Wall clock time and date at job start Tue Mar 31 2020 03:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36451 * 124.85144 * 2 1 4 4 C 1.34488 * 108.85750 * 179.77326 * 3 2 1 5 5 C 1.46695 * 106.32923 * 0.37662 * 4 3 2 6 6 C 1.47258 * 126.93805 * 179.89260 * 5 4 3 7 7 O 1.21630 * 119.99651 * 179.67962 * 6 5 4 8 8 N 1.34772 * 120.00528 * 359.68249 * 6 5 4 9 9 C 1.46504 * 120.00436 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47280 * 180.02562 * 9 8 6 11 11 H 1.09002 * 109.51201 * 59.89796 * 10 9 8 12 12 C 1.53293 * 109.51285 * 180.02562 * 10 9 8 13 13 N 1.47159 * 108.38381 * 172.27774 * 12 10 9 14 14 C 1.36936 * 120.98024 * 129.44415 * 13 12 10 15 15 H 1.08000 * 120.00115 * 333.74322 * 14 13 12 16 16 C 1.38811 * 119.99830 * 154.03233 * 14 13 12 17 17 N 1.31624 * 119.99652 * 342.94501 * 16 14 13 18 18 Si 1.86796 * 119.99994 * 162.94681 * 16 14 13 19 19 H 1.48503 * 109.46909 * 59.99935 * 18 16 14 20 20 H 1.48503 * 109.46731 * 179.97438 * 18 16 14 21 21 H 1.48494 * 109.47337 * 299.99701 * 18 16 14 22 22 C 1.47149 * 118.03131 * 309.71026 * 13 12 10 23 23 C 1.52880 * 108.60741 * 50.23246 * 22 13 12 24 24 O 1.42955 * 109.29916 * 307.92939 * 23 22 13 25 25 C 1.34662 * 124.85216 * 180.02562 * 2 1 3 26 26 H 1.08990 * 109.47145 * 269.97726 * 1 2 3 27 27 H 1.09000 * 109.46976 * 29.97816 * 1 2 3 28 28 H 1.08998 * 109.47164 * 149.97213 * 1 2 3 29 29 H 1.08005 * 125.57014 * 0.05457 * 3 2 1 30 30 H 1.07998 * 126.83872 * 180.25542 * 4 3 2 31 31 H 0.97005 * 120.00096 * 0.02562 * 8 6 5 32 32 H 1.08997 * 109.46708 * 60.00084 * 9 8 6 33 33 H 1.08996 * 109.47135 * 300.00021 * 9 8 6 34 34 H 1.08995 * 109.68281 * 52.55125 * 12 10 9 35 35 H 1.08995 * 109.67979 * 291.99759 * 12 10 9 36 36 H 0.96999 * 119.99599 * 180.02562 * 17 16 14 37 37 H 1.09003 * 109.67594 * 170.00813 * 22 13 12 38 38 H 1.08997 * 109.68775 * 290.56610 * 22 13 12 39 39 H 1.09007 * 109.58279 * 187.91519 * 23 22 13 40 40 H 1.09006 * 109.40847 * 67.84130 * 23 22 13 41 41 H 1.07997 * 125.79632 * 359.95474 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2448 1.1198 0.0000 4 6 3.5376 0.7492 0.0050 5 6 3.5462 -0.7177 -0.0009 6 6 4.7284 -1.5957 -0.0007 7 8 4.5885 -2.8040 -0.0001 8 7 5.9653 -1.0606 -0.0010 9 6 7.1414 -1.9342 -0.0002 10 6 8.4110 -1.0803 -0.0002 11 1 8.4252 -0.4491 0.8884 12 6 9.6422 -1.9935 -0.0001 13 7 10.8394 -1.1585 -0.1877 14 6 11.9149 -1.2695 0.6525 15 1 11.7757 -1.6200 1.6646 16 6 13.1833 -0.9258 0.2054 17 7 13.4197 -0.8192 -1.0851 18 14 14.5546 -0.6146 1.4350 19 1 14.7794 -1.8382 2.2459 20 1 15.8020 -0.2671 0.7078 21 1 14.1729 0.5082 2.3286 22 6 10.8440 -0.1966 -1.3012 23 6 9.5563 0.6253 -1.2413 24 8 8.4348 -0.2583 -1.1697 25 6 2.2345 -1.1051 -0.0005 26 1 -0.3633 -0.0004 1.0276 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3633 -0.8897 -0.5143 29 1 1.8828 2.1374 0.0008 30 1 4.3982 1.4017 0.0102 31 1 6.0769 -0.0970 -0.0010 32 1 7.1267 -2.5640 -0.8897 33 1 7.1267 -2.5626 0.8902 34 1 9.5654 -2.7135 -0.8148 35 1 9.7080 -2.5208 0.9516 36 1 14.3061 -0.5794 -1.3975 37 1 11.7052 0.4654 -1.2108 38 1 10.8902 -0.7325 -2.2492 39 1 9.4759 1.2441 -2.1351 40 1 9.5744 1.2630 -0.3574 41 1 1.8767 -2.1240 -0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035326607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:13 Heat of formation + Delta-G solvation = -27.421904 kcal Electronic energy + Delta-G solvation = -23078.677486 eV Core-core repulsion = 19573.480600 eV Total energy + Delta-G solvation = -3505.196886 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.09181 -40.53034 -39.69948 -36.48252 -35.68411 -33.76274 -33.29266 -32.23396 -30.12261 -29.30170 -27.88838 -26.62602 -24.97739 -23.83924 -22.87381 -21.56971 -20.98364 -20.46919 -18.99381 -18.73650 -17.52039 -17.04301 -16.94776 -16.56716 -16.30897 -16.12257 -15.60968 -15.49693 -15.29741 -14.99033 -14.79220 -14.55253 -14.15973 -13.87597 -13.70075 -13.28109 -13.21487 -13.03548 -12.97633 -12.89063 -12.63965 -12.52465 -12.18271 -12.08560 -11.86320 -11.34461 -10.99114 -10.79082 -10.53295 -10.11013 -9.47734 -9.25479 -8.75593 -7.90965 -5.38423 0.80002 1.47560 1.49511 1.55975 1.56802 1.94184 2.40084 2.52652 2.62022 2.80774 3.23879 3.50025 3.95822 4.02055 4.04286 4.08242 4.12264 4.25243 4.36796 4.49374 4.50522 4.53336 4.62474 4.65544 4.72759 4.77968 4.79873 4.90201 5.05013 5.06423 5.17667 5.24431 5.47537 5.55339 5.60962 5.79764 6.10019 6.26092 6.33507 6.38819 6.69900 7.06162 7.35446 7.74143 8.28193 9.15222 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.038027 B = 0.002761 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.146630 B =10137.762026 C =10352.731240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.443 5.443 3 C -0.008 4.008 4 C -0.187 4.187 5 C -0.268 4.268 6 C 0.584 3.416 7 O -0.602 6.602 8 N -0.709 5.709 9 C 0.142 3.858 10 C 0.081 3.919 11 H 0.069 0.931 12 C 0.117 3.883 13 N -0.613 5.613 14 C -0.268 4.268 15 H 0.073 0.927 16 C -0.051 4.051 17 N -0.936 5.936 18 Si 0.973 3.027 19 H -0.276 1.276 20 H -0.294 1.294 21 H -0.275 1.275 22 C 0.143 3.857 23 C 0.054 3.946 24 O -0.389 6.389 25 C 0.069 3.931 26 H 0.088 0.912 27 H 0.107 0.893 28 H 0.095 0.905 29 H 0.202 0.798 30 H 0.155 0.845 31 H 0.412 0.588 32 H 0.059 0.941 33 H 0.086 0.914 34 H 0.017 0.983 35 H 0.072 0.928 36 H 0.252 0.748 37 H 0.068 0.932 38 H -0.002 1.002 39 H 0.110 0.890 40 H 0.051 0.949 41 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.268 7.326 2.831 27.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.118 5.118 3 C -0.135 4.135 4 C -0.210 4.210 5 C -0.278 4.278 6 C 0.375 3.625 7 O -0.486 6.486 8 N -0.359 5.359 9 C 0.018 3.982 10 C 0.021 3.979 11 H 0.087 0.913 12 C -0.009 4.009 13 N -0.337 5.337 14 C -0.398 4.398 15 H 0.090 0.910 16 C -0.246 4.246 17 N -0.582 5.582 18 Si 0.801 3.199 19 H -0.202 1.202 20 H -0.220 1.220 21 H -0.200 1.200 22 C 0.017 3.983 23 C -0.024 4.024 24 O -0.309 6.309 25 C -0.069 4.069 26 H 0.107 0.893 27 H 0.126 0.874 28 H 0.114 0.886 29 H 0.219 0.781 30 H 0.172 0.828 31 H 0.248 0.752 32 H 0.077 0.923 33 H 0.105 0.895 34 H 0.035 0.965 35 H 0.091 0.909 36 H 0.061 0.939 37 H 0.087 0.913 38 H 0.016 0.984 39 H 0.128 0.872 40 H 0.069 0.931 41 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -26.700 6.549 2.618 27.616 hybrid contribution 1.679 0.186 0.351 1.726 sum -25.021 6.735 2.970 26.081 Atomic orbital electron populations 1.22454 0.74159 1.06343 1.04928 1.43937 1.08398 1.05092 1.54346 1.22290 0.89913 0.92634 1.08665 1.22293 0.97850 0.92169 1.08686 1.20363 0.92300 0.94459 1.20679 1.17845 0.83216 0.86848 0.74597 1.90716 1.87294 1.16544 1.54038 1.45582 1.04597 1.10990 1.74708 1.21175 0.82288 0.92312 1.02465 1.22633 0.93896 0.92652 0.88699 0.91336 1.21594 0.86796 0.92699 0.99841 1.44327 1.14456 1.41256 1.33700 1.19521 0.86099 1.41243 0.92900 0.90981 1.25851 0.99440 1.01992 0.97337 1.70196 1.21629 1.52600 1.13746 0.85256 0.77988 0.78475 0.78203 1.20156 1.21980 1.20047 1.21231 0.96426 0.91867 0.88755 1.23095 0.85752 0.91449 1.02072 1.87807 1.45649 1.54181 1.43229 1.21912 0.89686 0.92820 1.02448 0.89348 0.87396 0.88593 0.78101 0.82775 0.75218 0.92284 0.89548 0.96479 0.90913 0.93903 0.91336 0.98416 0.87226 0.93051 0.80337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.25 11.04 127.77 1.41 1.66 16 2 N -0.44 -6.05 3.09 -547.91 -1.69 -7.74 16 3 C -0.01 -0.11 11.34 83.12 0.94 0.83 16 4 C -0.19 -3.63 10.56 23.62 0.25 -3.38 16 5 C -0.27 -6.81 6.29 -19.04 -0.12 -6.93 16 6 C 0.58 18.68 7.81 86.62 0.68 19.36 16 7 O -0.60 -23.41 16.91 -4.13 -0.07 -23.48 16 8 N -0.71 -20.96 5.45 -466.53 -2.54 -23.50 16 9 C 0.14 4.60 5.37 86.38 0.46 5.07 16 10 C 0.08 2.86 2.86 30.69 0.09 2.95 16 11 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 12 C 0.12 5.03 6.03 86.35 0.52 5.55 16 13 N -0.61 -31.44 3.05 -698.35 -2.13 -33.57 16 14 C -0.27 -14.78 9.65 84.03 0.81 -13.97 16 15 H 0.07 3.83 7.88 -2.91 -0.02 3.80 16 16 C -0.05 -2.83 4.94 84.86 0.42 -2.41 16 17 N -0.94 -55.49 11.15 21.65 0.24 -55.25 16 18 Si 0.97 44.54 29.59 68.60 2.03 46.57 16 19 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 20 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 22 C 0.14 7.00 5.42 86.22 0.47 7.47 16 23 C 0.05 2.04 6.97 71.94 0.50 2.54 16 24 O -0.39 -14.54 10.14 -148.98 -1.51 -16.05 16 25 C 0.07 1.40 11.12 83.91 0.93 2.34 16 26 H 0.09 0.19 8.14 -2.39 -0.02 0.17 16 27 H 0.11 0.01 8.13 -2.39 -0.02 -0.01 16 28 H 0.10 0.23 8.13 -2.39 -0.02 0.21 16 29 H 0.20 1.21 8.06 -2.91 -0.02 1.19 16 30 H 0.15 2.57 7.70 -2.91 -0.02 2.55 16 31 H 0.41 10.63 7.48 -92.70 -0.69 9.94 16 32 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 34 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.07 2.94 7.96 -2.39 -0.02 2.93 16 36 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 37 H 0.07 3.69 6.15 -2.39 -0.01 3.67 16 38 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 39 H 0.11 3.53 8.14 -2.38 -0.02 3.51 16 40 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 41 H 0.18 3.28 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -75.31 343.07 2.02 -73.29 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: 0.34 Total: 18.67 kcal Atomic # 6 Polarization: 13.70 SS G_CDS: 7.36 Total: 21.06 kcal Atomic # 7 Polarization: -113.94 SS G_CDS: -6.12 Total: -120.06 kcal Atomic # 8 Polarization: -37.95 SS G_CDS: -1.58 Total: -39.53 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -75.31 2.02 -73.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035326607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.867 kcal (2) G-P(sol) polarization free energy of solvation -75.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds