Wall clock time and date at job start Tue Mar 31 2020 03:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.33324 * 126.81501 * 2 1 4 4 N 1.28505 * 109.44025 * 180.28225 * 3 2 1 5 5 N 1.28719 * 110.64045 * 359.72743 * 4 3 2 6 6 H 0.96996 * 126.03685 * 180.02562 * 5 4 3 7 7 C 1.37001 * 126.81634 * 179.82148 * 2 1 3 8 8 C 1.47235 * 127.18816 * 359.97438 * 7 2 1 9 9 O 1.21627 * 120.00003 * 28.26175 * 8 7 2 10 10 N 1.34776 * 120.00097 * 208.25978 * 8 7 2 11 11 C 1.46925 * 120.63133 * 5.81133 * 10 8 7 12 12 C 1.53195 * 108.76258 * 126.35970 * 11 10 8 13 13 C 1.53036 * 109.31192 * 54.65794 * 12 11 10 14 14 H 1.08996 * 109.45921 * 58.62626 * 13 12 11 15 15 N 1.46497 * 109.46079 * 178.59760 * 13 12 11 16 16 C 1.36940 * 120.00254 * 275.03260 * 15 13 12 17 17 H 1.07999 * 119.99824 * 359.97438 * 16 15 13 18 18 C 1.38808 * 120.00091 * 179.97438 * 16 15 13 19 19 N 1.31625 * 120.00092 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00173 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46874 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47387 * 240.00434 * 20 18 16 23 23 H 1.48502 * 109.46891 * 119.99648 * 20 18 16 24 24 C 1.53034 * 109.52788 * 298.61342 * 13 12 11 25 25 C 1.46931 * 120.63026 * 185.79006 * 10 8 7 26 26 H 1.08997 * 109.58190 * 113.84353 * 25 10 8 27 27 C 1.53001 * 109.70133 * 353.48958 * 25 10 8 28 28 H 1.09004 * 109.46898 * 270.17378 * 1 2 3 29 29 H 1.09000 * 109.47142 * 30.17818 * 1 2 3 30 30 H 1.08994 * 109.47273 * 150.17910 * 1 2 3 31 31 H 1.08995 * 109.59097 * 246.15907 * 11 10 8 32 32 H 1.09001 * 109.58238 * 6.44332 * 11 10 8 33 33 H 1.09001 * 109.50963 * 294.69678 * 12 11 10 34 34 H 1.08997 * 109.48301 * 174.60693 * 12 11 10 35 35 H 0.97002 * 120.00147 * 95.02279 * 15 13 12 36 36 H 0.96990 * 119.99632 * 0.02562 * 19 18 16 37 37 H 1.09008 * 109.50147 * 181.32585 * 24 13 12 38 38 H 1.09002 * 109.50028 * 301.41541 * 24 13 12 39 39 H 1.08997 * 109.47177 * 303.67360 * 27 25 10 40 40 H 1.08992 * 109.47286 * 63.67572 * 27 25 10 41 41 H 1.09006 * 109.46474 * 183.67808 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3060 1.0674 0.0000 4 7 3.5324 0.6836 -0.0060 5 7 3.6057 -0.6015 -0.0043 6 1 4.4213 -1.1265 -0.0075 7 6 2.3280 -1.0968 0.0034 8 6 1.9223 -2.5121 0.0084 9 8 0.8627 -2.8427 -0.4889 10 7 2.7251 -3.4413 0.5638 11 6 3.9455 -3.0450 1.2795 12 6 3.9202 -3.6676 2.6790 13 6 3.7272 -5.1808 2.5563 14 1 4.5373 -5.6031 1.9618 15 7 3.7361 -5.7837 3.8914 16 6 4.9247 -6.1150 4.4853 17 1 5.8556 -5.9321 3.9692 18 6 4.9331 -6.6858 5.7506 19 7 3.7986 -6.9083 6.3797 20 14 6.5545 -7.1384 6.5604 21 1 7.6760 -6.7887 5.6521 22 1 6.5787 -8.5968 6.8388 23 1 6.6977 -6.3886 7.8343 24 6 2.3887 -5.4721 1.8742 25 6 2.3962 -4.8700 0.4656 26 1 3.1445 -5.3761 -0.1442 27 6 1.0155 -5.0388 -0.1718 28 1 -0.3633 0.0031 1.0277 29 1 -0.3633 0.8884 -0.5166 30 1 -0.3633 -0.8915 -0.5110 31 1 4.8202 -3.4022 0.7361 32 1 3.9846 -1.9587 1.3612 33 1 3.0971 -3.2411 3.2524 34 1 4.8627 -3.4608 3.1860 35 1 2.9000 -5.9483 4.3549 36 1 2.9567 -6.6737 5.9591 37 1 2.2409 -6.5501 1.8082 38 1 1.5800 -5.0286 2.4552 39 1 0.2778 -4.4830 0.4069 40 1 1.0378 -4.6585 -1.1930 41 1 0.7474 -6.0953 -0.1832 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044698828.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:26 Heat of formation + Delta-G solvation = 68.825569 kcal Electronic energy + Delta-G solvation = -24270.700878 eV Core-core repulsion = 20801.970347 eV Total energy + Delta-G solvation = -3468.730531 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.60493 -41.59560 -38.96981 -36.63699 -35.35868 -34.42952 -33.88134 -32.86389 -30.95205 -29.04287 -28.32620 -26.05171 -25.47913 -24.56312 -24.08520 -22.43116 -21.84971 -21.02095 -19.43541 -18.91697 -18.04258 -17.63954 -17.24977 -16.83060 -16.24400 -15.89536 -15.69929 -15.39911 -15.07884 -14.88931 -14.69896 -14.18870 -14.02249 -13.74149 -13.50387 -13.41145 -13.26426 -13.02464 -12.88906 -12.69656 -12.45444 -12.22727 -12.13971 -12.09169 -11.86226 -11.72319 -11.60173 -11.21648 -10.92654 -10.48029 -10.41406 -9.82140 -9.14067 -8.37902 -5.33129 -0.24266 1.05700 1.28853 1.51871 1.59028 1.69773 1.80436 1.92455 2.70832 3.00529 3.27232 3.39538 3.54015 3.55647 3.67744 3.79887 3.91482 3.93780 4.07385 4.19117 4.35721 4.45616 4.52147 4.54795 4.56994 4.71260 4.74515 4.85972 4.87831 4.91725 5.07904 5.14279 5.23815 5.31063 5.37538 5.52162 5.57413 5.61550 6.08632 6.49701 6.78797 7.08843 7.09316 7.98512 8.11185 9.13907 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.021980 B = 0.003926 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.583341 B = 7130.461115 C = 7831.584115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.046 3.954 3 N -0.292 5.292 4 N -0.059 5.059 5 N -0.357 5.357 6 H 0.466 0.534 7 C -0.070 4.070 8 C 0.598 3.402 9 O -0.523 6.523 10 N -0.595 5.595 11 C 0.100 3.900 12 C -0.139 4.139 13 C 0.178 3.822 14 H 0.054 0.946 15 N -0.750 5.750 16 C -0.325 4.325 17 H 0.072 0.928 18 C -0.106 4.106 19 N -0.980 5.980 20 Si 1.129 2.871 21 H -0.267 1.267 22 H -0.294 1.294 23 H -0.296 1.296 24 C -0.127 4.127 25 C 0.156 3.844 26 H 0.099 0.901 27 C -0.129 4.129 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.110 0.890 32 H 0.085 0.915 33 H 0.041 0.959 34 H 0.068 0.932 35 H 0.357 0.643 36 H 0.244 0.756 37 H 0.075 0.925 38 H 0.050 0.950 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.666 9.761 -16.832 19.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.094 4.094 3 N -0.158 5.158 4 N -0.040 5.040 5 N -0.090 5.090 6 H 0.320 0.680 7 C -0.204 4.204 8 C 0.383 3.617 9 O -0.399 6.399 10 N -0.328 5.328 11 C -0.023 4.023 12 C -0.180 4.180 13 C 0.070 3.930 14 H 0.072 0.928 15 N -0.391 5.391 16 C -0.456 4.456 17 H 0.090 0.910 18 C -0.297 4.297 19 N -0.628 5.628 20 Si 0.955 3.045 21 H -0.192 1.192 22 H -0.221 1.221 23 H -0.223 1.223 24 C -0.166 4.166 25 C 0.053 3.947 26 H 0.117 0.883 27 C -0.186 4.186 28 H 0.106 0.894 29 H 0.113 0.887 30 H 0.110 0.890 31 H 0.128 0.872 32 H 0.103 0.897 33 H 0.060 0.940 34 H 0.086 0.914 35 H 0.188 0.812 36 H 0.054 0.946 37 H 0.093 0.907 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.599 10.313 -15.890 18.953 hybrid contribution -1.004 -0.667 -0.564 1.331 sum -1.603 9.646 -16.455 19.141 Atomic orbital electron populations 1.20394 0.83696 1.05185 1.04302 1.22703 0.99579 0.86829 1.00290 1.74922 0.95641 1.26774 1.18511 1.78125 1.15838 0.93236 1.16793 1.46007 1.09188 1.06469 1.47334 0.68047 1.22126 0.85459 0.96463 1.16365 1.16871 0.83928 0.82124 0.78753 1.90892 1.22775 1.78947 1.47253 1.48159 1.24523 1.06824 1.53247 1.22184 0.87307 0.99938 0.92855 1.22416 1.01740 0.98194 0.95655 1.20360 0.96052 0.91163 0.85431 0.92780 1.42693 1.04768 1.74587 1.17043 1.20424 0.87195 1.36584 1.01397 0.90984 1.27102 1.06629 1.00168 0.95776 1.70938 0.97701 1.53265 1.40897 0.82592 0.71033 0.75934 0.74988 1.19201 1.22120 1.22284 1.22200 0.97388 1.01270 0.95711 1.21377 0.99366 0.78341 0.95580 0.88320 1.22119 0.94311 1.00742 1.01469 0.89440 0.88730 0.89015 0.87194 0.89701 0.94040 0.91382 0.81189 0.94569 0.90673 0.93087 0.92530 0.91130 0.92175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.44 10.21 71.24 0.73 -0.71 16 2 C 0.05 1.08 7.29 42.04 0.31 1.38 16 3 N -0.29 -7.52 12.35 -47.88 -0.59 -8.12 16 4 N -0.06 -1.37 13.35 37.02 0.49 -0.87 16 5 N -0.36 -6.48 5.70 -48.52 -0.28 -6.76 16 6 H 0.47 5.22 6.89 -219.90 -1.52 3.71 16 7 C -0.07 -1.52 6.34 40.41 0.26 -1.26 16 8 C 0.60 13.77 7.51 86.61 0.65 14.42 16 9 O -0.52 -13.75 10.76 -4.12 -0.04 -13.79 16 10 N -0.59 -12.70 2.97 -799.08 -2.37 -15.08 16 11 C 0.10 1.93 5.45 86.36 0.47 2.40 16 12 C -0.14 -4.09 5.66 30.67 0.17 -3.92 16 13 C 0.18 6.10 2.73 45.02 0.12 6.22 16 14 H 0.05 1.83 8.08 -2.39 -0.02 1.81 16 15 N -0.75 -35.15 5.12 -322.84 -1.65 -36.80 16 16 C -0.32 -17.08 9.93 84.03 0.83 -16.25 16 17 H 0.07 3.64 7.83 -2.91 -0.02 3.61 16 18 C -0.11 -5.91 5.50 84.86 0.47 -5.44 16 19 N -0.98 -60.11 13.70 21.65 0.30 -59.82 16 20 Si 1.13 50.26 29.92 68.60 2.05 52.31 16 21 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 22 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 23 H -0.30 -13.19 7.11 99.48 0.71 -12.49 16 24 C -0.13 -3.65 4.84 30.67 0.15 -3.51 16 25 C 0.16 3.49 3.49 44.97 0.16 3.65 16 26 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 27 C -0.13 -2.90 7.60 71.98 0.55 -2.36 16 28 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 29 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.09 1.79 6.56 -2.39 -0.02 1.77 16 31 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.09 1.41 4.42 -2.39 -0.01 1.40 16 33 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.36 18.02 6.63 -92.71 -0.61 17.41 16 36 H 0.24 14.94 6.77 -92.72 -0.63 14.31 16 37 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 38 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.06 1.48 6.76 -2.39 -0.02 1.46 16 40 H 0.07 1.61 6.75 -2.39 -0.02 1.59 16 41 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 Total: -1.00 -69.01 325.69 1.85 -67.16 By element: Atomic # 1 Polarization: 28.04 SS G_CDS: -0.91 Total: 27.12 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: 4.86 Total: -5.37 kcal Atomic # 7 Polarization: -123.34 SS G_CDS: -4.10 Total: -127.44 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -0.04 Total: -13.79 kcal Atomic # 14 Polarization: 50.26 SS G_CDS: 2.05 Total: 52.31 kcal Total: -69.01 1.85 -67.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044698828.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.989 kcal (2) G-P(sol) polarization free energy of solvation -69.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds