Wall clock time and date at job start Tue Mar 31 2020 03:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47038 * 2 1 4 4 H 1.09000 * 109.49712 * 305.06838 * 3 2 1 5 5 C 1.53192 * 109.52606 * 65.14391 * 3 2 1 6 6 N 1.46921 * 108.77904 * 174.60128 * 5 3 2 7 7 C 1.34777 * 120.62883 * 126.36857 * 6 5 3 8 8 O 1.21612 * 120.00404 * 353.24556 * 7 6 5 9 9 C 1.47239 * 119.99775 * 173.24187 * 7 6 5 10 10 C 1.37008 * 127.18690 * 157.61362 * 9 7 6 11 11 N 1.33317 * 106.37056 * 179.97438 * 10 9 7 12 12 N 1.28503 * 109.43990 * 359.97438 * 11 10 9 13 13 N 1.28710 * 110.64041 * 359.75463 * 12 11 10 14 14 H 0.97002 * 126.03989 * 180.26183 * 13 12 11 15 15 C 1.46925 * 118.74072 * 306.39519 * 6 5 3 16 16 C 1.53163 * 108.76694 * 53.60812 * 15 6 5 17 17 C 1.53036 * 109.49937 * 185.00059 * 3 2 1 18 18 H 1.08992 * 109.46081 * 58.64111 * 17 3 2 19 19 N 1.46509 * 109.45938 * 298.67096 * 17 3 2 20 20 C 1.36928 * 120.00127 * 154.97429 * 19 17 3 21 21 H 1.08003 * 120.00316 * 359.97438 * 20 19 17 22 22 C 1.38810 * 120.00106 * 180.02562 * 20 19 17 23 23 N 1.31621 * 119.99893 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00183 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.46888 * 269.99878 * 24 22 20 26 26 H 1.48508 * 109.47059 * 29.99319 * 24 22 20 27 27 H 1.48493 * 109.47195 * 149.99336 * 24 22 20 28 28 H 1.09002 * 109.46702 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47130 * 299.99903 * 1 2 3 30 30 H 1.08996 * 109.47059 * 60.00307 * 1 2 3 31 31 H 1.08996 * 109.47416 * 240.00445 * 2 1 3 32 32 H 1.08996 * 109.47059 * 119.99693 * 2 1 3 33 33 H 1.08999 * 109.58741 * 294.39437 * 5 3 2 34 34 H 1.08999 * 109.58792 * 54.67287 * 5 3 2 35 35 H 1.08003 * 126.81357 * 359.92774 * 10 9 7 36 36 H 1.08998 * 109.58983 * 173.39211 * 15 6 5 37 37 H 1.09002 * 109.58214 * 293.67532 * 15 6 5 38 38 H 1.09000 * 109.47450 * 185.41123 * 16 15 6 39 39 H 1.08995 * 109.50626 * 65.32071 * 16 15 6 40 40 H 0.97000 * 119.99514 * 334.96948 * 19 17 3 41 41 H 0.97004 * 119.99555 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9823 -0.8410 5 6 1.6385 2.1275 1.3101 6 7 2.2449 3.4652 1.3496 7 6 1.4854 4.5574 1.5655 8 8 0.2741 4.4572 1.6074 9 6 2.1221 5.8720 1.7507 10 6 1.5518 7.1028 1.5585 11 7 2.4936 8.0021 1.8444 12 7 3.5727 7.3961 2.1902 13 7 3.4069 6.1201 2.1576 14 1 4.0742 5.4520 2.3796 15 6 3.6951 3.5896 1.1487 16 6 4.0732 2.8884 -0.1595 17 6 3.5652 1.4451 -0.1257 18 1 3.8546 0.9367 -1.0453 19 7 4.1508 0.7482 1.0223 20 6 5.3883 0.1721 0.9151 21 1 5.9327 0.2311 -0.0159 22 6 5.9429 -0.4886 2.0026 23 7 5.2793 -0.5608 3.1370 24 14 7.6315 -1.2739 1.8567 25 1 7.4863 -2.6775 1.3939 26 1 8.4488 -0.5122 0.8782 27 1 8.3019 -1.2562 3.1816 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 0.5532 2.2168 1.3581 34 1 1.9942 1.5377 2.1548 35 1 0.5403 7.3045 1.2382 36 1 3.9668 4.6435 1.0901 37 1 4.2207 3.1225 1.9815 38 1 5.1574 2.8899 -0.2723 39 1 3.6189 3.4145 -0.9990 40 1 3.6617 0.6951 1.8583 41 1 5.6671 -1.0223 3.8971 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037879820.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:52 Heat of formation + Delta-G solvation = 62.588753 kcal Electronic energy + Delta-G solvation = -24563.620298 eV Core-core repulsion = 21094.619318 eV Total energy + Delta-G solvation = -3469.000979 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.55723 -41.38875 -39.28575 -36.28755 -35.45200 -34.47712 -33.46467 -32.55789 -31.12004 -29.95290 -27.19038 -25.58577 -25.39709 -24.55137 -23.87308 -22.26074 -21.92781 -20.30021 -19.32200 -18.95705 -18.12582 -17.54870 -17.32574 -16.68083 -16.15703 -15.95139 -15.64025 -15.35521 -15.28073 -14.85849 -14.70723 -14.41050 -14.10604 -13.74927 -13.32324 -13.18636 -12.98607 -12.85874 -12.66024 -12.48711 -12.43530 -12.25018 -12.11575 -11.85753 -11.75214 -11.62129 -11.45918 -11.31126 -11.14233 -10.83856 -10.68184 -9.78462 -8.93111 -7.89369 -5.14963 -0.22624 1.12348 1.31458 1.49515 1.51938 1.57843 1.65229 1.93315 2.59646 3.01695 3.43163 3.44392 3.62705 3.82721 3.86013 3.89083 4.00302 4.06848 4.15818 4.26848 4.41715 4.45735 4.48979 4.66748 4.73552 4.81057 4.90425 4.98168 4.99874 5.14216 5.18504 5.20486 5.25312 5.39010 5.47659 5.51053 5.59393 5.64070 6.12274 6.32807 6.75241 7.11725 7.41604 8.16419 8.40278 9.33479 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.014983 B = 0.005255 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.302250 B = 5327.066127 C = 6662.197085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.105 4.105 3 C -0.093 4.093 4 H 0.087 0.913 5 C 0.125 3.875 6 N -0.592 5.592 7 C 0.597 3.403 8 O -0.547 6.547 9 C -0.062 4.062 10 C 0.032 3.968 11 N -0.290 5.290 12 N -0.062 5.062 13 N -0.362 5.362 14 H 0.464 0.536 15 C 0.103 3.897 16 C -0.141 4.141 17 C 0.172 3.828 18 H 0.050 0.950 19 N -0.723 5.723 20 C -0.225 4.225 21 H 0.075 0.925 22 C -0.067 4.067 23 N -0.966 5.966 24 Si 0.957 3.043 25 H -0.295 1.295 26 H -0.271 1.271 27 H -0.303 1.303 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.046 0.954 33 H 0.096 0.904 34 H 0.060 0.940 35 H 0.225 0.775 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.375 0.625 41 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.086 9.095 -6.350 13.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.144 4.144 3 C -0.113 4.113 4 H 0.106 0.894 5 C 0.003 3.997 6 N -0.323 5.323 7 C 0.382 3.618 8 O -0.424 6.424 9 C -0.197 4.197 10 C -0.127 4.127 11 N -0.155 5.155 12 N -0.043 5.043 13 N -0.096 5.096 14 H 0.318 0.682 15 C -0.020 4.020 16 C -0.182 4.182 17 C 0.063 3.937 18 H 0.068 0.932 19 N -0.364 5.364 20 C -0.357 4.357 21 H 0.093 0.907 22 C -0.260 4.260 23 N -0.618 5.618 24 Si 0.789 3.211 25 H -0.223 1.223 26 H -0.196 1.196 27 H -0.230 1.230 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.114 0.886 34 H 0.078 0.922 35 H 0.242 0.758 36 H 0.104 0.896 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.209 0.791 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.654 10.194 -6.132 13.631 hybrid contribution 0.823 -2.112 0.554 2.333 sum -5.831 8.082 -5.578 11.421 Atomic orbital electron populations 1.21798 0.94693 1.01926 1.02044 1.21338 0.96104 0.95061 1.01868 1.21677 0.95689 0.96608 0.97296 0.89441 1.21690 0.99201 0.80612 0.98223 1.48038 1.08727 1.06523 1.69001 1.16890 0.85966 0.81796 0.77106 1.90821 1.13545 1.85022 1.52983 1.22230 0.86937 0.97521 1.12985 1.24285 1.01925 0.86078 1.00437 1.74969 0.96964 1.27829 1.15697 1.78182 1.20118 0.88949 1.17095 1.46419 1.11318 1.08263 1.43559 0.68201 1.22048 0.78995 1.00587 1.00403 1.22384 1.01906 0.97976 0.95936 1.20442 0.91127 0.91129 0.90996 0.93241 1.42563 1.18228 1.64242 1.11354 1.19530 0.94295 1.25253 0.96636 0.90743 1.25284 1.01412 1.03094 0.96171 1.69775 1.39478 1.49729 1.02778 0.85376 0.81248 0.78417 0.76099 1.22310 1.19593 1.23029 0.92370 0.92861 0.91809 0.92033 0.93508 0.88624 0.92178 0.75820 0.89589 0.90660 0.90891 0.90681 0.79120 0.94398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 9.67 71.98 0.70 -2.67 16 2 C -0.11 -2.97 5.19 30.59 0.16 -2.81 16 3 C -0.09 -2.55 2.13 -10.72 -0.02 -2.57 16 4 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 5 C 0.12 3.56 5.04 86.36 0.44 3.99 16 6 N -0.59 -15.65 2.97 -823.08 -2.45 -18.09 16 7 C 0.60 16.04 7.65 86.61 0.66 16.70 16 8 O -0.55 -17.28 16.41 -4.07 -0.07 -17.35 16 9 C -0.06 -1.46 6.49 40.41 0.26 -1.20 16 10 C 0.03 0.72 11.94 84.18 1.00 1.73 16 11 N -0.29 -7.43 12.35 -57.50 -0.71 -8.14 16 12 N -0.06 -1.54 13.35 37.02 0.49 -1.04 16 13 N -0.36 -7.80 5.78 -48.52 -0.28 -8.08 16 14 H 0.46 8.30 6.42 -219.90 -1.41 6.89 16 15 C 0.10 2.58 5.15 86.35 0.44 3.02 16 16 C -0.14 -3.80 5.78 30.66 0.18 -3.62 16 17 C 0.17 5.50 2.53 45.02 0.11 5.61 16 18 H 0.05 1.66 8.08 -2.39 -0.02 1.64 16 19 N -0.72 -30.05 3.73 -322.81 -1.20 -31.26 16 20 C -0.23 -10.86 9.93 84.03 0.83 -10.03 16 21 H 0.07 3.48 7.83 -2.91 -0.02 3.46 16 22 C -0.07 -3.49 5.50 84.86 0.47 -3.02 16 23 N -0.97 -54.26 13.06 21.65 0.28 -53.98 16 24 Si 0.96 43.04 29.55 68.60 2.03 45.07 16 25 H -0.30 -13.39 7.11 99.48 0.71 -12.69 16 26 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 27 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 28 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.05 1.23 6.70 -2.39 -0.02 1.21 16 30 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.05 1.61 7.70 -2.39 -0.02 1.59 16 33 H 0.10 2.69 5.72 -2.39 -0.01 2.68 16 34 H 0.06 1.99 6.65 -2.39 -0.02 1.98 16 35 H 0.23 3.75 8.06 -2.91 -0.02 3.73 16 36 H 0.09 1.74 4.16 -2.39 -0.01 1.73 16 37 H 0.08 2.25 7.74 -2.39 -0.02 2.23 16 38 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.38 17.08 5.95 -92.71 -0.55 16.53 16 41 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16 Total: -1.00 -60.22 327.69 2.44 -57.78 By element: Atomic # 1 Polarization: 30.85 SS G_CDS: -0.89 Total: 29.96 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: 5.23 Total: 5.13 kcal Atomic # 7 Polarization: -116.73 SS G_CDS: -3.86 Total: -120.59 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.07 Total: -17.35 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -60.22 2.44 -57.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037879820.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.366 kcal (2) G-P(sol) polarization free energy of solvation -60.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds