Wall clock time and date at job start Tue Mar 31 2020 03:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.33324 * 126.81501 * 2 1 4 4 N 1.28505 * 109.44025 * 180.28225 * 3 2 1 5 5 N 1.28719 * 110.64045 * 359.72743 * 4 3 2 6 6 H 0.96996 * 126.03685 * 180.02562 * 5 4 3 7 7 C 1.37001 * 126.81634 * 179.82148 * 2 1 3 8 8 C 1.47235 * 127.18816 * 359.97438 * 7 2 1 9 9 O 1.21627 * 120.00003 * 28.26175 * 8 7 2 10 10 N 1.34776 * 120.00097 * 208.25978 * 8 7 2 11 11 C 1.46925 * 120.63133 * 5.81133 * 10 8 7 12 12 C 1.53195 * 108.76258 * 126.35970 * 11 10 8 13 13 C 1.53036 * 109.31192 * 54.65794 * 12 11 10 14 14 H 1.08996 * 109.45921 * 58.62626 * 13 12 11 15 15 N 1.46497 * 109.46079 * 178.59760 * 13 12 11 16 16 C 1.36940 * 120.00254 * 275.03260 * 15 13 12 17 17 H 1.07999 * 119.99824 * 359.97438 * 16 15 13 18 18 C 1.38808 * 120.00091 * 179.97438 * 16 15 13 19 19 N 1.31625 * 120.00092 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00173 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46874 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47387 * 240.00434 * 20 18 16 23 23 H 1.48502 * 109.46891 * 119.99648 * 20 18 16 24 24 C 1.53034 * 109.52788 * 298.61342 * 13 12 11 25 25 C 1.46931 * 120.63026 * 185.79006 * 10 8 7 26 26 H 1.08997 * 109.58190 * 113.84353 * 25 10 8 27 27 C 1.53001 * 109.70133 * 353.48958 * 25 10 8 28 28 H 1.09004 * 109.46898 * 270.17378 * 1 2 3 29 29 H 1.09000 * 109.47142 * 30.17818 * 1 2 3 30 30 H 1.08994 * 109.47273 * 150.17910 * 1 2 3 31 31 H 1.08995 * 109.59097 * 246.15907 * 11 10 8 32 32 H 1.09001 * 109.58238 * 6.44332 * 11 10 8 33 33 H 1.09001 * 109.50963 * 294.69678 * 12 11 10 34 34 H 1.08997 * 109.48301 * 174.60693 * 12 11 10 35 35 H 0.97002 * 120.00147 * 95.02279 * 15 13 12 36 36 H 0.96990 * 119.99632 * 0.02562 * 19 18 16 37 37 H 1.09008 * 109.50147 * 181.32585 * 24 13 12 38 38 H 1.09002 * 109.50028 * 301.41541 * 24 13 12 39 39 H 1.08997 * 109.47177 * 303.67360 * 27 25 10 40 40 H 1.08992 * 109.47286 * 63.67572 * 27 25 10 41 41 H 1.09006 * 109.46474 * 183.67808 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3060 1.0674 0.0000 4 7 3.5324 0.6836 -0.0060 5 7 3.6057 -0.6015 -0.0043 6 1 4.4213 -1.1265 -0.0075 7 6 2.3280 -1.0968 0.0034 8 6 1.9223 -2.5121 0.0084 9 8 0.8627 -2.8427 -0.4889 10 7 2.7251 -3.4413 0.5638 11 6 3.9455 -3.0450 1.2795 12 6 3.9202 -3.6676 2.6790 13 6 3.7272 -5.1808 2.5563 14 1 4.5373 -5.6031 1.9618 15 7 3.7361 -5.7837 3.8914 16 6 4.9247 -6.1150 4.4853 17 1 5.8556 -5.9321 3.9692 18 6 4.9331 -6.6858 5.7506 19 7 3.7986 -6.9083 6.3797 20 14 6.5545 -7.1384 6.5604 21 1 7.6760 -6.7887 5.6521 22 1 6.5787 -8.5968 6.8388 23 1 6.6977 -6.3886 7.8343 24 6 2.3887 -5.4721 1.8742 25 6 2.3962 -4.8700 0.4656 26 1 3.1445 -5.3761 -0.1442 27 6 1.0155 -5.0388 -0.1718 28 1 -0.3633 0.0031 1.0277 29 1 -0.3633 0.8884 -0.5166 30 1 -0.3633 -0.8915 -0.5110 31 1 4.8202 -3.4022 0.7361 32 1 3.9846 -1.9587 1.3612 33 1 3.0971 -3.2411 3.2524 34 1 4.8627 -3.4608 3.1860 35 1 2.9000 -5.9483 4.3549 36 1 2.9567 -6.6737 5.9591 37 1 2.2409 -6.5501 1.8082 38 1 1.5800 -5.0286 2.4552 39 1 0.2778 -4.4830 0.4069 40 1 1.0378 -4.6585 -1.1930 41 1 0.7474 -6.0953 -0.1832 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044698828.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:27 Heat of formation + Delta-G solvation = 91.100731 kcal Electronic energy + Delta-G solvation = -24269.734954 eV Core-core repulsion = 20801.970347 eV Total energy + Delta-G solvation = -3467.764607 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -43.67548 -40.54651 -37.74927 -35.13151 -34.27967 -33.45714 -32.25860 -31.87706 -29.38969 -28.04245 -27.17349 -24.84291 -23.91373 -23.44352 -22.86993 -21.38476 -20.63998 -19.91564 -18.03404 -17.39797 -17.07409 -16.67397 -16.18988 -15.38840 -14.89737 -14.69103 -14.26312 -14.07711 -13.75867 -13.66195 -13.43892 -13.32340 -12.95725 -12.84527 -12.38597 -12.34165 -12.10352 -11.90509 -11.67038 -11.30265 -11.08699 -10.95721 -10.77499 -10.67830 -10.53631 -10.26973 -10.12585 -9.52038 -9.45720 -9.29027 -9.03213 -8.76795 -7.17368 -6.20816 -3.22524 0.69158 2.00932 2.16179 2.50906 2.86432 3.44504 3.50885 3.59719 3.92282 4.18816 4.46403 4.54804 4.61121 4.81783 4.90664 4.96960 4.99597 5.16485 5.24095 5.43372 5.46607 5.47884 5.51465 5.64416 5.66731 5.77884 5.87202 5.95166 6.02343 6.06852 6.16993 6.20382 6.25289 6.32392 6.49622 6.61860 6.77603 7.08299 7.69217 7.78079 8.03445 8.64782 9.10065 9.96580 10.10847 11.27322 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.021980 B = 0.003926 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.583341 B = 7130.461115 C = 7831.584115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.054 3.946 3 N -0.269 5.269 4 N -0.051 5.051 5 N -0.377 5.377 6 H 0.453 0.547 7 C -0.065 4.065 8 C 0.594 3.406 9 O -0.509 6.509 10 N -0.596 5.596 11 C 0.091 3.909 12 C -0.148 4.148 13 C 0.185 3.815 14 H 0.050 0.950 15 N -0.734 5.734 16 C -0.337 4.337 17 H 0.066 0.934 18 C -0.042 4.042 19 N -0.942 5.942 20 Si 1.084 2.916 21 H -0.295 1.295 22 H -0.292 1.292 23 H -0.293 1.293 24 C -0.138 4.138 25 C 0.150 3.850 26 H 0.077 0.923 27 C -0.138 4.138 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.367 0.633 36 H 0.256 0.744 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.909 9.262 -15.112 17.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.086 4.086 3 N -0.136 5.136 4 N -0.032 5.032 5 N -0.107 5.107 6 H 0.303 0.697 7 C -0.198 4.198 8 C 0.379 3.621 9 O -0.384 6.384 10 N -0.329 5.329 11 C -0.032 4.032 12 C -0.190 4.190 13 C 0.074 3.926 14 H 0.068 0.932 15 N -0.376 5.376 16 C -0.467 4.467 17 H 0.084 0.916 18 C -0.240 4.240 19 N -0.586 5.586 20 Si 0.915 3.085 21 H -0.221 1.221 22 H -0.219 1.219 23 H -0.220 1.220 24 C -0.177 4.177 25 C 0.047 3.953 26 H 0.095 0.905 27 C -0.195 4.195 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.114 0.886 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.098 0.902 35 H 0.201 0.799 36 H 0.068 0.932 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.868 9.781 -14.106 17.267 hybrid contribution -0.584 -0.537 -1.029 1.300 sum -2.453 9.244 -15.136 17.904 Atomic orbital electron populations 1.20335 0.84953 1.04721 1.03728 1.22295 0.98554 0.86939 1.00808 1.74925 0.95209 1.26033 1.17419 1.78176 1.16000 0.92496 1.16572 1.46045 1.09000 1.06967 1.48668 0.69699 1.22225 0.84938 0.96897 1.15787 1.16864 0.84246 0.81984 0.78978 1.90887 1.22235 1.78693 1.46601 1.48175 1.24350 1.07047 1.53346 1.22188 0.86463 0.99224 0.95352 1.22662 1.03241 0.99984 0.93082 1.20081 0.94444 0.90172 0.87866 0.93173 1.42434 1.06102 1.73901 1.15115 1.20074 0.85945 1.39018 1.01706 0.91644 1.25779 1.04703 0.99209 0.94308 1.70822 0.97387 1.50408 1.40031 0.83167 0.73386 0.76490 0.75436 1.22109 1.21918 1.21962 1.22341 0.99570 1.01332 0.94417 1.21403 0.98407 0.78124 0.97336 0.90520 1.22234 0.95040 1.00284 1.01956 0.90121 0.90093 0.88629 0.90550 0.91235 0.92025 0.90205 0.79934 0.93243 0.90287 0.91632 0.90822 0.91205 0.93270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 10.21 36.01 0.37 -0.42 16 2 C 0.05 0.67 7.29 -82.39 -0.60 0.07 16 3 N -0.27 -3.66 12.35 33.51 0.41 -3.24 16 4 N -0.05 -0.64 13.35 60.35 0.81 0.16 16 5 N -0.38 -3.89 5.70 33.31 0.19 -3.70 16 6 H 0.45 3.28 6.89 -190.33 -1.31 1.97 16 7 C -0.06 -0.77 6.34 -82.33 -0.52 -1.29 16 8 C 0.59 7.48 7.51 -12.61 -0.09 7.38 16 9 O -0.51 -7.11 10.76 5.25 0.06 -7.06 16 10 N -0.60 -7.12 2.97 -166.55 -0.49 -7.61 16 11 C 0.09 1.01 5.45 -3.71 -0.02 0.99 16 12 C -0.15 -2.28 5.66 -26.61 -0.15 -2.43 16 13 C 0.18 3.26 2.73 -67.90 -0.19 3.08 16 14 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 15 N -0.73 -17.11 5.12 -53.39 -0.27 -17.38 16 16 C -0.34 -8.92 9.93 -15.06 -0.15 -9.07 16 17 H 0.07 1.70 7.83 -52.49 -0.41 1.29 16 18 C -0.04 -1.17 5.50 -17.43 -0.10 -1.27 16 19 N -0.94 -28.27 13.70 55.49 0.76 -27.51 16 20 Si 1.08 25.08 29.92 -169.99 -5.09 19.99 16 21 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 C -0.14 -2.05 4.84 -26.62 -0.13 -2.18 16 25 C 0.15 1.85 3.49 -67.60 -0.24 1.62 16 26 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 27 C -0.14 -1.68 7.60 37.16 0.28 -1.39 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.10 0.98 6.56 -51.93 -0.34 0.64 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.68 4.42 -51.93 -0.23 0.45 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.37 9.02 6.63 -40.82 -0.27 8.74 16 36 H 0.26 7.57 6.77 -40.82 -0.28 7.30 16 37 H 0.08 1.20 8.14 -51.92 -0.42 0.78 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.07 1.00 6.76 -51.93 -0.35 0.65 16 40 H 0.07 0.87 6.75 -51.93 -0.35 0.52 16 41 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 325.69 15.07 4.91 4.91 Total: -1.00 -31.81 325.69 -6.81 -38.63 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -6.56 Total: 7.72 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: -1.53 Total: -4.91 kcal Atomic # 7 Polarization: -60.69 SS G_CDS: 1.40 Total: -59.28 kcal Atomic # 8 Polarization: -7.11 SS G_CDS: 0.06 Total: -7.06 kcal Atomic # 14 Polarization: 25.08 SS G_CDS: -5.09 Total: 19.99 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.81 -6.81 -38.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044698828.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.728 kcal (2) G-P(sol) polarization free energy of solvation -31.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds