Wall clock time and date at job start Tue Mar 31 2020 03:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47354 * 2 1 4 4 H 1.09001 * 109.49220 * 305.06234 * 3 2 1 5 5 C 1.53614 * 109.46017 * 65.26819 * 3 2 1 6 6 N 1.46926 * 108.54528 * 174.74132 * 5 3 2 7 7 C 1.34779 * 120.63327 * 126.36767 * 6 5 3 8 8 O 1.21556 * 119.99697 * 3.90561 * 7 6 5 9 9 C 1.47866 * 120.00248 * 183.90957 * 7 6 5 10 10 N 1.34552 * 126.04311 * 352.60987 * 9 7 6 11 11 C 1.30874 * 107.26413 * 180.26758 * 10 9 7 12 12 N 1.34586 * 107.62833 * 0.02562 * 11 10 9 13 13 H 0.97000 * 125.74637 * 179.97438 * 12 11 10 14 14 N 1.28848 * 108.49949 * 359.97438 * 12 11 10 15 15 C 1.46924 * 118.73761 * 306.09908 * 6 5 3 16 16 C 1.53191 * 108.77895 * 53.85478 * 15 6 5 17 17 C 1.53034 * 109.49562 * 185.00011 * 3 2 1 18 18 H 1.09005 * 109.46478 * 58.62623 * 17 3 2 19 19 N 1.46503 * 109.44995 * 298.66074 * 17 3 2 20 20 C 1.36930 * 120.00158 * 154.94128 * 19 17 3 21 21 H 1.07997 * 120.00495 * 359.97438 * 20 19 17 22 22 C 1.38818 * 119.99863 * 179.97438 * 20 19 17 23 23 N 1.31616 * 120.00238 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99840 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47038 * 90.00538 * 24 22 20 26 26 H 1.48500 * 109.46927 * 210.00202 * 24 22 20 27 27 H 1.48504 * 109.47426 * 330.00378 * 24 22 20 28 28 H 1.08999 * 109.46821 * 60.00398 * 1 2 3 29 29 H 1.08997 * 109.47795 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47381 * 300.00835 * 1 2 3 31 31 H 1.09000 * 109.47381 * 239.99165 * 2 1 3 32 32 H 1.08999 * 109.46821 * 119.99602 * 2 1 3 33 33 H 1.09004 * 109.73974 * 55.00308 * 5 3 2 34 34 H 1.09001 * 109.66689 * 294.43479 * 5 3 2 35 35 H 1.08006 * 126.18720 * 180.02562 * 11 10 9 36 36 H 1.09001 * 109.58960 * 173.64830 * 15 6 5 37 37 H 1.09006 * 109.58435 * 293.92810 * 15 6 5 38 38 H 1.09000 * 109.49386 * 65.31641 * 16 15 6 39 39 H 1.09002 * 109.49979 * 185.41687 * 16 15 6 40 40 H 0.97002 * 119.99503 * 334.93993 * 19 17 3 41 41 H 0.96992 * 120.00378 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6048 1.9822 -0.8411 5 6 1.6394 2.1270 1.3155 6 7 2.2451 3.4652 1.3494 7 6 1.4858 4.5574 1.5662 8 8 0.3004 4.4356 1.8064 9 6 2.0946 5.9038 1.5117 10 7 3.4074 6.1750 1.3960 11 6 3.5359 7.4774 1.3896 12 7 2.3046 8.0090 1.5018 13 1 2.0961 8.9561 1.5245 14 7 1.4494 7.0479 1.5739 15 6 3.6952 3.5895 1.1485 16 6 4.0737 2.8880 -0.1597 17 6 3.5652 1.4449 -0.1257 18 1 3.8547 0.9361 -1.0453 19 7 4.1505 0.7482 1.0225 20 6 5.3877 0.1712 0.9154 21 1 5.9320 0.2294 -0.0156 22 6 5.9424 -0.4885 2.0035 23 7 5.2790 -0.5599 3.1380 24 14 7.6299 -1.2762 1.8572 25 1 8.6716 -0.2895 2.2402 26 1 7.7068 -2.4528 2.7599 27 1 7.8528 -1.7123 0.4553 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 1.8934 -0.5140 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.0008 1.5408 2.1605 34 1 0.5542 2.2157 1.3672 35 1 4.4625 8.0264 1.3090 36 1 3.9670 4.6434 1.0899 37 1 4.2209 3.1223 1.9814 38 1 3.6193 3.4141 -0.9993 39 1 5.1579 2.8892 -0.2728 40 1 3.6615 0.6956 1.8586 41 1 5.6664 -1.0211 3.8982 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037942065.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:56 Heat of formation + Delta-G solvation = 54.859577 kcal Electronic energy + Delta-G solvation = -24508.679726 eV Core-core repulsion = 21039.343584 eV Total energy + Delta-G solvation = -3469.336142 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.51641 -41.22757 -39.16029 -36.04072 -35.38291 -34.40570 -33.36849 -32.43434 -30.95317 -30.00233 -27.25171 -25.59067 -25.06934 -24.43268 -23.84136 -22.10622 -21.08461 -20.08875 -19.37064 -19.17444 -17.87644 -17.45633 -17.36358 -16.59352 -16.09239 -15.96757 -15.82514 -15.45812 -15.07159 -14.75608 -14.50018 -14.34814 -14.08267 -13.73178 -13.44807 -12.96385 -12.82759 -12.74741 -12.62967 -12.33075 -12.25550 -12.07083 -11.82314 -11.79001 -11.59512 -11.44609 -11.42960 -11.12693 -10.94841 -10.79534 -10.41308 -9.60886 -8.86586 -7.84092 -5.10050 0.27827 1.13844 1.51984 1.52419 1.52831 1.60603 2.14849 2.20721 2.63551 3.01586 3.49248 3.50648 3.80677 3.89250 4.01238 4.11912 4.14193 4.41875 4.46288 4.48037 4.49101 4.65472 4.70964 4.80532 4.90170 5.01102 5.02624 5.10832 5.20154 5.21385 5.27518 5.36934 5.41553 5.55036 5.63366 5.64812 5.77614 6.03851 6.33718 6.37421 6.84357 7.10668 7.44645 8.21368 8.45461 9.39597 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.015480 B = 0.005137 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.316459 B = 5449.439267 C = 6686.545116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.105 4.105 3 C -0.091 4.091 4 H 0.085 0.915 5 C 0.123 3.877 6 N -0.577 5.577 7 C 0.601 3.399 8 O -0.568 6.568 9 C 0.133 3.867 10 N -0.509 5.509 11 C 0.225 3.775 12 N -0.380 5.380 13 H 0.473 0.527 14 N -0.273 5.273 15 C 0.077 3.923 16 C -0.135 4.135 17 C 0.170 3.830 18 H 0.048 0.952 19 N -0.723 5.723 20 C -0.224 4.224 21 H 0.076 0.924 22 C -0.074 4.074 23 N -0.971 5.971 24 Si 0.965 3.035 25 H -0.290 1.290 26 H -0.303 1.303 27 H -0.271 1.271 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.045 0.955 33 H 0.052 0.948 34 H 0.089 0.911 35 H 0.289 0.711 36 H 0.163 0.837 37 H 0.040 0.960 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.372 0.628 41 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.195 18.364 -7.491 20.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.143 4.143 3 C -0.110 4.110 4 H 0.103 0.897 5 C 0.001 3.999 6 N -0.307 5.307 7 C 0.386 3.614 8 O -0.446 6.446 9 C -0.146 4.146 10 N -0.236 5.236 11 C -0.070 4.070 12 N -0.105 5.105 13 H 0.325 0.675 14 N -0.114 5.114 15 C -0.045 4.045 16 C -0.176 4.176 17 C 0.061 3.939 18 H 0.066 0.934 19 N -0.364 5.364 20 C -0.356 4.356 21 H 0.094 0.906 22 C -0.266 4.266 23 N -0.623 5.623 24 Si 0.795 3.205 25 H -0.218 1.218 26 H -0.230 1.230 27 H -0.196 1.196 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.107 0.893 35 H 0.304 0.696 36 H 0.179 0.821 37 H 0.058 0.942 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.206 0.794 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.079 17.891 -7.421 20.024 hybrid contribution 0.981 -0.213 0.774 1.268 sum -4.098 17.678 -6.647 19.326 Atomic orbital electron populations 1.21794 0.94686 1.02003 1.01904 1.21340 0.96112 0.94928 1.01897 1.21733 0.95981 0.96568 0.96748 0.89689 1.21745 0.98713 0.81279 0.98151 1.47909 1.09682 1.05414 1.67719 1.16753 0.84913 0.82354 0.77372 1.90747 1.16247 1.86377 1.51190 1.23343 0.88346 0.93689 1.09263 1.70731 1.15618 1.14825 1.22458 1.27832 0.93216 0.89322 0.96632 1.45205 1.04765 1.10687 1.49855 0.67518 1.74250 1.21354 0.96716 1.19101 1.22937 0.77001 1.07227 0.97292 1.22330 1.01102 0.97377 0.96768 1.20493 0.91018 0.91644 0.90728 0.93378 1.42570 1.18356 1.64192 1.11307 1.19585 0.94330 1.24949 0.96752 0.90649 1.25390 1.01869 1.03347 0.96030 1.69814 1.39616 1.49983 1.02862 0.85258 0.80759 0.77352 0.77108 1.21784 1.23008 1.19580 0.91770 0.92022 0.93231 0.91703 0.93638 0.92967 0.89322 0.69616 0.82110 0.94194 0.91455 0.91637 0.79446 0.94471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.00 9.68 71.98 0.70 -3.30 16 2 C -0.10 -3.46 5.19 30.60 0.16 -3.30 16 3 C -0.09 -3.08 2.15 -10.58 -0.02 -3.10 16 4 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 5 C 0.12 4.58 5.04 86.50 0.44 5.01 16 6 N -0.58 -21.16 2.97 -821.45 -2.44 -23.59 16 7 C 0.60 22.42 7.71 86.79 0.67 23.09 16 8 O -0.57 -24.08 16.52 -3.89 -0.06 -24.14 16 9 C 0.13 4.05 7.72 137.13 1.06 5.11 16 10 N -0.51 -12.26 7.71 -193.03 -1.49 -13.75 16 11 C 0.23 2.59 13.14 180.30 2.37 4.96 16 12 N -0.38 -4.64 6.93 -60.37 -0.42 -5.06 16 13 H 0.47 0.93 8.96 -219.80 -1.97 -1.04 16 14 N -0.27 -6.96 12.30 -52.44 -0.65 -7.61 16 15 C 0.08 2.77 6.05 86.36 0.52 3.29 16 16 C -0.14 -4.69 5.78 30.67 0.18 -4.51 16 17 C 0.17 6.56 2.53 45.02 0.11 6.67 16 18 H 0.05 1.87 8.08 -2.38 -0.02 1.85 16 19 N -0.72 -34.94 3.72 -322.81 -1.20 -36.14 16 20 C -0.22 -11.99 9.93 84.04 0.83 -11.16 16 21 H 0.08 3.87 7.83 -2.91 -0.02 3.85 16 22 C -0.07 -4.21 5.50 84.86 0.47 -3.74 16 23 N -0.97 -59.24 13.06 21.65 0.28 -58.96 16 24 Si 0.96 45.92 29.55 68.60 2.03 47.95 16 25 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 26 H -0.30 -14.78 7.11 99.48 0.71 -14.07 16 27 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 28 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.05 1.39 6.70 -2.39 -0.02 1.38 16 31 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.04 1.80 7.70 -2.39 -0.02 1.78 16 33 H 0.05 2.20 6.63 -2.38 -0.02 2.19 16 34 H 0.09 3.23 5.76 -2.39 -0.01 3.22 16 35 H 0.29 -0.51 8.06 -2.91 -0.02 -0.54 16 36 H 0.16 5.16 3.65 -58.54 -0.21 4.95 16 37 H 0.04 1.73 7.74 -2.38 -0.02 1.72 16 38 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.37 19.76 5.93 -92.71 -0.55 19.21 16 41 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 Total: -1.00 -77.99 328.71 1.89 -76.10 By element: Atomic # 1 Polarization: 27.83 SS G_CDS: -1.65 Total: 26.18 kcal Atomic # 6 Polarization: 11.54 SS G_CDS: 7.48 Total: 19.02 kcal Atomic # 7 Polarization: -139.20 SS G_CDS: -5.91 Total: -145.11 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.06 Total: -24.14 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -77.99 1.89 -76.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037942065.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.963 kcal (2) G-P(sol) polarization free energy of solvation -77.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds