 1.08000 * 120.00115 * 333.74322 * 14 13 12 16 16 C 1.38811 * 119.99830 * 154.03233 * 14 13 12 17 17 N 1.31624 * 119.99652 * 342.94501 * 16 14 13 18 18 Si 1.86796 * 119.99994 * 162.94681 * 16 14 13 19 19 H 1.48503 * 109.46909 * 59.99935 * 18 16 14 20 20 H 1.48503 * 109.46731 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47337 * 299.99701 * 18 16 14 22 22 C 1.47149 * 118.03131 * 309.71026 * 13 12 10 23 23 C 1.52880 * 108.60741 * 50.23246 * 22 13 12 24 24 O 1.42955 * 109.29916 * 307.92939 * 23 22 13 25 25 C 1.34662 * 124.85216 * 180.02562 * 2 1 3 26 26 H 1.08990 * 109.47145 * 269.97726 * 1 2 3 27 27 H 1.09000 * 109.46976 * 29.97816 * 1 2 3 28 28 H 1.08998 * 109.47164 * 149.97213 * 1 2 3 29 29 H 1.08005 * 125.57014 * 0.05457 * 3 2 1 30 30 H 1.07998 * 126.83872 * 180.25542 * 4 3 2 31 31 H 0.97005 * 120.00096 * 0.02562 * 8 6 5 32 32 H 1.08997 * 109.46708 * 60.00084 * 9 8 6 33 33 H 1.08996 * 109.47135 * 300.00021 * 9 8 6 34 34 H 1.08995 * 109.68281 * 52.55125 * 12 10 9 35 35 H 1.08995 * 109.67979 * 291.99759 * 12 10 9 36 36 H 0.96999 * 119.99599 * 180.02562 * 17 16 14 37 37 H 1.09003 * 109.67594 * 170.00813 * 22 13 12 38 38 H 1.08997 * 109.68775 * 290.56610 * 22 13 12 39 39 H 1.09007 * 109.58279 * 187.91519 * 23 22 13 40 40 H 1.09006 * 109.40847 * 67.84130 * 23 22 13 41 41 H 1.07997 * 125.79632 * 359.95474 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2448 1.1198 0.0000 4 6 3.5376 0.7492 0.0050 5 6 3.5462 -0.7177 -0.0009 6 6 4.7284 -1.5957 -0.0007 7 8 4.5885 -2.8040 -0.0001 8 7 5.9653 -1.0606 -0.0010 9 6 7.1414 -1.9342 -0.0002 10 6 8.4110 -1.0803 -0.0002 11 1 8.4252 -0.4491 0.8884 12 6 9.6422 -1.9935 -0.0001 13 7 10.8394 -1.1585 -0.1877 14 6 11.9149 -1.2695 0.6525 15 1 11.7757 -1.6200 1.6646 16 6 13.1833 -0.9258 0.2054 17 7 13.4197 -0.8192 -1.0851 18 14 14.5546 -0.6146 1.4350 19 1 14.7794 -1.8382 2.2459 20 1 15.8020 -0.2671 0.7078 21 1 14.1729 0.5082 2.3286 22 6 10.8440 -0.1966 -1.3012 23 6 9.5563 0.6253 -1.2413 24 8 8.4348 -0.2583 -1.1697 25 6 2.2345 -1.1051 -0.0005 26 1 -0.3633 -0.0004 1.0276 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3633 -0.8897 -0.5143 29 1 1.8828 2.1374 0.0008 30 1 4.3982 1.4017 0.0102 31 1 6.0769 -0.0970 -0.0010 32 1 7.1267 -2.5640 -0.8897 33 1 7.1267 -2.5626 0.8902 34 1 9.5654 -2.7135 -0.8148 35 1 9.7080 -2.5208 0.9516 36 1 14.3061 -0.5794 -1.3975 37 1 11.7052 0.4654 -1.2108 38 1 10.8902 -0.7325 -2.2492 39 1 9.4759 1.2441 -2.1351 40 1 9.5744 1.2630 -0.3574 41 1 1.8767 -2.1240 -0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035326607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:15 Heat of formation + Delta-G solvation = -3.770872 kcal Electronic energy + Delta-G solvation = -23077.651900 eV Core-core repulsion = 19573.480600 eV Total energy + Delta-G solvation = -3504.171300 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.35664 -39.15539 -38.22083 -34.75157 -34.16621 -33.04849 -31.46988 -30.59943 -29.32933 -27.73988 -26.83525 -25.25442 -23.18189 -22.55577 -21.54763 -20.28938 -19.93674 -19.29292 -18.03507 -16.87657 -16.01504 -15.79858 -15.69882 -15.55522 -14.91654 -14.56223 -14.34386 -14.27085 -13.84607 -13.60069 -13.29245 -13.13884 -12.94828 -12.79130 -12.69753 -12.61466 -12.18356 -12.12200 -11.47636 -11.09439 -10.81211 -10.69118 -10.35600 -10.26756 -9.95249 -9.79750 -9.58016 -9.02747 -8.90442 -8.71297 -8.51832 -8.44468 -6.73022 -5.82368 -3.25720 1.73363 2.27391 2.57656 3.36624 3.42213 3.43173 3.57752 3.70913 4.30915 4.37797 4.45433 4.69323 4.71558 4.79975 4.96921 5.16611 5.25246 5.32540 5.35690 5.57151 5.57717 5.74069 5.85541 5.91426 5.99327 6.11203 6.22998 6.36648 6.41707 6.53335 6.57209 6.71914 6.80424 6.84820 7.00240 7.13669 7.53986 7.72464 7.84783 7.90593 8.35505 8.54311 9.13423 9.76299 10.33397 11.25864 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.038027 B = 0.002761 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.146630 B =10137.762026 C =10352.731240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.450 5.450 3 C -0.021 4.021 4 C -0.166 4.166 5 C -0.229 4.229 6 C 0.588 3.412 7 O -0.561 6.561 8 N -0.714 5.714 9 C 0.132 3.868 10 C 0.065 3.935 11 H 0.058 0.942 12 C 0.122 3.878 13 N -0.594 5.594 14 C -0.255 4.255 15 H 0.068 0.932 16 C 0.002 3.998 17 N -0.903 5.903 18 Si 0.906 3.094 19 H -0.282 1.282 20 H -0.290 1.290 21 H -0.284 1.284 22 C 0.139 3.861 23 C 0.040 3.960 24 O -0.389 6.389 25 C 0.071 3.929 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.166 0.834 30 H 0.147 0.853 31 H 0.403 0.597 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.030 0.970 35 H 0.064 0.936 36 H 0.255 0.745 37 H 0.093 0.907 38 H 0.028 0.972 39 H 0.081 0.919 40 H 0.040 0.960 41 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.999 5.588 1.789 24.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.126 5.126 3 C -0.147 4.147 4 C -0.191 4.191 5 C -0.239 4.239 6 C 0.376 3.624 7 O -0.441 6.441 8 N -0.365 5.365 9 C 0.008 3.992 10 C 0.005 3.995 11 H 0.076 0.924 12 C -0.005 4.005 13 N -0.318 5.318 14 C -0.384 4.384 15 H 0.086 0.914 16 C -0.197 4.197 17 N -0.547 5.547 18 Si 0.735 3.265 19 H -0.208 1.208 20 H -0.216 1.216 21 H -0.210 1.210 22 C 0.013 3.987 23 C -0.038 4.038 24 O -0.308 6.308 25 C -0.064 4.064 26 H 0.093 0.907 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.183 0.817 30 H 0.164 0.836 31 H 0.238 0.762 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.048 0.952 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.112 0.888 38 H 0.046 0.954 39 H 0.099 0.901 40 H 0.058 0.942 41 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -24.382 4.780 1.566 24.895 hybrid contribution 1.083 0.757 0.696 1.493 sum -23.299 5.537 2.262 24.054 Atomic orbital electron populations 1.22101 0.77005 1.04617 1.03479 1.43611 1.06700 1.05966 1.56333 1.21733 0.90589 0.91224 1.11141 1.22104 0.96254 0.93333 1.07363 1.20409 0.92629 0.93389 1.17502 1.17365 0.82419 0.86958 0.75635 1.90754 1.86735 1.14748 1.51910 1.45691 1.05123 1.10752 1.74887 1.21389 0.82429 0.92603 1.02749 1.22811 0.94770 0.93267 0.88633 0.92402 1.21449 0.86703 0.92467 0.99930 1.44043 1.13769 1.40180 1.33798 1.19155 0.85215 1.41715 0.92341 0.91398 1.25043 0.97132 1.01799 0.95707 1.70033 1.21390 1.51359 1.11939 0.86317 0.81252 0.78423 0.80478 1.20792 1.21571 1.21000 1.21353 0.94728 0.92227 0.90354 1.23240 0.88296 0.92112 1.00132 1.87792 1.46188 1.54151 1.42670 1.21771 0.89841 0.91692 1.03144 0.90711 0.89648 0.89629 0.81678 0.83571 0.76246 0.90818 0.90294 0.95186 0.91776 0.93466 0.88842 0.95419 0.90060 0.94178 0.80881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.27 11.04 59.85 0.66 0.93 16 2 N -0.45 -3.70 3.09 -124.53 -0.38 -4.08 16 3 C -0.02 -0.18 11.34 -16.82 -0.19 -0.37 16 4 C -0.17 -1.77 10.56 -37.49 -0.40 -2.16 16 5 C -0.23 -2.99 6.29 -103.35 -0.65 -3.64 16 6 C 0.59 9.35 7.81 -12.60 -0.10 9.25 16 7 O -0.56 -10.66 16.91 5.25 0.09 -10.57 16 8 N -0.71 -10.72 5.45 -61.44 -0.33 -11.06 16 9 C 0.13 2.16 5.37 -4.04 -0.02 2.13 16 10 C 0.07 1.18 2.86 -26.58 -0.08 1.10 16 11 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 12 C 0.12 2.60 6.03 -3.53 -0.02 2.58 16 13 N -0.59 -15.06 3.05 -172.08 -0.53 -15.58 16 14 C -0.26 -6.99 9.65 -15.06 -0.15 -7.14 16 15 H 0.07 1.81 7.88 -52.49 -0.41 1.40 16 16 C 0.00 0.05 4.94 -17.43 -0.09 -0.03 16 17 N -0.90 -26.15 11.15 55.49 0.62 -25.53 16 18 Si 0.91 21.55 29.59 -169.99 -5.03 16.52 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C 0.14 3.35 5.42 -3.75 -0.02 3.33 16 23 C 0.04 0.78 6.97 37.10 0.26 1.04 16 24 O -0.39 -7.47 10.14 -35.23 -0.36 -7.83 16 25 C 0.07 0.76 11.12 -16.84 -0.19 0.58 16 26 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.08 0.19 8.13 -51.93 -0.42 -0.23 16 28 H 0.08 0.23 8.13 -51.93 -0.42 -0.19 16 29 H 0.17 0.88 8.06 -52.48 -0.42 0.46 16 30 H 0.15 1.35 7.70 -52.49 -0.40 0.94 16 31 H 0.40 5.42 7.48 -40.82 -0.31 5.12 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.06 1.30 7.96 -51.93 -0.41 0.88 16 36 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.09 2.45 6.15 -51.93 -0.32 2.13 16 38 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.17 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 343.07 15.07 5.17 5.17 Total: -1.00 -34.16 343.07 -7.79 -41.95 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -6.06 Total: 3.43 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: -0.97 Total: 7.59 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: -0.63 Total: -56.26 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.27 Total: -18.40 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.16 -7.79 -41.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035326607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.176 kcal (2) G-P(sol) polarization free energy of solvation -34.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds