Wall clock time and date at job start Tue Mar 31 2020 03:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47171 * 2 1 4 4 N 1.46497 * 109.46678 * 119.99770 * 2 1 3 5 5 C 1.34814 * 126.59691 * 274.99968 * 4 2 1 6 6 C 1.36596 * 106.84324 * 180.02562 * 5 4 2 7 7 C 1.47520 * 125.77199 * 179.97438 * 6 5 4 8 8 O 1.21588 * 120.00029 * 359.97438 * 7 6 5 9 9 N 1.34782 * 120.00018 * 179.97438 * 7 6 5 10 10 C 1.46492 * 120.00055 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47144 * 180.02562 * 10 9 7 12 12 H 1.09003 * 112.77816 * 303.71965 * 11 10 9 13 13 C 1.53503 * 113.46807 * 172.94514 * 11 10 9 14 14 C 1.53498 * 83.34010 * 219.15221 * 13 11 10 15 15 N 1.47060 * 87.98968 * 26.06610 * 14 13 11 16 16 C 1.36938 * 136.05780 * 152.91951 * 15 14 13 17 17 H 1.08004 * 119.99749 * 179.97438 * 16 15 14 18 18 C 1.38812 * 119.99984 * 359.94372 * 16 15 14 19 19 N 1.31618 * 119.99909 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99701 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.46963 * 90.00392 * 20 18 16 22 22 H 1.48497 * 109.46789 * 210.00298 * 20 18 16 23 23 H 1.48503 * 109.47181 * 330.00148 * 20 18 16 24 24 N 1.34401 * 108.45451 * 0.24106 * 6 5 4 25 25 N 1.28757 * 109.52522 * 359.59128 * 24 6 5 26 26 H 1.09002 * 109.47164 * 300.00466 * 1 2 3 27 27 H 1.09003 * 109.46635 * 59.99877 * 1 2 3 28 28 H 1.08995 * 109.47161 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47338 * 240.00036 * 2 1 3 30 30 H 1.09004 * 109.46602 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.46981 * 299.99605 * 3 2 1 32 32 H 1.08999 * 109.46960 * 59.99805 * 3 2 1 33 33 H 1.08000 * 126.57900 * 359.97438 * 5 4 2 34 34 H 0.96996 * 119.99838 * 359.97438 * 9 7 6 35 35 H 1.09002 * 109.47514 * 60.00098 * 10 9 7 36 36 H 1.09003 * 109.47543 * 300.00304 * 10 9 7 37 37 H 1.08999 * 114.20584 * 332.73578 * 13 11 10 38 38 H 1.08993 * 114.21026 * 105.56086 * 13 11 10 39 39 H 1.09006 * 113.46521 * 271.28087 * 14 13 11 40 40 H 1.08996 * 113.46987 * 140.85270 * 14 13 11 41 41 H 0.97003 * 119.99575 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1972 -0.1513 2.4188 6 6 2.6641 -1.1488 3.2268 7 6 3.0015 -1.0136 4.6565 8 8 2.8708 0.0595 5.2132 9 7 3.4545 -2.0796 5.3458 10 6 3.7901 -1.9452 6.7654 11 6 4.2767 -3.2920 7.3042 12 1 3.5531 -4.0931 7.1534 13 6 4.8159 -3.2175 8.7395 14 6 5.8646 -4.2034 8.2063 15 7 5.6366 -3.6411 6.8667 16 6 6.3684 -3.5037 5.7174 17 1 5.9292 -3.0319 4.8508 18 6 7.6747 -3.9704 5.6663 19 7 8.2098 -4.5454 6.7225 20 14 8.6731 -3.7824 4.0987 21 1 9.3997 -2.4877 4.1270 22 1 9.6499 -4.8962 3.9975 23 1 7.7631 -3.8139 2.9255 24 7 2.7697 -2.2728 2.4975 25 7 2.3899 -2.0393 1.2896 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 2.0084 0.8730 2.7043 34 1 3.5584 -2.9357 4.9018 35 1 2.9060 -1.6298 7.3195 36 1 4.5777 -1.2009 6.8838 37 1 5.2184 -2.2429 9.0156 38 1 4.1475 -3.6386 9.4904 39 1 5.5640 -5.2474 8.2958 40 1 6.8682 -4.0190 8.5895 41 1 9.1226 -4.8718 6.6866 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038855941.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:43:37 Heat of formation + Delta-G solvation = 89.582339 kcal Electronic energy + Delta-G solvation = -23371.580546 eV Core-core repulsion = 19903.750096 eV Total energy + Delta-G solvation = -3467.830450 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.29960 -40.65178 -39.61094 -37.43628 -35.52378 -34.23755 -32.52428 -32.03621 -29.95394 -29.15374 -28.28950 -25.38306 -25.29212 -24.61638 -23.24154 -21.87178 -21.45236 -20.92538 -19.32108 -18.39162 -17.30288 -17.15723 -17.10248 -16.94609 -16.08355 -15.88905 -15.70082 -15.46672 -15.37347 -14.84460 -14.53541 -14.22387 -13.65249 -13.56190 -13.33459 -13.30047 -13.18985 -12.97035 -12.71943 -12.59372 -12.55331 -12.35741 -12.30648 -12.06762 -11.85418 -11.62734 -11.37633 -11.34607 -10.93262 -10.82497 -10.43760 -9.96277 -8.87449 -7.87396 -5.18050 0.12834 0.59794 1.06412 1.41456 1.42139 1.50766 2.14107 2.26795 2.46950 3.15830 3.31386 3.35229 3.47792 3.72893 3.78966 3.90418 3.96452 3.99096 4.15601 4.21837 4.37621 4.56585 4.60579 4.63955 4.68009 4.73111 4.75978 4.89147 4.92435 5.08561 5.12027 5.15148 5.19402 5.34837 5.42362 5.50153 5.60959 5.76819 5.99093 6.43711 6.88399 6.96084 7.12815 7.64895 8.64721 9.30149 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.016855 B = 0.004149 C = 0.003545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.835098 B = 6747.780659 C = 7895.936028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.131 3.869 3 C -0.166 4.166 4 N -0.342 5.342 5 C 0.111 3.889 6 C -0.125 4.125 7 C 0.600 3.400 8 O -0.571 6.571 9 N -0.701 5.701 10 C 0.130 3.870 11 C 0.130 3.870 12 H 0.065 0.935 13 C -0.130 4.130 14 C 0.142 3.858 15 N -0.630 5.630 16 C -0.204 4.204 17 H 0.080 0.920 18 C -0.067 4.067 19 N -0.952 5.952 20 Si 0.963 3.037 21 H -0.289 1.289 22 H -0.292 1.292 23 H -0.276 1.276 24 N -0.231 5.231 25 N -0.092 5.092 26 H 0.069 0.931 27 H 0.114 0.886 28 H 0.052 0.948 29 H 0.120 0.880 30 H 0.058 0.942 31 H 0.116 0.884 32 H 0.079 0.921 33 H 0.234 0.766 34 H 0.408 0.592 35 H 0.088 0.912 36 H 0.049 0.951 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.021 0.979 40 H 0.037 0.963 41 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.230 12.506 -11.477 24.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.032 3.968 3 C -0.224 4.224 4 N -0.128 5.128 5 C -0.047 4.047 6 C -0.265 4.265 7 C 0.385 3.615 8 O -0.451 6.451 9 N -0.349 5.349 10 C 0.006 3.994 11 C 0.023 3.977 12 H 0.082 0.918 13 C -0.168 4.168 14 C 0.017 3.983 15 N -0.356 5.356 16 C -0.333 4.333 17 H 0.098 0.902 18 C -0.260 4.260 19 N -0.601 5.601 20 Si 0.793 3.207 21 H -0.216 1.216 22 H -0.219 1.219 23 H -0.202 1.202 24 N -0.104 5.104 25 N -0.071 5.071 26 H 0.088 0.912 27 H 0.132 0.868 28 H 0.072 0.928 29 H 0.138 0.862 30 H 0.078 0.922 31 H 0.135 0.865 32 H 0.098 0.902 33 H 0.250 0.750 34 H 0.243 0.757 35 H 0.107 0.893 36 H 0.068 0.932 37 H 0.102 0.898 38 H 0.120 0.880 39 H 0.039 0.961 40 H 0.056 0.944 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -17.906 11.896 -12.109 24.674 hybrid contribution 1.070 -0.009 -0.526 1.192 sum -16.836 11.887 -12.635 24.174 Atomic orbital electron populations 1.22256 0.90991 1.03273 1.05319 1.22161 0.96787 0.94324 0.83508 1.22311 1.02051 0.91858 1.06131 1.51146 1.42884 1.08721 1.10047 1.23636 0.95589 1.01438 0.84040 1.21527 1.16281 0.91835 0.96872 1.16984 0.76716 0.83798 0.83982 1.90733 1.56740 1.27385 1.70245 1.45834 1.64203 1.12914 1.11996 1.21721 0.99688 0.98257 0.79749 1.22598 0.87889 0.93838 0.93350 0.91756 1.23466 0.98158 1.00261 0.94927 1.22062 0.97490 0.94287 0.84497 1.46020 1.10130 1.68274 1.11135 1.19147 0.93477 1.30643 0.90010 0.90250 1.25442 0.98423 1.01987 1.00164 1.69995 1.14223 1.46289 1.29640 0.85292 0.78676 0.76761 0.79983 1.21638 1.21884 1.20171 1.74661 1.11699 1.24583 0.99479 1.81890 1.19219 0.93954 1.12079 0.91236 0.86790 0.92839 0.86243 0.92242 0.86530 0.90210 0.74971 0.75712 0.89347 0.93214 0.89844 0.88017 0.96135 0.94411 0.94529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 9.52 71.98 0.69 -0.50 16 2 C 0.13 1.41 3.96 44.99 0.18 1.59 16 3 C -0.17 -1.00 8.85 71.98 0.64 -0.37 16 4 N -0.34 -7.18 3.54 -326.53 -1.16 -8.34 16 5 C 0.11 2.53 10.40 83.85 0.87 3.40 16 6 C -0.12 -3.97 6.99 40.82 0.29 -3.69 16 7 C 0.60 21.64 7.82 86.69 0.68 22.32 16 8 O -0.57 -22.01 16.86 -3.99 -0.07 -22.08 16 9 N -0.70 -26.08 5.33 -466.29 -2.49 -28.56 16 10 C 0.13 4.72 5.52 86.38 0.48 5.20 16 11 C 0.13 4.98 4.10 41.79 0.17 5.16 16 12 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 13 C -0.13 -4.52 8.03 30.93 0.25 -4.27 16 14 C 0.14 6.68 7.39 83.18 0.61 7.30 16 15 N -0.63 -31.81 3.65 -713.91 -2.61 -34.42 16 16 C -0.20 -11.56 10.55 84.03 0.89 -10.68 16 17 H 0.08 4.42 7.50 -2.91 -0.02 4.40 16 18 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 19 N -0.95 -58.83 11.51 21.65 0.25 -58.58 16 20 Si 0.96 48.22 29.55 68.60 2.03 50.25 16 21 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 22 H -0.29 -14.58 7.11 99.48 0.71 -13.88 16 23 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 24 N -0.23 -8.02 12.04 -50.00 -0.60 -8.63 16 25 N -0.09 -2.77 13.78 37.02 0.51 -2.26 16 26 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 28 H 0.05 0.59 8.14 -2.39 -0.02 0.58 16 29 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 31 H 0.12 0.10 8.14 -2.39 -0.02 0.08 16 32 H 0.08 0.38 7.23 -2.39 -0.02 0.37 16 33 H 0.23 3.51 7.34 -2.91 -0.02 3.49 16 34 H 0.41 15.83 8.06 -92.71 -0.75 15.08 16 35 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 36 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.08 2.88 8.12 -2.39 -0.02 2.87 16 38 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 39 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 40 H 0.04 2.02 7.12 -2.39 -0.02 2.00 16 41 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -77.19 349.47 2.36 -74.83 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 0.29 Total: 15.83 kcal Atomic # 6 Polarization: 15.75 SS G_CDS: 6.20 Total: 21.95 kcal Atomic # 7 Polarization: -134.69 SS G_CDS: -6.09 Total: -140.78 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.07 Total: -22.08 kcal Atomic # 14 Polarization: 48.22 SS G_CDS: 2.03 Total: 50.25 kcal Total: -77.19 2.36 -74.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038855941.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.410 kcal (2) G-P(sol) polarization free energy of solvation -77.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds