Wall clock time and date at job start Tue Mar 31 2020 03:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47171 * 2 1 4 4 N 1.46497 * 109.46678 * 119.99770 * 2 1 3 5 5 C 1.34814 * 126.59691 * 274.99968 * 4 2 1 6 6 C 1.36596 * 106.84324 * 180.02562 * 5 4 2 7 7 C 1.47520 * 125.77199 * 179.97438 * 6 5 4 8 8 O 1.21588 * 120.00029 * 359.97438 * 7 6 5 9 9 N 1.34782 * 120.00018 * 179.97438 * 7 6 5 10 10 C 1.46492 * 120.00055 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47144 * 180.02562 * 10 9 7 12 12 H 1.09003 * 112.77816 * 303.71965 * 11 10 9 13 13 C 1.53503 * 113.46807 * 172.94514 * 11 10 9 14 14 C 1.53498 * 83.34010 * 219.15221 * 13 11 10 15 15 N 1.47060 * 87.98968 * 26.06610 * 14 13 11 16 16 C 1.36938 * 136.05780 * 152.91951 * 15 14 13 17 17 H 1.08004 * 119.99749 * 179.97438 * 16 15 14 18 18 C 1.38812 * 119.99984 * 359.94372 * 16 15 14 19 19 N 1.31618 * 119.99909 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99701 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.46963 * 90.00392 * 20 18 16 22 22 H 1.48497 * 109.46789 * 210.00298 * 20 18 16 23 23 H 1.48503 * 109.47181 * 330.00148 * 20 18 16 24 24 N 1.34401 * 108.45451 * 0.24106 * 6 5 4 25 25 N 1.28757 * 109.52522 * 359.59128 * 24 6 5 26 26 H 1.09002 * 109.47164 * 300.00466 * 1 2 3 27 27 H 1.09003 * 109.46635 * 59.99877 * 1 2 3 28 28 H 1.08995 * 109.47161 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47338 * 240.00036 * 2 1 3 30 30 H 1.09004 * 109.46602 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.46981 * 299.99605 * 3 2 1 32 32 H 1.08999 * 109.46960 * 59.99805 * 3 2 1 33 33 H 1.08000 * 126.57900 * 359.97438 * 5 4 2 34 34 H 0.96996 * 119.99838 * 359.97438 * 9 7 6 35 35 H 1.09002 * 109.47514 * 60.00098 * 10 9 7 36 36 H 1.09003 * 109.47543 * 300.00304 * 10 9 7 37 37 H 1.08999 * 114.20584 * 332.73578 * 13 11 10 38 38 H 1.08993 * 114.21026 * 105.56086 * 13 11 10 39 39 H 1.09006 * 113.46521 * 271.28087 * 14 13 11 40 40 H 1.08996 * 113.46987 * 140.85270 * 14 13 11 41 41 H 0.97003 * 119.99575 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1972 -0.1513 2.4188 6 6 2.6641 -1.1488 3.2268 7 6 3.0015 -1.0136 4.6565 8 8 2.8708 0.0595 5.2132 9 7 3.4545 -2.0796 5.3458 10 6 3.7901 -1.9452 6.7654 11 6 4.2767 -3.2920 7.3042 12 1 3.5531 -4.0931 7.1534 13 6 4.8159 -3.2175 8.7395 14 6 5.8646 -4.2034 8.2063 15 7 5.6366 -3.6411 6.8667 16 6 6.3684 -3.5037 5.7174 17 1 5.9292 -3.0319 4.8508 18 6 7.6747 -3.9704 5.6663 19 7 8.2098 -4.5454 6.7225 20 14 8.6731 -3.7824 4.0987 21 1 9.3997 -2.4877 4.1270 22 1 9.6499 -4.8962 3.9975 23 1 7.7631 -3.8139 2.9255 24 7 2.7697 -2.2728 2.4975 25 7 2.3899 -2.0393 1.2896 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 2.0084 0.8730 2.7043 34 1 3.5584 -2.9357 4.9018 35 1 2.9060 -1.6298 7.3195 36 1 4.5777 -1.2009 6.8838 37 1 5.2184 -2.2429 9.0156 38 1 4.1475 -3.6386 9.4904 39 1 5.5640 -5.2474 8.2958 40 1 6.8682 -4.0190 8.5895 41 1 9.1226 -4.8718 6.6866 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038855941.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:38 Heat of formation + Delta-G solvation = 114.957880 kcal Electronic energy + Delta-G solvation = -23370.480180 eV Core-core repulsion = 19903.750096 eV Total energy + Delta-G solvation = -3466.730084 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.23128 -39.15415 -37.95787 -36.71835 -34.01489 -32.15314 -31.64020 -30.89912 -28.05927 -27.91315 -27.53924 -24.30400 -23.41748 -23.37926 -21.71577 -20.96701 -20.18706 -19.21581 -18.07084 -16.66494 -16.18331 -16.04391 -15.66466 -15.20961 -15.05844 -14.66151 -14.42805 -14.09414 -13.76110 -13.59284 -13.16628 -13.08007 -12.87518 -12.82229 -12.25785 -12.06850 -11.83764 -11.69810 -11.47328 -11.18111 -11.04414 -10.92194 -10.72575 -10.50509 -10.43698 -10.02180 -9.77106 -9.74320 -9.28422 -9.17471 -8.74798 -8.48945 -6.83422 -5.70331 -3.02420 1.12969 1.85599 1.89718 3.43937 3.49003 3.49993 3.52072 3.60382 3.96311 4.23110 4.26225 4.45416 4.50291 4.74236 4.88683 4.91456 5.02108 5.10293 5.12965 5.27202 5.32860 5.46145 5.55184 5.56382 5.61634 5.75829 5.88559 5.98199 6.14839 6.31105 6.36852 6.45494 6.65073 6.77126 6.92625 7.29371 7.44945 7.64529 7.82837 8.04574 8.09416 8.54980 9.10601 9.77289 10.69081 11.46973 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.016855 B = 0.004149 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.835098 B = 6747.780659 C = 7895.936028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.144 3.856 3 C -0.169 4.169 4 N -0.360 5.360 5 C 0.089 3.911 6 C -0.094 4.094 7 C 0.599 3.401 8 O -0.553 6.553 9 N -0.695 5.695 10 C 0.121 3.879 11 C 0.126 3.874 12 H 0.049 0.951 13 C -0.160 4.160 14 C 0.151 3.849 15 N -0.601 5.601 16 C -0.211 4.211 17 H 0.082 0.918 18 C -0.007 4.007 19 N -0.920 5.920 20 Si 0.906 3.094 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.280 1.280 24 N -0.199 5.199 25 N -0.068 5.068 26 H 0.066 0.934 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.113 0.887 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.071 0.929 33 H 0.200 0.800 34 H 0.412 0.588 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.058 0.942 39 H 0.025 0.975 40 H 0.072 0.928 41 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.086 10.625 -10.354 21.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.042 3.958 3 C -0.227 4.227 4 N -0.146 5.146 5 C -0.068 4.068 6 C -0.234 4.234 7 C 0.382 3.618 8 O -0.431 6.431 9 N -0.344 5.344 10 C -0.003 4.003 11 C 0.019 3.981 12 H 0.067 0.933 13 C -0.199 4.199 14 C 0.026 3.974 15 N -0.326 5.326 16 C -0.338 4.338 17 H 0.099 0.901 18 C -0.203 4.203 19 N -0.567 5.567 20 Si 0.737 3.263 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.206 1.206 24 N -0.072 5.072 25 N -0.048 5.048 26 H 0.085 0.915 27 H 0.102 0.898 28 H 0.088 0.912 29 H 0.131 0.869 30 H 0.090 0.910 31 H 0.106 0.894 32 H 0.090 0.910 33 H 0.217 0.783 34 H 0.248 0.752 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.042 0.958 40 H 0.090 0.910 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -15.716 10.009 -10.955 21.615 hybrid contribution 0.532 0.501 -0.800 1.083 sum -15.184 10.510 -11.755 21.890 Atomic orbital electron populations 1.22255 0.92601 1.03829 1.03712 1.21603 0.95574 0.93414 0.85176 1.22271 1.02843 0.93362 1.04272 1.50747 1.44879 1.09899 1.09052 1.23208 0.97992 1.00989 0.84566 1.21604 1.13728 0.90623 0.97426 1.16758 0.77465 0.84376 0.83163 1.90759 1.55820 1.26985 1.69542 1.45793 1.63885 1.12807 1.11919 1.21877 0.99419 0.99809 0.79180 1.22431 0.89864 0.93046 0.92805 0.93335 1.23663 0.99977 1.01534 0.94768 1.22028 0.97669 0.93203 0.84531 1.45698 1.07611 1.67958 1.11374 1.18900 0.93245 1.32478 0.89167 0.90070 1.24742 0.97117 1.00905 0.97572 1.69830 1.14359 1.44454 1.28062 0.86196 0.80123 0.77170 0.82831 1.21674 1.21671 1.20587 1.74696 1.10472 1.23413 0.98644 1.81998 1.18370 0.91712 1.12717 0.91456 0.89797 0.91217 0.86870 0.91006 0.89381 0.91029 0.78277 0.75248 0.92005 0.90832 0.90179 0.92329 0.95763 0.90978 0.93783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.86 9.52 37.16 0.35 -0.51 16 2 C 0.14 0.96 3.96 -67.93 -0.27 0.69 16 3 C -0.17 -0.80 8.85 37.16 0.33 -0.47 16 4 N -0.36 -4.08 3.54 -54.56 -0.19 -4.27 16 5 C 0.09 1.10 10.40 -16.83 -0.18 0.92 16 6 C -0.09 -1.53 6.99 -83.55 -0.58 -2.11 16 7 C 0.60 10.95 7.82 -12.47 -0.10 10.86 16 8 O -0.55 -10.93 16.86 5.29 0.09 -10.84 16 9 N -0.70 -13.05 5.33 -61.36 -0.33 -13.37 16 10 C 0.12 2.28 5.52 -4.05 -0.02 2.25 16 11 C 0.13 2.52 4.10 -72.40 -0.30 2.22 16 12 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 13 C -0.16 -2.97 8.03 -26.21 -0.21 -3.18 16 14 C 0.15 3.54 7.39 -8.51 -0.06 3.48 16 15 N -0.60 -15.10 3.65 -177.00 -0.65 -15.75 16 16 C -0.21 -5.87 10.55 -15.06 -0.16 -6.03 16 17 H 0.08 2.23 7.50 -52.48 -0.39 1.83 16 18 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 19 N -0.92 -27.63 11.51 55.49 0.64 -26.99 16 20 Si 0.91 22.93 29.55 -169.99 -5.02 17.91 16 21 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 22 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 23 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 24 N -0.20 -3.44 12.04 32.85 0.40 -3.04 16 25 N -0.07 -1.04 13.78 60.35 0.83 -0.21 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.07 0.31 7.23 -51.93 -0.38 -0.06 16 33 H 0.20 1.82 7.34 -52.49 -0.39 1.44 16 34 H 0.41 7.94 8.06 -40.82 -0.33 7.61 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 37 H 0.08 1.46 8.12 -51.93 -0.42 1.04 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 1.87 7.12 -51.93 -0.37 1.50 16 41 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 349.47 15.07 5.27 5.27 Total: -1.00 -34.52 349.47 -6.32 -40.84 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -6.06 Total: 2.65 kcal Atomic # 6 Polarization: 9.11 SS G_CDS: -1.29 Total: 7.82 kcal Atomic # 7 Polarization: -64.33 SS G_CDS: 0.70 Total: -63.63 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.09 Total: -10.84 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.52 -6.32 -40.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038855941.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.796 kcal (2) G-P(sol) polarization free energy of solvation -34.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds