Wall clock time and date at job start Tue Mar 31 2020 03:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.33318 * 126.81784 * 2 1 4 4 N 1.28514 * 109.43852 * 180.28079 * 3 2 1 5 5 N 1.28705 * 110.64034 * 359.73101 * 4 3 2 6 6 H 0.97007 * 126.03513 * 180.02562 * 5 4 3 7 7 C 1.37010 * 126.80943 * 179.82807 * 2 1 3 8 8 C 1.47228 * 127.19452 * 359.97438 * 7 2 1 9 9 O 1.21626 * 119.99526 * 35.72916 * 8 7 2 10 10 N 1.34772 * 120.00755 * 215.73505 * 8 7 2 11 11 C 1.46928 * 120.62648 * 6.25130 * 10 8 7 12 12 C 1.53193 * 108.77411 * 233.59006 * 11 10 8 13 13 C 1.53037 * 109.31244 * 305.36158 * 12 11 10 14 14 H 1.09004 * 109.44664 * 181.37765 * 13 12 11 15 15 N 1.46501 * 109.46282 * 301.34586 * 13 12 11 16 16 C 1.36936 * 120.00068 * 275.06738 * 15 13 12 17 17 H 1.08002 * 120.00099 * 359.72531 * 16 15 13 18 18 C 1.38809 * 119.99961 * 179.97438 * 16 15 13 19 19 N 1.31618 * 119.99743 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99854 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47228 * 60.00187 * 20 18 16 22 22 H 1.48507 * 109.46959 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47221 * 299.99641 * 20 18 16 24 24 C 1.53043 * 109.53665 * 61.36849 * 13 12 11 25 25 C 1.46922 * 120.63698 * 186.23317 * 10 8 7 26 26 H 1.09002 * 109.58606 * 246.20013 * 25 10 8 27 27 C 1.53000 * 109.58451 * 6.61853 * 25 10 8 28 28 H 1.09002 * 109.46633 * 270.17583 * 1 2 3 29 29 H 1.09001 * 109.47256 * 30.17023 * 1 2 3 30 30 H 1.09000 * 109.47460 * 150.17870 * 1 2 3 31 31 H 1.09002 * 109.58928 * 353.37038 * 11 10 8 32 32 H 1.08996 * 109.59381 * 113.80181 * 11 10 8 33 33 H 1.09005 * 109.49801 * 185.40998 * 12 11 10 34 34 H 1.09003 * 109.50105 * 65.31730 * 12 11 10 35 35 H 0.97003 * 119.99566 * 95.06797 * 15 13 12 36 36 H 0.97008 * 119.99619 * 179.97438 * 19 18 16 37 37 H 1.09003 * 109.50036 * 58.58541 * 24 13 12 38 38 H 1.09002 * 109.49794 * 178.68106 * 24 13 12 39 39 H 1.08997 * 109.47054 * 172.11482 * 27 25 10 40 40 H 1.09001 * 109.47391 * 292.12298 * 27 25 10 41 41 H 1.09007 * 109.47233 * 52.12183 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3059 1.0673 0.0000 4 7 3.5324 0.6834 -0.0059 5 7 3.6056 -0.6015 -0.0043 6 1 4.4213 -1.1267 -0.0075 7 6 2.3279 -1.0969 0.0033 8 6 1.9222 -2.5122 0.0081 9 8 0.9324 -2.8631 -0.6056 10 7 2.6473 -3.4190 0.6924 11 6 3.7633 -2.9932 1.5480 12 6 5.0201 -3.7693 1.1416 13 6 4.7265 -5.2704 1.1922 14 1 5.6264 -5.8253 0.9271 15 7 4.3061 -5.6401 2.5461 16 6 5.2454 -5.9236 3.5013 17 1 6.2962 -5.8788 3.2554 18 6 4.8471 -6.2734 4.7841 19 7 3.5666 -6.3322 5.0825 20 14 6.1286 -6.6593 6.0873 21 1 6.9985 -5.4735 6.2926 22 1 5.4497 -7.0014 7.3631 23 1 6.9561 -7.8093 5.6425 24 6 3.6095 -5.6071 0.2017 25 6 2.3368 -4.8518 0.5974 26 1 1.9823 -5.2137 1.5625 27 6 1.2578 -5.0734 -0.4644 28 1 -0.3633 0.0032 1.0277 29 1 -0.3634 0.8884 -0.5165 30 1 -0.3634 -0.8916 -0.5110 31 1 3.9360 -1.9248 1.4187 32 1 3.5254 -3.2034 2.5907 33 1 5.8316 -3.5339 1.8302 34 1 5.3091 -3.4890 0.1286 35 1 3.3623 -5.6842 2.7657 36 1 3.2882 -6.5770 5.9790 37 1 3.9117 -5.3095 -0.8025 38 1 3.4170 -6.6798 0.2213 39 1 1.1285 -6.1424 -0.6334 40 1 0.3167 -4.6433 -0.1215 41 1 1.5594 -4.5924 -1.3950 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044698830.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:34 Heat of formation + Delta-G solvation = 90.710305 kcal Electronic energy + Delta-G solvation = -24700.576511 eV Core-core repulsion = 21232.794974 eV Total energy + Delta-G solvation = -3467.781537 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -43.51964 -40.37082 -37.70257 -34.68874 -33.97635 -33.28498 -32.10050 -31.71258 -29.33903 -28.02518 -27.14935 -24.75294 -23.88914 -23.49164 -22.99951 -21.41403 -20.46543 -19.06446 -17.79265 -17.35000 -16.95907 -16.43064 -15.88263 -15.35587 -14.66320 -14.37123 -14.13762 -13.99378 -13.82335 -13.50111 -13.26552 -13.14476 -12.79075 -12.69130 -12.23400 -12.15713 -11.98235 -11.72207 -11.39157 -11.17246 -11.03406 -10.94139 -10.88222 -10.73713 -10.45742 -10.40249 -10.13356 -9.77280 -9.35367 -9.25885 -9.07220 -8.44999 -7.13463 -5.90478 -3.20769 0.87984 2.14333 2.31563 2.73355 3.05992 3.34617 3.39974 3.41179 4.10413 4.36356 4.47097 4.64333 4.86361 4.99000 5.10798 5.16286 5.24554 5.40439 5.48159 5.52626 5.54540 5.58289 5.69136 5.75865 5.78924 5.89378 5.97525 6.12267 6.12671 6.17421 6.28218 6.34551 6.48501 6.53181 6.57595 6.64190 6.81236 7.36157 7.56689 8.00011 8.17858 8.27446 9.39252 9.93570 10.28205 11.31564 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.019632 B = 0.004596 C = 0.004217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.885107 B = 6090.582022 C = 6638.812897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.047 3.953 3 N -0.270 5.270 4 N -0.055 5.055 5 N -0.374 5.374 6 H 0.453 0.547 7 C -0.058 4.058 8 C 0.591 3.409 9 O -0.515 6.515 10 N -0.589 5.589 11 C 0.103 3.897 12 C -0.154 4.154 13 C 0.174 3.826 14 H 0.055 0.945 15 N -0.721 5.721 16 C -0.246 4.246 17 H 0.070 0.930 18 C -0.008 4.008 19 N -0.931 5.931 20 Si 0.906 3.094 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.134 4.134 25 C 0.147 3.853 26 H 0.086 0.914 27 C -0.138 4.138 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.060 0.940 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.048 0.952 35 H 0.384 0.616 36 H 0.257 0.743 37 H 0.062 0.938 38 H 0.079 0.921 39 H 0.048 0.952 40 H 0.075 0.925 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.455 7.430 -11.360 13.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.092 4.092 3 N -0.137 5.137 4 N -0.036 5.036 5 N -0.103 5.103 6 H 0.303 0.697 7 C -0.193 4.193 8 C 0.375 3.625 9 O -0.390 6.390 10 N -0.322 5.322 11 C -0.020 4.020 12 C -0.196 4.196 13 C 0.064 3.936 14 H 0.073 0.927 15 N -0.363 5.363 16 C -0.377 4.377 17 H 0.088 0.912 18 C -0.205 4.205 19 N -0.578 5.578 20 Si 0.737 3.263 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.212 1.212 24 C -0.173 4.173 25 C 0.045 3.955 26 H 0.104 0.896 27 C -0.195 4.195 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.112 0.888 31 H 0.078 0.922 32 H 0.114 0.886 33 H 0.098 0.902 34 H 0.066 0.934 35 H 0.219 0.781 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.067 0.933 40 H 0.094 0.906 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.157 8.532 -11.564 14.532 hybrid contribution 0.740 -1.446 1.074 1.947 sum -1.417 7.086 -10.490 12.739 Atomic orbital electron populations 1.20296 0.85095 1.04584 1.03611 1.22248 0.98470 0.86990 1.01526 1.74892 0.95242 1.26065 1.17481 1.78155 1.15952 0.92519 1.16984 1.45932 1.09005 1.06854 1.48543 0.69717 1.22261 0.84940 0.97015 1.15038 1.16864 0.83680 0.82013 0.79934 1.90868 1.25734 1.77676 1.44711 1.48164 1.32058 1.07135 1.44799 1.21995 0.86455 0.96959 0.96582 1.22625 0.96708 1.00462 0.99765 1.20167 0.95405 0.91483 0.86572 0.92731 1.42500 1.06650 1.81889 1.05308 1.19167 0.88948 1.39391 0.90204 0.91195 1.24730 0.95950 1.02163 0.97629 1.69636 1.13327 1.54400 1.20479 0.86298 0.80523 0.78186 0.81316 1.21273 1.21672 1.21228 1.22275 0.95392 1.00678 0.98976 1.21360 0.95736 0.77694 1.00717 0.89577 1.22208 0.98964 0.99926 0.98446 0.90193 0.90154 0.88841 0.92238 0.88593 0.90182 0.93375 0.78090 0.93303 0.91976 0.90221 0.93334 0.90587 0.91948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.84 10.26 36.01 0.37 -0.47 16 2 C 0.05 0.64 7.29 -82.39 -0.60 0.04 16 3 N -0.27 -3.95 12.35 33.51 0.41 -3.53 16 4 N -0.06 -0.76 13.35 60.35 0.81 0.05 16 5 N -0.37 -4.46 5.67 33.31 0.19 -4.27 16 6 H 0.45 4.23 7.42 -190.33 -1.41 2.82 16 7 C -0.06 -0.78 6.22 -82.33 -0.51 -1.29 16 8 C 0.59 8.45 7.32 -12.61 -0.09 8.36 16 9 O -0.51 -8.02 11.20 5.25 0.06 -7.96 16 10 N -0.59 -8.37 2.97 -166.56 -0.50 -8.87 16 11 C 0.10 1.46 5.72 -3.71 -0.02 1.44 16 12 C -0.15 -2.18 5.78 -26.61 -0.15 -2.33 16 13 C 0.17 2.93 3.10 -67.89 -0.21 2.72 16 14 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 15 N -0.72 -15.72 4.31 -53.38 -0.23 -15.95 16 16 C -0.25 -6.17 9.93 -15.06 -0.15 -6.32 16 17 H 0.07 1.71 7.83 -52.49 -0.41 1.29 16 18 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 19 N -0.93 -26.33 13.06 55.49 0.72 -25.61 16 20 Si 0.91 21.16 29.55 -169.99 -5.02 16.14 16 21 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 24 C -0.13 -1.94 5.07 -26.61 -0.13 -2.08 16 25 C 0.15 2.18 3.19 -67.60 -0.22 1.97 16 26 H 0.09 1.48 6.64 -51.93 -0.34 1.13 16 27 C -0.14 -1.91 7.61 37.16 0.28 -1.63 16 28 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.09 1.05 6.72 -51.93 -0.35 0.70 16 31 H 0.06 0.73 4.15 -51.93 -0.22 0.51 16 32 H 0.10 1.68 7.74 -51.93 -0.40 1.28 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.38 9.02 6.06 -40.82 -0.25 8.77 16 36 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.08 1.13 6.68 -51.93 -0.35 0.78 16 41 H 0.06 0.88 6.82 -51.92 -0.35 0.53 16 LS Contribution 324.21 15.07 4.89 4.89 Total: -1.00 -29.07 324.21 -6.80 -35.87 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -6.60 Total: 9.15 kcal Atomic # 6 Polarization: 1.63 SS G_CDS: -1.53 Total: 0.09 kcal Atomic # 7 Polarization: -59.59 SS G_CDS: 1.41 Total: -58.18 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: 0.06 Total: -7.96 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.07 -6.80 -35.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044698830.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.583 kcal (2) G-P(sol) polarization free energy of solvation -29.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds