Wall clock time and date at job start Tue Mar 31 2020 03:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.46935 * 2 1 4 4 H 1.08997 * 109.52798 * 54.91234 * 3 2 1 5 5 C 1.53199 * 109.49449 * 294.83340 * 3 2 1 6 6 N 1.46926 * 108.77605 * 185.41302 * 5 3 2 7 7 C 1.34776 * 120.63195 * 233.63468 * 6 5 3 8 8 O 1.21554 * 119.99959 * 354.40603 * 7 6 5 9 9 C 1.47872 * 119.99811 * 174.41052 * 7 6 5 10 10 N 1.34553 * 126.04892 * 352.66070 * 9 7 6 11 11 C 1.30869 * 107.26820 * 179.89598 * 10 9 7 12 12 N 1.34581 * 107.62548 * 0.37110 * 11 10 9 13 13 H 0.97004 * 125.75389 * 179.73366 * 12 11 10 14 14 N 1.28849 * 108.50341 * 359.76310 * 12 11 10 15 15 C 1.46924 * 118.73489 * 53.61178 * 6 5 3 16 16 C 1.53202 * 108.77745 * 306.38942 * 15 6 5 17 17 C 1.53031 * 109.49754 * 174.99961 * 3 2 1 18 18 H 1.09001 * 109.44853 * 301.32467 * 17 3 2 19 19 N 1.46499 * 109.46228 * 61.29297 * 17 3 2 20 20 C 1.36942 * 120.00026 * 205.06869 * 19 17 3 21 21 H 1.07994 * 120.00099 * 0.02562 * 20 19 17 22 22 C 1.38816 * 119.99667 * 179.97438 * 20 19 17 23 23 N 1.31618 * 119.99500 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 120.00275 * 0.02562 * 22 20 19 25 25 H 1.48503 * 109.46919 * 89.99707 * 24 22 20 26 26 H 1.48503 * 109.46910 * 330.00054 * 24 22 20 27 27 H 1.48498 * 109.46934 * 210.00072 * 24 22 20 28 28 H 1.08998 * 109.46948 * 300.00263 * 1 2 3 29 29 H 1.09001 * 109.47053 * 60.00686 * 1 2 3 30 30 H 1.09002 * 109.46619 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46948 * 239.99737 * 2 1 3 32 32 H 1.09001 * 109.47053 * 119.99314 * 2 1 3 33 33 H 1.08999 * 109.58456 * 65.63091 * 5 3 2 34 34 H 1.08997 * 109.58967 * 305.20464 * 5 3 2 35 35 H 1.07995 * 126.18614 * 180.12727 * 11 10 9 36 36 H 1.09004 * 109.58553 * 186.60792 * 15 6 5 37 37 H 1.08997 * 109.58882 * 66.18080 * 15 6 5 38 38 H 1.09000 * 109.49373 * 294.68561 * 16 15 6 39 39 H 1.08994 * 109.52408 * 174.60652 * 16 15 6 40 40 H 0.97003 * 119.99986 * 25.06698 * 19 17 3 41 41 H 0.96999 * 119.99845 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9828 0.8406 5 6 1.6386 2.1267 -1.3106 6 7 2.2451 3.4643 -1.3509 7 6 1.4856 4.5564 -1.5675 8 8 0.3057 4.4334 -1.8326 9 6 2.0877 5.9043 -1.4828 10 7 3.3348 6.1897 -1.0661 11 6 3.4820 7.4879 -1.1410 12 7 2.3249 8.0036 -1.5953 13 1 2.1442 8.9447 -1.7461 14 7 1.4971 7.0368 -1.7958 15 6 3.6952 3.5887 -1.1500 16 6 4.0736 2.8882 0.1588 17 6 3.5652 1.4451 0.1257 18 1 3.8543 0.9371 1.0458 19 7 4.1507 0.7475 -1.0218 20 6 5.3880 0.1706 -0.9139 21 1 5.9319 0.2296 0.0172 22 6 5.9426 -0.4908 -2.0010 23 7 7.1320 -1.0448 -1.8975 24 14 5.0014 -0.5933 -3.6114 25 1 5.3466 0.5743 -4.4616 26 1 3.5427 -0.5891 -3.3333 27 1 5.3668 -1.8465 -4.3193 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3632 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5137 0.8901 33 1 0.5533 2.2160 -1.3587 34 1 1.9965 1.5376 -2.1550 35 1 4.3699 8.0451 -0.8812 36 1 3.9669 4.6428 -1.0920 37 1 4.2209 3.1189 -1.9813 38 1 3.6192 3.4149 0.9979 39 1 5.1576 2.8895 0.2725 40 1 3.6620 0.6943 -1.8580 41 1 7.5193 -1.5073 -2.6570 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037942066.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:58 Heat of formation + Delta-G solvation = 57.160742 kcal Electronic energy + Delta-G solvation = -24625.441671 eV Core-core repulsion = 21156.205316 eV Total energy + Delta-G solvation = -3469.236356 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -44.52570 -41.30957 -39.26325 -36.12292 -35.46128 -34.41939 -33.54324 -32.44644 -31.43343 -30.15161 -27.35256 -25.44131 -25.00395 -24.42701 -23.86363 -22.11818 -21.12470 -20.12829 -19.83190 -19.32437 -17.93851 -17.45057 -17.38486 -16.64856 -16.24551 -16.06130 -15.83714 -15.41615 -15.07349 -14.88165 -14.57412 -14.42167 -14.23237 -13.74804 -13.69108 -13.16621 -12.95655 -12.79413 -12.67282 -12.43902 -12.28059 -11.99938 -11.85591 -11.80442 -11.64259 -11.51726 -11.48092 -11.19907 -11.01288 -10.80966 -10.49685 -9.67796 -9.19358 -7.96073 -5.25779 0.26083 1.11775 1.37256 1.38066 1.44695 1.49633 2.12428 2.18494 2.50669 2.98884 3.36573 3.48180 3.64093 3.75549 3.96599 3.99742 4.06734 4.36137 4.40127 4.41610 4.45085 4.61879 4.64842 4.77618 4.84490 4.96124 5.00178 5.07996 5.14881 5.18600 5.24459 5.32984 5.37491 5.50217 5.59248 5.73470 5.87171 6.01432 6.26474 6.29335 6.81181 7.08411 7.14864 7.92187 8.10663 9.25996 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.015565 B = 0.005517 C = 0.004702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.501699 B = 5073.933923 C = 5953.704209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.109 4.109 3 C -0.094 4.094 4 H 0.090 0.910 5 C 0.119 3.881 6 N -0.581 5.581 7 C 0.605 3.395 8 O -0.564 6.564 9 C 0.131 3.869 10 N -0.507 5.507 11 C 0.226 3.774 12 N -0.380 5.380 13 H 0.473 0.527 14 N -0.273 5.273 15 C 0.075 3.925 16 C -0.131 4.131 17 C 0.175 3.825 18 H 0.052 0.948 19 N -0.741 5.741 20 C -0.208 4.208 21 H 0.064 0.936 22 C -0.058 4.058 23 N -0.984 5.984 24 Si 0.934 3.066 25 H -0.285 1.285 26 H -0.257 1.257 27 H -0.299 1.299 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.048 0.952 32 H 0.066 0.934 33 H 0.094 0.906 34 H 0.054 0.946 35 H 0.288 0.712 36 H 0.162 0.838 37 H 0.042 0.958 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.360 0.640 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.340 19.966 3.800 22.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.147 4.147 3 C -0.114 4.114 4 H 0.108 0.892 5 C -0.003 4.003 6 N -0.311 5.311 7 C 0.390 3.610 8 O -0.441 6.441 9 C -0.149 4.149 10 N -0.234 5.234 11 C -0.070 4.070 12 N -0.106 5.106 13 H 0.325 0.675 14 N -0.115 5.115 15 C -0.047 4.047 16 C -0.172 4.172 17 C 0.067 3.933 18 H 0.070 0.930 19 N -0.385 5.385 20 C -0.339 4.339 21 H 0.082 0.918 22 C -0.249 4.249 23 N -0.636 5.636 24 Si 0.764 3.236 25 H -0.212 1.212 26 H -0.182 1.182 27 H -0.226 1.226 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.112 0.888 34 H 0.072 0.928 35 H 0.303 0.697 36 H 0.178 0.822 37 H 0.061 0.939 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.194 0.806 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.194 19.491 3.655 22.772 hybrid contribution 0.208 0.021 -1.317 1.334 sum -10.986 19.512 2.337 22.514 Atomic orbital electron populations 1.21807 0.94513 1.02129 1.02064 1.21403 0.96324 0.94814 1.02187 1.21711 0.95564 0.96822 0.97287 0.89160 1.21733 0.99250 0.81330 0.98020 1.47908 1.09551 1.05479 1.68207 1.16707 0.84806 0.82266 0.77232 1.90755 1.16580 1.86371 1.50433 1.23377 0.90682 0.93925 1.06899 1.70748 1.15535 1.14429 1.22725 1.27811 0.93960 0.89668 0.95561 1.45215 1.09220 1.10913 1.45226 0.67543 1.74254 1.20697 0.96667 1.19852 1.22921 0.77044 1.07352 0.97370 1.22245 1.01132 0.96794 0.97021 1.20473 0.91004 0.91648 0.90218 0.93028 1.42799 1.18235 1.65756 1.11725 1.19024 0.92827 1.24484 0.97614 0.91827 1.25232 0.97450 1.01424 1.00777 1.69846 1.18370 1.43674 1.31669 0.85716 0.79590 0.76721 0.81612 1.21181 1.18236 1.22573 0.91784 0.92967 0.91962 0.93367 0.91490 0.88766 0.92767 0.69714 0.82239 0.93926 0.90991 0.91837 0.80580 0.93676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 9.68 71.98 0.70 -2.89 16 2 C -0.11 -3.26 5.19 30.60 0.16 -3.10 16 3 C -0.09 -2.91 2.14 -10.72 -0.02 -2.94 16 4 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 5 C 0.12 3.92 5.01 86.37 0.43 4.35 16 6 N -0.58 -19.38 2.97 -822.26 -2.44 -21.82 16 7 C 0.60 20.82 7.70 86.79 0.67 21.49 16 8 O -0.56 -22.25 16.53 -3.88 -0.06 -22.31 16 9 C 0.13 3.70 7.70 137.13 1.06 4.76 16 10 N -0.51 -11.21 7.77 -193.04 -1.50 -12.71 16 11 C 0.23 2.30 13.14 180.30 2.37 4.67 16 12 N -0.38 -4.20 6.93 -60.38 -0.42 -4.62 16 13 H 0.47 0.50 8.96 -219.79 -1.97 -1.47 16 14 N -0.27 -6.55 12.30 -52.44 -0.65 -7.20 16 15 C 0.07 2.47 6.07 86.37 0.52 3.00 16 16 C -0.13 -4.36 5.78 30.68 0.18 -4.18 16 17 C 0.17 6.38 2.53 45.02 0.11 6.50 16 18 H 0.05 1.97 8.08 -2.39 -0.02 1.95 16 19 N -0.74 -33.23 3.52 -322.83 -1.14 -34.36 16 20 C -0.21 -11.42 10.41 84.03 0.87 -10.55 16 21 H 0.06 3.80 8.06 -2.91 -0.02 3.77 16 22 C -0.06 -3.36 5.50 84.86 0.47 -2.89 16 23 N -0.98 -62.56 13.97 21.65 0.30 -62.26 16 24 Si 0.93 46.16 27.74 68.60 1.90 48.06 16 25 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 26 H -0.26 -11.69 6.52 99.48 0.65 -11.04 16 27 H -0.30 -15.04 7.11 99.48 0.71 -14.33 16 28 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.05 1.28 6.70 -2.39 -0.02 1.27 16 30 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.05 1.66 7.70 -2.39 -0.02 1.64 16 32 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.09 3.04 5.76 -2.39 -0.01 3.03 16 34 H 0.05 1.94 6.64 -2.39 -0.02 1.93 16 35 H 0.29 -0.79 8.06 -2.91 -0.02 -0.81 16 36 H 0.16 4.76 3.68 -52.83 -0.19 4.56 16 37 H 0.04 1.64 7.74 -2.39 -0.02 1.62 16 38 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.36 16.21 3.81 -92.71 -0.35 15.85 16 41 H 0.25 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -79.96 325.65 2.02 -77.94 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: -1.49 Total: 21.07 kcal Atomic # 6 Polarization: 10.70 SS G_CDS: 7.51 Total: 18.22 kcal Atomic # 7 Polarization: -137.13 SS G_CDS: -5.84 Total: -142.97 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.06 Total: -22.31 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 1.90 Total: 48.06 kcal Total: -79.96 2.02 -77.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037942066.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.105 kcal (2) G-P(sol) polarization free energy of solvation -79.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds