Wall clock time and date at job start Tue Mar 31 2020 03:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47354 * 2 1 4 4 H 1.09001 * 109.49220 * 305.06234 * 3 2 1 5 5 C 1.53614 * 109.46017 * 65.26819 * 3 2 1 6 6 N 1.46926 * 108.54528 * 174.74132 * 5 3 2 7 7 C 1.34779 * 120.63327 * 126.36767 * 6 5 3 8 8 O 1.21556 * 119.99697 * 3.90561 * 7 6 5 9 9 C 1.47866 * 120.00248 * 183.90957 * 7 6 5 10 10 N 1.34552 * 126.04311 * 352.60987 * 9 7 6 11 11 C 1.30874 * 107.26413 * 180.26758 * 10 9 7 12 12 N 1.34586 * 107.62833 * 0.02562 * 11 10 9 13 13 H 0.97000 * 125.74637 * 179.97438 * 12 11 10 14 14 N 1.28848 * 108.49949 * 359.97438 * 12 11 10 15 15 C 1.46924 * 118.73761 * 306.09908 * 6 5 3 16 16 C 1.53191 * 108.77895 * 53.85478 * 15 6 5 17 17 C 1.53034 * 109.49562 * 185.00011 * 3 2 1 18 18 H 1.09005 * 109.46478 * 58.62623 * 17 3 2 19 19 N 1.46503 * 109.44995 * 298.66074 * 17 3 2 20 20 C 1.36930 * 120.00158 * 154.94128 * 19 17 3 21 21 H 1.07997 * 120.00495 * 359.97438 * 20 19 17 22 22 C 1.38818 * 119.99863 * 179.97438 * 20 19 17 23 23 N 1.31616 * 120.00238 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99840 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47038 * 90.00538 * 24 22 20 26 26 H 1.48500 * 109.46927 * 210.00202 * 24 22 20 27 27 H 1.48504 * 109.47426 * 330.00378 * 24 22 20 28 28 H 1.08999 * 109.46821 * 60.00398 * 1 2 3 29 29 H 1.08997 * 109.47795 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47381 * 300.00835 * 1 2 3 31 31 H 1.09000 * 109.47381 * 239.99165 * 2 1 3 32 32 H 1.08999 * 109.46821 * 119.99602 * 2 1 3 33 33 H 1.09004 * 109.73974 * 55.00308 * 5 3 2 34 34 H 1.09001 * 109.66689 * 294.43479 * 5 3 2 35 35 H 1.08006 * 126.18720 * 180.02562 * 11 10 9 36 36 H 1.09001 * 109.58960 * 173.64830 * 15 6 5 37 37 H 1.09006 * 109.58435 * 293.92810 * 15 6 5 38 38 H 1.09000 * 109.49386 * 65.31641 * 16 15 6 39 39 H 1.09002 * 109.49979 * 185.41687 * 16 15 6 40 40 H 0.97002 * 119.99503 * 334.93993 * 19 17 3 41 41 H 0.96992 * 120.00378 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6048 1.9822 -0.8411 5 6 1.6394 2.1270 1.3155 6 7 2.2451 3.4652 1.3494 7 6 1.4858 4.5574 1.5662 8 8 0.3004 4.4356 1.8064 9 6 2.0946 5.9038 1.5117 10 7 3.4074 6.1750 1.3960 11 6 3.5359 7.4774 1.3896 12 7 2.3046 8.0090 1.5018 13 1 2.0961 8.9561 1.5245 14 7 1.4494 7.0479 1.5739 15 6 3.6952 3.5895 1.1485 16 6 4.0737 2.8880 -0.1597 17 6 3.5652 1.4449 -0.1257 18 1 3.8547 0.9361 -1.0453 19 7 4.1505 0.7482 1.0225 20 6 5.3877 0.1712 0.9154 21 1 5.9320 0.2294 -0.0156 22 6 5.9424 -0.4885 2.0035 23 7 5.2790 -0.5599 3.1380 24 14 7.6299 -1.2762 1.8572 25 1 8.6716 -0.2895 2.2402 26 1 7.7068 -2.4528 2.7599 27 1 7.8528 -1.7123 0.4553 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 1.8934 -0.5140 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.0008 1.5408 2.1605 34 1 0.5542 2.2157 1.3672 35 1 4.4625 8.0264 1.3090 36 1 3.9670 4.6434 1.0899 37 1 4.2209 3.1223 1.9814 38 1 3.6193 3.4141 -0.9993 39 1 5.1579 2.8892 -0.2728 40 1 3.6615 0.6956 1.8586 41 1 5.6664 -1.0211 3.8982 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037942065.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:57 Heat of formation + Delta-G solvation = 77.580207 kcal Electronic energy + Delta-G solvation = -24507.694485 eV Core-core repulsion = 21039.343584 eV Total energy + Delta-G solvation = -3468.350901 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.63375 -39.78390 -37.65199 -34.62958 -33.69187 -33.38702 -31.58796 -31.51387 -29.27958 -28.51203 -25.85235 -23.90512 -23.55367 -23.11876 -22.94480 -20.68008 -19.92054 -18.94658 -18.04021 -17.26138 -16.55994 -16.44478 -16.12100 -15.07662 -14.82847 -14.41909 -14.30045 -13.90255 -13.58343 -13.18378 -13.12984 -12.90236 -12.57574 -12.42662 -12.03750 -11.58459 -11.33490 -11.09337 -10.96814 -10.89392 -10.79678 -10.67542 -10.32581 -10.20420 -10.11525 -10.04177 -9.87225 -9.69835 -9.48960 -9.34482 -8.77712 -8.11446 -6.88226 -5.71743 -2.99248 1.31527 1.99101 2.39549 3.16944 3.45999 3.47554 3.51679 3.53036 4.02165 4.50123 4.63748 4.65721 5.22696 5.36816 5.46120 5.59668 5.65481 5.74265 5.78801 5.88102 5.91379 5.96527 5.98598 6.16914 6.20061 6.28103 6.41497 6.45780 6.47093 6.55062 6.64140 6.72964 6.80221 6.90338 6.98445 7.08603 7.19954 7.67245 7.75411 7.89388 8.38927 8.46957 9.58412 10.16525 10.51722 11.50942 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.015480 B = 0.005137 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.316459 B = 5449.439267 C = 6686.545116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.110 4.110 3 C -0.102 4.102 4 H 0.066 0.934 5 C 0.119 3.881 6 N -0.575 5.575 7 C 0.605 3.395 8 O -0.535 6.535 9 C 0.164 3.836 10 N -0.473 5.473 11 C 0.195 3.805 12 N -0.404 5.404 13 H 0.451 0.549 14 N -0.255 5.255 15 C 0.068 3.932 16 C -0.144 4.144 17 C 0.176 3.824 18 H 0.049 0.951 19 N -0.718 5.718 20 C -0.233 4.233 21 H 0.069 0.931 22 C -0.013 4.013 23 N -0.933 5.933 24 Si 0.903 3.097 25 H -0.292 1.292 26 H -0.293 1.293 27 H -0.283 1.283 28 H 0.047 0.953 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.230 0.770 36 H 0.141 0.859 37 H 0.078 0.922 38 H 0.043 0.957 39 H 0.072 0.928 40 H 0.383 0.617 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.873 15.957 -5.685 17.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.122 4.122 4 H 0.084 0.916 5 C -0.003 4.003 6 N -0.306 5.306 7 C 0.388 3.612 8 O -0.410 6.410 9 C -0.117 4.117 10 N -0.200 5.200 11 C -0.102 4.102 12 N -0.126 5.126 13 H 0.297 0.703 14 N -0.094 5.094 15 C -0.054 4.054 16 C -0.185 4.185 17 C 0.066 3.934 18 H 0.067 0.933 19 N -0.360 5.360 20 C -0.364 4.364 21 H 0.087 0.913 22 C -0.208 4.208 23 N -0.582 5.582 24 Si 0.735 3.265 25 H -0.219 1.219 26 H -0.220 1.220 27 H -0.209 1.209 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.246 0.754 36 H 0.157 0.843 37 H 0.096 0.904 38 H 0.062 0.938 39 H 0.090 0.910 40 H 0.219 0.781 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.760 15.425 -5.561 17.379 hybrid contribution 1.210 0.350 0.246 1.284 sum -4.550 15.775 -5.315 17.257 Atomic orbital electron populations 1.21860 0.96859 1.01002 1.01374 1.21419 0.94224 0.95751 1.03394 1.21822 0.97599 0.96037 0.96749 0.91577 1.21877 0.98717 0.81098 0.98602 1.47897 1.09659 1.05398 1.67647 1.16369 0.85221 0.81167 0.78449 1.90787 1.14874 1.85536 1.49817 1.23961 0.87118 0.94560 1.06071 1.71064 1.16721 1.11669 1.20502 1.26884 0.91920 0.90882 1.00534 1.45236 1.05297 1.10333 1.51727 0.70301 1.74364 1.19652 0.96274 1.19063 1.22970 0.77432 1.06092 0.98869 1.22458 1.01492 0.98610 0.95978 1.20267 0.89616 0.91094 0.92442 0.93344 1.42458 1.19071 1.63936 1.10553 1.19218 0.93659 1.26610 0.96957 0.91317 1.24681 0.98459 1.01662 0.96044 1.69646 1.38035 1.48287 1.02209 0.86252 0.84598 0.78734 0.76960 1.21911 1.21985 1.20916 0.93402 0.93190 0.92739 0.92017 0.90441 0.90306 0.89545 0.75412 0.84300 0.90356 0.93823 0.90972 0.78134 0.93623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.68 37.16 0.36 -1.80 16 2 C -0.11 -1.81 5.19 -26.73 -0.14 -1.95 16 3 C -0.10 -1.74 2.15 -90.28 -0.19 -1.94 16 4 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 5 C 0.12 2.14 5.04 -3.49 -0.02 2.12 16 6 N -0.58 -10.37 2.97 -173.61 -0.51 -10.88 16 7 C 0.60 11.17 7.71 -12.32 -0.09 11.08 16 8 O -0.53 -11.11 16.52 5.32 0.09 -11.02 16 9 C 0.16 2.57 7.72 -156.36 -1.21 1.37 16 10 N -0.47 -6.24 7.71 -12.36 -0.10 -6.33 16 11 C 0.19 1.53 13.14 -90.48 -1.19 0.35 16 12 N -0.40 -3.18 6.93 29.57 0.21 -2.98 16 13 H 0.45 1.37 8.96 -190.21 -1.71 -0.33 16 14 N -0.25 -3.48 12.30 32.07 0.39 -3.08 16 15 C 0.07 1.22 6.05 -3.71 -0.02 1.19 16 16 C -0.14 -2.57 5.78 -26.61 -0.15 -2.72 16 17 C 0.18 3.41 2.53 -67.89 -0.17 3.24 16 18 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 19 N -0.72 -16.91 3.72 -53.38 -0.20 -17.11 16 20 C -0.23 -6.18 9.93 -15.06 -0.15 -6.33 16 21 H 0.07 1.79 7.83 -52.49 -0.41 1.37 16 22 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 23 N -0.93 -27.52 13.06 55.49 0.72 -26.79 16 24 Si 0.90 22.04 29.55 -169.99 -5.02 17.02 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 27 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.77 6.70 -51.93 -0.35 0.42 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.08 1.47 7.70 -51.93 -0.40 1.07 16 33 H 0.08 1.55 6.63 -51.93 -0.34 1.21 16 34 H 0.09 1.53 5.76 -51.93 -0.30 1.23 16 35 H 0.23 0.54 8.06 -52.48 -0.42 0.11 16 36 H 0.14 2.29 3.65 -80.37 -0.29 2.00 16 37 H 0.08 1.64 7.74 -51.93 -0.40 1.24 16 38 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 40 H 0.38 9.71 5.93 -40.82 -0.24 9.46 16 41 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 328.71 15.07 4.95 4.95 Total: -1.00 -34.35 328.71 -9.50 -43.85 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -6.96 Total: 8.22 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: -3.07 Total: 4.15 kcal Atomic # 7 Polarization: -67.69 SS G_CDS: 0.52 Total: -67.18 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.09 Total: -11.02 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.35 -9.50 -43.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037942065.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.428 kcal (2) G-P(sol) polarization free energy of solvation -34.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds