Wall clock time and date at job start Tue Mar 31 2020 03:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47038 * 2 1 4 4 H 1.09000 * 109.49712 * 305.06838 * 3 2 1 5 5 C 1.53192 * 109.52606 * 65.14391 * 3 2 1 6 6 N 1.46921 * 108.77904 * 174.60128 * 5 3 2 7 7 C 1.34777 * 120.62883 * 126.36857 * 6 5 3 8 8 O 1.21612 * 120.00404 * 353.24556 * 7 6 5 9 9 C 1.47239 * 119.99775 * 173.24187 * 7 6 5 10 10 C 1.37008 * 127.18690 * 157.61362 * 9 7 6 11 11 N 1.33317 * 106.37056 * 179.97438 * 10 9 7 12 12 N 1.28503 * 109.43990 * 359.97438 * 11 10 9 13 13 N 1.28710 * 110.64041 * 359.75463 * 12 11 10 14 14 H 0.97002 * 126.03989 * 180.26183 * 13 12 11 15 15 C 1.46925 * 118.74072 * 306.39519 * 6 5 3 16 16 C 1.53163 * 108.76694 * 53.60812 * 15 6 5 17 17 C 1.53036 * 109.49937 * 185.00059 * 3 2 1 18 18 H 1.08992 * 109.46081 * 58.64111 * 17 3 2 19 19 N 1.46509 * 109.45938 * 298.67096 * 17 3 2 20 20 C 1.36928 * 120.00127 * 154.97429 * 19 17 3 21 21 H 1.08003 * 120.00316 * 359.97438 * 20 19 17 22 22 C 1.38810 * 120.00106 * 180.02562 * 20 19 17 23 23 N 1.31621 * 119.99893 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00183 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.46888 * 269.99878 * 24 22 20 26 26 H 1.48508 * 109.47059 * 29.99319 * 24 22 20 27 27 H 1.48493 * 109.47195 * 149.99336 * 24 22 20 28 28 H 1.09002 * 109.46702 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47130 * 299.99903 * 1 2 3 30 30 H 1.08996 * 109.47059 * 60.00307 * 1 2 3 31 31 H 1.08996 * 109.47416 * 240.00445 * 2 1 3 32 32 H 1.08996 * 109.47059 * 119.99693 * 2 1 3 33 33 H 1.08999 * 109.58741 * 294.39437 * 5 3 2 34 34 H 1.08999 * 109.58792 * 54.67287 * 5 3 2 35 35 H 1.08003 * 126.81357 * 359.92774 * 10 9 7 36 36 H 1.08998 * 109.58983 * 173.39211 * 15 6 5 37 37 H 1.09002 * 109.58214 * 293.67532 * 15 6 5 38 38 H 1.09000 * 109.47450 * 185.41123 * 16 15 6 39 39 H 1.08995 * 109.50626 * 65.32071 * 16 15 6 40 40 H 0.97000 * 119.99514 * 334.96948 * 19 17 3 41 41 H 0.97004 * 119.99555 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9823 -0.8410 5 6 1.6385 2.1275 1.3101 6 7 2.2449 3.4652 1.3496 7 6 1.4854 4.5574 1.5655 8 8 0.2741 4.4572 1.6074 9 6 2.1221 5.8720 1.7507 10 6 1.5518 7.1028 1.5585 11 7 2.4936 8.0021 1.8444 12 7 3.5727 7.3961 2.1902 13 7 3.4069 6.1201 2.1576 14 1 4.0742 5.4520 2.3796 15 6 3.6951 3.5896 1.1487 16 6 4.0732 2.8884 -0.1595 17 6 3.5652 1.4451 -0.1257 18 1 3.8546 0.9367 -1.0453 19 7 4.1508 0.7482 1.0223 20 6 5.3883 0.1721 0.9151 21 1 5.9327 0.2311 -0.0159 22 6 5.9429 -0.4886 2.0026 23 7 5.2793 -0.5608 3.1370 24 14 7.6315 -1.2739 1.8567 25 1 7.4863 -2.6775 1.3939 26 1 8.4488 -0.5122 0.8782 27 1 8.3019 -1.2562 3.1816 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.5532 2.2168 1.3581 34 1 1.9942 1.5377 2.1548 35 1 0.5403 7.3045 1.2382 36 1 3.9668 4.6435 1.0901 37 1 4.2207 3.1225 1.9815 38 1 5.1574 2.8899 -0.2723 39 1 3.6189 3.4145 -0.9990 40 1 3.6617 0.6951 1.8583 41 1 5.6671 -1.0223 3.8971 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037879820.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:52 Heat of formation + Delta-G solvation = 81.069418 kcal Electronic energy + Delta-G solvation = -24562.818916 eV Core-core repulsion = 21094.619318 eV Total energy + Delta-G solvation = -3468.199598 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.53993 -40.18547 -38.01432 -35.05496 -33.92231 -33.43463 -31.90718 -31.50644 -29.67127 -28.64841 -25.94511 -24.27508 -23.89767 -23.32908 -22.83366 -21.07920 -20.82964 -19.04293 -17.82270 -17.55701 -16.95815 -16.45329 -16.19380 -15.24237 -14.74324 -14.62375 -14.36759 -14.15636 -13.98720 -13.47650 -13.43799 -13.18823 -12.74027 -12.47274 -12.27469 -11.99137 -11.59830 -11.42781 -11.29221 -11.18305 -10.96603 -10.94376 -10.69738 -10.47776 -10.41019 -10.29091 -10.10976 -9.94655 -9.69957 -9.64408 -9.07400 -8.56115 -7.13299 -5.92648 -3.21988 0.81146 2.15282 2.31249 2.76924 3.03279 3.32795 3.38936 3.40568 4.07590 4.43817 4.45775 4.68774 4.85922 5.02998 5.07145 5.14836 5.23995 5.28070 5.45369 5.56075 5.57291 5.63866 5.75228 5.79796 5.83596 5.93258 5.99372 6.13468 6.18815 6.28944 6.34076 6.41668 6.45802 6.51809 6.58591 6.73769 6.83618 7.27207 7.56547 7.90616 8.13373 8.25570 9.37789 9.92163 10.27334 11.29448 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.014983 B = 0.005255 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.302250 B = 5327.066127 C = 6662.197085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.110 4.110 3 C -0.104 4.104 4 H 0.069 0.931 5 C 0.119 3.881 6 N -0.594 5.594 7 C 0.590 3.410 8 O -0.525 6.525 9 C -0.055 4.055 10 C 0.023 3.977 11 N -0.272 5.272 12 N -0.055 5.055 13 N -0.374 5.374 14 H 0.457 0.543 15 C 0.096 3.904 16 C -0.148 4.148 17 C 0.178 3.822 18 H 0.055 0.945 19 N -0.719 5.719 20 C -0.242 4.242 21 H 0.070 0.930 22 C -0.009 4.009 23 N -0.932 5.932 24 Si 0.904 3.096 25 H -0.290 1.290 26 H -0.282 1.282 27 H -0.292 1.292 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.202 0.798 36 H 0.062 0.938 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.052 0.948 40 H 0.383 0.617 41 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.655 7.889 -4.889 11.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.124 4.124 4 H 0.087 0.913 5 C -0.002 4.002 6 N -0.326 5.326 7 C 0.375 3.625 8 O -0.400 6.400 9 C -0.189 4.189 10 C -0.136 4.136 11 N -0.138 5.138 12 N -0.037 5.037 13 N -0.106 5.106 14 H 0.309 0.691 15 C -0.027 4.027 16 C -0.189 4.189 17 C 0.067 3.933 18 H 0.073 0.927 19 N -0.361 5.361 20 C -0.373 4.373 21 H 0.088 0.912 22 C -0.205 4.205 23 N -0.580 5.580 24 Si 0.735 3.265 25 H -0.217 1.217 26 H -0.208 1.208 27 H -0.218 1.218 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.110 0.890 34 H 0.099 0.901 35 H 0.219 0.781 36 H 0.080 0.920 37 H 0.113 0.887 38 H 0.097 0.903 39 H 0.071 0.929 40 H 0.219 0.781 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.239 8.960 -4.621 11.856 hybrid contribution 0.736 -1.770 0.168 1.924 sum -5.504 7.190 -4.453 10.090 Atomic orbital electron populations 1.21859 0.96672 1.01183 1.01410 1.21416 0.94389 0.95460 1.03527 1.21767 0.97346 0.96394 0.96863 0.91273 1.21825 0.99073 0.80426 0.98893 1.48067 1.08585 1.06775 1.69145 1.16828 0.86315 0.81510 0.77831 1.90829 1.12571 1.84623 1.51962 1.22419 0.86519 0.98090 1.11898 1.23854 1.01280 0.86688 1.01786 1.74954 0.96565 1.27292 1.14962 1.78194 1.19957 0.88545 1.16959 1.46444 1.11431 1.08441 1.44296 0.69060 1.22126 0.79534 0.99372 1.01660 1.22510 1.02212 0.99529 0.94632 1.20231 0.89751 0.90346 0.92945 0.92701 1.42480 1.19150 1.64028 1.10441 1.19207 0.93558 1.27373 0.97134 0.91189 1.24702 0.98588 1.01230 0.95980 1.69640 1.38209 1.47872 1.02257 0.86246 0.84064 0.79447 0.76717 1.21709 1.20811 1.21843 0.93060 0.92778 0.93267 0.91863 0.90424 0.89008 0.90103 0.78096 0.92044 0.88737 0.90285 0.92911 0.78129 0.93416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.67 37.16 0.36 -1.53 16 2 C -0.11 -1.58 5.19 -26.73 -0.14 -1.72 16 3 C -0.10 -1.50 2.13 -90.50 -0.19 -1.69 16 4 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 5 C 0.12 1.75 5.04 -3.71 -0.02 1.74 16 6 N -0.59 -8.31 2.97 -174.13 -0.52 -8.82 16 7 C 0.59 8.50 7.65 -12.60 -0.10 8.41 16 8 O -0.52 -8.77 16.41 5.27 0.09 -8.69 16 9 C -0.05 -0.70 6.49 -82.33 -0.53 -1.24 16 10 C 0.02 0.29 11.94 -17.35 -0.21 0.08 16 11 N -0.27 -3.77 12.35 30.47 0.38 -3.39 16 12 N -0.05 -0.73 13.35 60.35 0.81 0.07 16 13 N -0.37 -4.40 5.78 33.31 0.19 -4.21 16 14 H 0.46 4.49 6.42 -190.33 -1.22 3.27 16 15 C 0.10 1.29 5.15 -3.73 -0.02 1.27 16 16 C -0.15 -2.14 5.78 -26.62 -0.15 -2.29 16 17 C 0.18 2.95 2.53 -67.88 -0.17 2.78 16 18 H 0.06 0.96 8.08 -51.93 -0.42 0.54 16 19 N -0.72 -14.94 3.73 -53.38 -0.20 -15.14 16 20 C -0.24 -5.86 9.93 -15.06 -0.15 -6.01 16 21 H 0.07 1.68 7.83 -52.48 -0.41 1.26 16 22 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 23 N -0.93 -25.57 13.06 55.49 0.72 -24.85 16 24 Si 0.90 20.77 29.55 -169.99 -5.02 15.75 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.66 6.70 -51.93 -0.35 0.31 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.08 1.31 7.70 -51.93 -0.40 0.91 16 33 H 0.09 1.35 5.72 -51.93 -0.30 1.05 16 34 H 0.08 1.32 6.65 -51.93 -0.35 0.97 16 35 H 0.20 1.97 8.06 -52.48 -0.42 1.55 16 36 H 0.06 0.69 4.16 -51.93 -0.22 0.48 16 37 H 0.09 1.44 7.74 -51.93 -0.40 1.04 16 38 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.38 8.57 5.95 -40.82 -0.24 8.33 16 41 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 327.69 15.07 4.94 4.94 Total: -1.00 -28.49 327.69 -6.43 -34.92 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -6.40 Total: 9.95 kcal Atomic # 6 Polarization: 0.89 SS G_CDS: -1.42 Total: -0.53 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: 1.38 Total: -56.35 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: 0.09 Total: -8.69 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.49 -6.43 -34.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037879820.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.989 kcal (2) G-P(sol) polarization free energy of solvation -28.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds