Wall clock time and date at job start Tue Mar 31 2020 03:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46835 * 2 1 4 4 N 1.46506 * 109.46688 * 180.02562 * 3 2 1 5 5 C 1.34808 * 126.59290 * 125.00541 * 4 3 2 6 6 C 1.36599 * 106.84244 * 179.97438 * 5 4 3 7 7 C 1.47514 * 125.77296 * 179.97438 * 6 5 4 8 8 O 1.21598 * 120.00330 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99893 * 179.97438 * 7 6 5 10 10 C 1.46505 * 119.99889 * 180.02562 * 9 7 6 11 11 C 1.52994 * 109.47021 * 179.97438 * 10 9 7 12 12 H 1.09006 * 112.96568 * 53.32311 * 11 10 9 13 13 C 1.53947 * 113.77034 * 184.99754 * 11 10 9 14 14 C 1.53949 * 86.29067 * 137.90847 * 13 11 10 15 15 N 1.47581 * 86.11920 * 336.39822 * 14 13 11 16 16 C 1.36932 * 134.49298 * 204.64138 * 15 14 13 17 17 H 1.08003 * 119.99655 * 179.97438 * 16 15 14 18 18 C 1.38812 * 120.00058 * 359.97438 * 16 15 14 19 19 N 1.31616 * 119.99953 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99780 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47399 * 59.99955 * 20 18 16 22 22 H 1.48504 * 109.46810 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.46939 * 299.99294 * 20 18 16 24 24 N 1.34404 * 108.45520 * 359.97438 * 6 5 4 25 25 N 1.28768 * 109.51970 * 359.70922 * 24 6 5 26 26 H 1.09003 * 109.46905 * 299.99371 * 1 2 3 27 27 H 1.08990 * 109.47270 * 60.00091 * 1 2 3 28 28 H 1.08995 * 109.46933 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46987 * 240.00126 * 2 1 3 30 30 H 1.09000 * 109.47102 * 119.99952 * 2 1 3 31 31 H 1.08999 * 109.47230 * 60.00274 * 3 2 1 32 32 H 1.09000 * 109.47236 * 299.99870 * 3 2 1 33 33 H 1.08003 * 126.58133 * 359.97308 * 5 4 3 34 34 H 0.96996 * 120.00025 * 0.02562 * 9 7 6 35 35 H 1.09002 * 109.47064 * 300.00395 * 10 9 7 36 36 H 1.09002 * 109.46832 * 60.00335 * 10 9 7 37 37 H 1.08997 * 113.74616 * 252.25389 * 13 11 10 38 38 H 1.08998 * 113.74173 * 23.46446 * 13 11 10 39 39 H 1.09005 * 113.76361 * 90.69749 * 14 13 11 40 40 H 1.08998 * 113.77377 * 221.98284 * 14 13 11 41 41 H 0.96998 * 119.99728 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4425 -0.0006 5 6 4.3083 2.0635 -0.8874 6 6 5.5941 1.7991 -0.5096 7 6 6.8099 2.2779 -1.1942 8 8 6.7146 2.9724 -2.1878 9 7 8.0263 1.9456 -0.7184 10 6 9.2338 2.4216 -1.3980 11 6 10.4710 1.9066 -0.6599 12 1 10.4628 0.8258 -0.5186 13 6 11.7983 2.4491 -1.2201 14 6 12.2335 2.6170 0.2471 15 7 10.7929 2.6663 0.5638 16 6 10.0523 3.2020 1.5835 17 1 8.9773 3.0979 1.5825 18 6 10.6833 3.8786 2.6184 19 7 11.9934 4.0049 2.6197 20 14 9.6730 4.6087 4.0097 21 1 8.9197 3.5277 4.6946 22 1 10.5773 5.2749 4.9812 23 1 8.7191 5.6046 3.4590 24 7 5.5642 1.0289 0.5915 25 7 4.3412 0.8029 0.9254 26 1 -0.3633 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8900 33 1 3.9954 2.6563 -1.7342 34 1 8.1023 1.3913 0.0740 35 1 9.2425 2.0532 -2.4238 36 1 9.2418 3.5116 -1.4033 37 1 12.3793 1.7072 -1.7680 38 1 11.6949 3.3907 -1.7593 39 1 12.7437 1.7450 0.6564 40 1 12.7608 3.5501 0.4449 41 1 12.4342 4.4781 3.3427 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038854898.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:36 Heat of formation + Delta-G solvation = 107.935682 kcal Electronic energy + Delta-G solvation = -23038.987199 eV Core-core repulsion = 19571.952610 eV Total energy + Delta-G solvation = -3467.034589 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.21021 -39.11581 -37.79068 -36.26755 -34.05411 -32.84149 -32.10512 -30.93807 -28.14465 -27.75470 -27.01110 -23.66629 -23.29427 -23.01819 -21.80599 -21.65390 -20.11211 -19.10454 -18.08543 -16.69592 -16.34749 -16.14507 -15.70034 -15.43221 -15.12034 -14.70281 -14.44251 -14.14898 -13.90722 -13.66687 -13.20684 -13.14233 -12.81529 -12.54993 -12.25699 -11.95156 -11.81601 -11.46357 -11.36145 -11.16451 -11.04051 -10.94699 -10.67129 -10.50558 -10.43572 -10.06316 -9.74392 -9.68948 -9.34403 -9.29286 -8.72239 -8.51872 -6.82434 -5.69136 -3.01138 1.09839 1.82573 1.90566 3.44976 3.47786 3.49388 3.51224 3.58359 3.99613 4.21648 4.27808 4.50507 4.55829 4.74489 4.75415 4.88355 4.98324 5.08447 5.20563 5.26257 5.46223 5.46635 5.53861 5.66656 5.68923 5.74767 5.86240 5.98693 6.13366 6.25534 6.36062 6.45729 6.68015 6.76395 6.91870 7.31891 7.47314 7.66456 7.79838 8.06157 8.06343 8.52863 9.12721 9.78886 10.66383 11.47727 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.017300 B = 0.003747 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.109844 B = 7471.198358 C = 8639.148358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.138 4.138 3 C 0.121 3.879 4 N -0.365 5.365 5 C 0.088 3.912 6 C -0.094 4.094 7 C 0.599 3.401 8 O -0.552 6.552 9 N -0.696 5.696 10 C 0.123 3.877 11 C 0.125 3.875 12 H 0.051 0.949 13 C -0.155 4.155 14 C 0.159 3.841 15 N -0.602 5.602 16 C -0.216 4.216 17 H 0.079 0.921 18 C -0.007 4.007 19 N -0.922 5.922 20 Si 0.906 3.094 21 H -0.285 1.285 22 H -0.290 1.290 23 H -0.286 1.286 24 N -0.199 5.199 25 N -0.066 5.066 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.203 0.797 34 H 0.411 0.589 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.053 0.947 38 H 0.077 0.923 39 H 0.026 0.974 40 H 0.073 0.927 41 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.281 -6.871 -9.021 22.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.176 4.176 3 C 0.000 4.000 4 N -0.150 5.150 5 C -0.069 4.069 6 C -0.234 4.234 7 C 0.382 3.618 8 O -0.430 6.430 9 N -0.345 5.345 10 C -0.001 4.001 11 C 0.018 3.982 12 H 0.068 0.932 13 C -0.194 4.194 14 C 0.034 3.966 15 N -0.328 5.328 16 C -0.344 4.344 17 H 0.097 0.903 18 C -0.203 4.203 19 N -0.569 5.569 20 Si 0.737 3.263 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.213 1.213 24 N -0.073 5.073 25 N -0.046 5.046 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.116 0.884 32 H 0.122 0.878 33 H 0.220 0.780 34 H 0.247 0.753 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.072 0.928 38 H 0.095 0.905 39 H 0.044 0.956 40 H 0.092 0.908 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -19.334 -7.060 -8.151 22.138 hybrid contribution -0.739 0.721 0.501 1.147 sum -20.072 -6.339 -7.650 22.397 Atomic orbital electron populations 1.21703 0.93921 1.02816 1.02318 1.21833 0.96866 0.94668 1.04272 1.22124 0.72764 0.99983 1.05080 1.50557 1.08705 1.35708 1.20032 1.23346 0.90211 0.97184 0.96131 1.21612 0.94770 1.07939 0.99044 1.16749 0.81928 0.79888 0.83186 1.90767 1.86815 1.39238 1.26180 1.45792 1.04964 1.52300 1.31401 1.21836 0.82905 1.00325 0.95063 1.22514 0.92117 0.95282 0.88327 0.93188 1.23773 0.96293 1.00198 0.99146 1.22196 0.87284 0.99872 0.87285 1.46089 1.02756 1.60978 1.23000 1.18940 0.89936 1.27105 0.98411 0.90315 1.24730 0.95694 1.01291 0.98631 1.69808 1.06896 1.46687 1.33540 0.86285 0.78918 0.79023 0.82112 1.21136 1.21611 1.21256 1.74710 1.12664 1.10016 1.09880 1.81976 0.93432 1.17667 1.11557 0.92079 0.92256 0.91676 0.91040 0.89973 0.88399 0.87794 0.78001 0.75331 0.91885 0.90692 0.92796 0.90475 0.95595 0.90829 0.93727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.57 9.91 37.16 0.37 -0.21 16 2 C -0.14 -0.80 6.14 -26.73 -0.16 -0.96 16 3 C 0.12 0.74 6.54 -4.04 -0.03 0.71 16 4 N -0.36 -3.98 3.69 -61.06 -0.23 -4.21 16 5 C 0.09 1.04 11.27 -16.84 -0.19 0.85 16 6 C -0.09 -1.49 6.99 -83.55 -0.58 -2.08 16 7 C 0.60 10.81 7.82 -12.48 -0.10 10.71 16 8 O -0.55 -10.84 16.86 5.28 0.09 -10.75 16 9 N -0.70 -12.89 5.52 -61.35 -0.34 -13.23 16 10 C 0.12 2.30 5.54 -4.04 -0.02 2.28 16 11 C 0.13 2.49 4.33 -66.86 -0.29 2.20 16 12 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 13 C -0.16 -2.88 7.86 -25.80 -0.20 -3.09 16 14 C 0.16 3.73 7.51 -2.97 -0.02 3.70 16 15 N -0.60 -15.16 3.57 -170.71 -0.61 -15.77 16 16 C -0.22 -6.05 10.51 -15.06 -0.16 -6.21 16 17 H 0.08 2.16 7.80 -52.48 -0.41 1.75 16 18 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 19 N -0.92 -27.71 11.39 55.49 0.63 -27.08 16 20 Si 0.91 22.97 29.55 -169.99 -5.02 17.95 16 21 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 22 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 N -0.20 -3.36 12.04 32.85 0.40 -2.96 16 25 N -0.07 -0.98 13.65 60.35 0.82 -0.15 16 26 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.06 0.18 8.14 -51.93 -0.42 -0.25 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.10 0.34 8.08 -51.93 -0.42 -0.08 16 33 H 0.20 1.69 8.06 -52.48 -0.42 1.27 16 34 H 0.41 7.75 8.16 -40.82 -0.33 7.42 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 37 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 39 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.07 1.91 7.16 -51.93 -0.37 1.54 16 41 H 0.25 7.41 8.31 -40.82 -0.34 7.08 16 LS Contribution 352.76 15.07 5.32 5.32 Total: -1.00 -34.65 352.76 -6.59 -41.24 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -6.16 Total: 2.03 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: -1.49 Total: 7.62 kcal Atomic # 7 Polarization: -64.08 SS G_CDS: 0.68 Total: -63.40 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.09 Total: -10.75 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.02 Total: 17.95 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.65 -6.59 -41.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038854898.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.171 kcal (2) G-P(sol) polarization free energy of solvation -34.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds