Wall clock time and date at job start Tue Mar 31 2020 03:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.33318 * 126.81784 * 2 1 4 4 N 1.28514 * 109.43852 * 180.28079 * 3 2 1 5 5 N 1.28705 * 110.64034 * 359.73101 * 4 3 2 6 6 H 0.97007 * 126.03513 * 180.02562 * 5 4 3 7 7 C 1.37010 * 126.80943 * 179.82807 * 2 1 3 8 8 C 1.47228 * 127.19452 * 359.97438 * 7 2 1 9 9 O 1.21626 * 119.99526 * 35.72916 * 8 7 2 10 10 N 1.34772 * 120.00755 * 215.73505 * 8 7 2 11 11 C 1.46928 * 120.62648 * 6.25130 * 10 8 7 12 12 C 1.53193 * 108.77411 * 233.59006 * 11 10 8 13 13 C 1.53037 * 109.31244 * 305.36158 * 12 11 10 14 14 H 1.09004 * 109.44664 * 181.37765 * 13 12 11 15 15 N 1.46501 * 109.46282 * 301.34586 * 13 12 11 16 16 C 1.36936 * 120.00068 * 275.06738 * 15 13 12 17 17 H 1.08002 * 120.00099 * 359.72531 * 16 15 13 18 18 C 1.38809 * 119.99961 * 179.97438 * 16 15 13 19 19 N 1.31618 * 119.99743 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99854 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47228 * 60.00187 * 20 18 16 22 22 H 1.48507 * 109.46959 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47221 * 299.99641 * 20 18 16 24 24 C 1.53043 * 109.53665 * 61.36849 * 13 12 11 25 25 C 1.46922 * 120.63698 * 186.23317 * 10 8 7 26 26 H 1.09002 * 109.58606 * 246.20013 * 25 10 8 27 27 C 1.53000 * 109.58451 * 6.61853 * 25 10 8 28 28 H 1.09002 * 109.46633 * 270.17583 * 1 2 3 29 29 H 1.09001 * 109.47256 * 30.17023 * 1 2 3 30 30 H 1.09000 * 109.47460 * 150.17870 * 1 2 3 31 31 H 1.09002 * 109.58928 * 353.37038 * 11 10 8 32 32 H 1.08996 * 109.59381 * 113.80181 * 11 10 8 33 33 H 1.09005 * 109.49801 * 185.40998 * 12 11 10 34 34 H 1.09003 * 109.50105 * 65.31730 * 12 11 10 35 35 H 0.97003 * 119.99566 * 95.06797 * 15 13 12 36 36 H 0.97008 * 119.99619 * 179.97438 * 19 18 16 37 37 H 1.09003 * 109.50036 * 58.58541 * 24 13 12 38 38 H 1.09002 * 109.49794 * 178.68106 * 24 13 12 39 39 H 1.08997 * 109.47054 * 172.11482 * 27 25 10 40 40 H 1.09001 * 109.47391 * 292.12298 * 27 25 10 41 41 H 1.09007 * 109.47233 * 52.12183 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3059 1.0673 0.0000 4 7 3.5324 0.6834 -0.0059 5 7 3.6056 -0.6015 -0.0043 6 1 4.4213 -1.1267 -0.0075 7 6 2.3279 -1.0969 0.0033 8 6 1.9222 -2.5122 0.0081 9 8 0.9324 -2.8631 -0.6056 10 7 2.6473 -3.4190 0.6924 11 6 3.7633 -2.9932 1.5480 12 6 5.0201 -3.7693 1.1416 13 6 4.7265 -5.2704 1.1922 14 1 5.6264 -5.8253 0.9271 15 7 4.3061 -5.6401 2.5461 16 6 5.2454 -5.9236 3.5013 17 1 6.2962 -5.8788 3.2554 18 6 4.8471 -6.2734 4.7841 19 7 3.5666 -6.3322 5.0825 20 14 6.1286 -6.6593 6.0873 21 1 6.9985 -5.4735 6.2926 22 1 5.4497 -7.0014 7.3631 23 1 6.9561 -7.8093 5.6425 24 6 3.6095 -5.6071 0.2017 25 6 2.3368 -4.8518 0.5974 26 1 1.9823 -5.2137 1.5625 27 6 1.2578 -5.0734 -0.4644 28 1 -0.3633 0.0032 1.0277 29 1 -0.3634 0.8884 -0.5165 30 1 -0.3634 -0.8916 -0.5110 31 1 3.9360 -1.9248 1.4187 32 1 3.5254 -3.2034 2.5907 33 1 5.8316 -3.5339 1.8302 34 1 5.3091 -3.4890 0.1286 35 1 3.3623 -5.6842 2.7657 36 1 3.2882 -6.5770 5.9790 37 1 3.9117 -5.3095 -0.8025 38 1 3.4170 -6.6798 0.2213 39 1 1.1285 -6.1424 -0.6334 40 1 0.3167 -4.6433 -0.1215 41 1 1.5594 -4.5924 -1.3950 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044698830.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:33 Heat of formation + Delta-G solvation = 71.268831 kcal Electronic energy + Delta-G solvation = -24701.419557 eV Core-core repulsion = 21232.794974 eV Total energy + Delta-G solvation = -3468.624583 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.159 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.56660 -41.56242 -38.97900 -36.09614 -35.19691 -34.38474 -33.74083 -32.80323 -30.95358 -29.08943 -28.32369 -25.95942 -25.57212 -24.78253 -24.09942 -22.56393 -21.59362 -20.31434 -19.27075 -18.86796 -18.05381 -17.56034 -17.01302 -16.78388 -16.19801 -15.68038 -15.56228 -15.44356 -14.90625 -14.80389 -14.49359 -14.26809 -14.01441 -13.68265 -13.49384 -13.34745 -13.06538 -12.98201 -12.86290 -12.71902 -12.54046 -12.21573 -12.18367 -12.11728 -12.02043 -11.67645 -11.54018 -11.44564 -10.90662 -10.45069 -10.36596 -9.68365 -8.97502 -7.91485 -5.18510 -0.18116 1.08112 1.31193 1.49787 1.50218 1.56224 1.57212 1.97310 2.58173 3.05067 3.32539 3.42272 3.61135 3.76173 3.84849 3.90155 3.98374 4.03900 4.15322 4.30812 4.42709 4.57313 4.59748 4.61692 4.73919 4.81787 4.90903 4.92307 4.97382 5.07747 5.15490 5.22448 5.26505 5.31140 5.39917 5.55656 5.57514 5.62972 6.20449 6.30646 6.84710 7.12275 7.38375 8.14344 8.36170 9.31509 Molecular weight = 293.16amu Principal moments of inertia in cm(-1) A = 0.019632 B = 0.004596 C = 0.004217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.885107 B = 6090.582022 C = 6638.812897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.044 3.956 3 N -0.290 5.290 4 N -0.060 5.060 5 N -0.357 5.357 6 H 0.464 0.536 7 C -0.067 4.067 8 C 0.596 3.404 9 O -0.526 6.526 10 N -0.587 5.587 11 C 0.111 3.889 12 C -0.145 4.145 13 C 0.165 3.835 14 H 0.054 0.946 15 N -0.731 5.731 16 C -0.232 4.232 17 H 0.078 0.922 18 C -0.071 4.071 19 N -0.969 5.969 20 Si 0.962 3.038 21 H -0.280 1.280 22 H -0.303 1.303 23 H -0.281 1.281 24 C -0.123 4.123 25 C 0.149 3.851 26 H 0.057 0.943 27 C -0.126 4.126 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.373 0.627 36 H 0.248 0.752 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.435 8.138 -12.982 15.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.096 4.096 3 N -0.156 5.156 4 N -0.041 5.041 5 N -0.089 5.089 6 H 0.317 0.683 7 C -0.202 4.202 8 C 0.381 3.619 9 O -0.402 6.402 10 N -0.320 5.320 11 C -0.012 4.012 12 C -0.186 4.186 13 C 0.057 3.943 14 H 0.072 0.928 15 N -0.372 5.372 16 C -0.364 4.364 17 H 0.096 0.904 18 C -0.264 4.264 19 N -0.620 5.620 20 Si 0.793 3.207 21 H -0.206 1.206 22 H -0.230 1.230 23 H -0.207 1.207 24 C -0.162 4.162 25 C 0.046 3.954 26 H 0.075 0.925 27 C -0.183 4.183 28 H 0.107 0.893 29 H 0.114 0.886 30 H 0.107 0.893 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.106 0.894 35 H 0.206 0.794 36 H 0.057 0.943 37 H 0.108 0.892 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.086 9.258 -13.236 16.189 hybrid contribution 0.429 -1.640 1.482 2.251 sum -0.657 7.619 -11.754 14.023 Atomic orbital electron populations 1.20379 0.83605 1.05138 1.04365 1.22687 0.99579 0.86717 1.00633 1.74898 0.95589 1.26662 1.18471 1.78112 1.15866 0.93068 1.17010 1.45885 1.09105 1.06444 1.47445 0.68342 1.22128 0.85539 0.96464 1.16030 1.16881 0.83290 0.82200 0.79550 1.90871 1.26141 1.77977 1.45218 1.48111 1.32132 1.06932 1.44777 1.21841 0.86464 0.98272 0.94574 1.22490 0.96200 0.97991 1.01929 1.20450 0.96150 0.93172 0.84574 0.92756 1.42669 1.05654 1.82009 1.06884 1.19555 0.89827 1.36374 0.90596 0.90424 1.25394 0.97306 1.03912 0.99755 1.69788 1.15018 1.57000 1.20179 0.85376 0.78508 0.78133 0.78710 1.20601 1.22965 1.20693 1.22170 0.94128 1.00429 0.99471 1.21259 0.96368 0.78116 0.99635 0.92544 1.22076 0.97803 1.00688 0.97778 0.89285 0.88562 0.89272 0.90079 0.92317 0.90917 0.89430 0.79353 0.94325 0.89238 0.90620 0.92062 0.91859 0.91779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.54 10.26 71.24 0.73 -0.81 16 2 C 0.04 1.12 7.29 42.04 0.31 1.42 16 3 N -0.29 -8.00 12.35 -47.88 -0.59 -8.59 16 4 N -0.06 -1.52 13.35 37.02 0.49 -1.03 16 5 N -0.36 -7.66 5.67 -48.52 -0.28 -7.94 16 6 H 0.46 7.24 7.42 -219.89 -1.63 5.61 16 7 C -0.07 -1.67 6.22 40.40 0.25 -1.42 16 8 C 0.60 16.06 7.32 86.61 0.63 16.70 16 9 O -0.53 -15.63 11.20 -4.11 -0.05 -15.67 16 10 N -0.59 -15.89 2.97 -799.11 -2.37 -18.27 16 11 C 0.11 3.01 5.72 86.36 0.49 3.50 16 12 C -0.15 -3.74 5.78 30.67 0.18 -3.56 16 13 C 0.17 5.27 3.10 45.02 0.14 5.41 16 14 H 0.05 1.76 8.08 -2.39 -0.02 1.74 16 15 N -0.73 -31.82 4.31 -322.81 -1.39 -33.21 16 16 C -0.23 -11.54 9.93 84.03 0.83 -10.71 16 17 H 0.08 3.69 7.83 -2.91 -0.02 3.66 16 18 C -0.07 -3.82 5.50 84.86 0.47 -3.36 16 19 N -0.97 -56.28 13.06 21.65 0.28 -55.99 16 20 Si 0.96 43.84 29.55 68.60 2.03 45.87 16 21 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 22 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 23 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 24 C -0.12 -3.32 5.07 30.67 0.16 -3.16 16 25 C 0.15 4.28 3.19 44.97 0.14 4.42 16 26 H 0.06 1.99 6.64 -2.39 -0.02 1.97 16 27 C -0.13 -3.32 7.61 71.98 0.55 -2.77 16 28 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.09 1.89 6.72 -2.39 -0.02 1.87 16 31 H 0.08 1.82 4.15 -2.39 -0.01 1.81 16 32 H 0.06 2.07 7.74 -2.39 -0.02 2.05 16 33 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 34 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.37 17.93 6.06 -92.71 -0.56 17.36 16 36 H 0.25 14.27 8.31 -92.70 -0.77 13.49 16 37 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.06 1.83 6.68 -2.39 -0.02 1.82 16 41 H 0.06 1.67 6.82 -2.38 -0.02 1.66 16 Total: -1.00 -62.54 324.21 1.89 -60.65 By element: Atomic # 1 Polarization: 29.62 SS G_CDS: -1.11 Total: 28.50 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: 4.88 Total: 5.67 kcal Atomic # 7 Polarization: -121.17 SS G_CDS: -3.86 Total: -125.03 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: -0.05 Total: -15.67 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -62.54 1.89 -60.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044698830.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.919 kcal (2) G-P(sol) polarization free energy of solvation -62.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds